Wall clock time and date at job start Tue Mar 31 2020 18:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36943 * 120.00096 * 2 1 4 4 H 1.07997 * 120.00048 * 202.51972 * 3 2 1 5 5 C 1.38810 * 119.99625 * 22.51115 * 3 2 1 6 6 N 1.31616 * 120.00001 * 12.57341 * 5 3 2 7 7 Si 1.86798 * 119.99685 * 192.56673 * 5 3 2 8 8 H 1.48500 * 109.47231 * 90.00625 * 7 5 3 9 9 H 1.48509 * 109.47009 * 210.00342 * 7 5 3 10 10 H 1.48497 * 109.47409 * 330.00217 * 7 5 3 11 11 C 1.46501 * 120.00189 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46972 * 270.00110 * 11 2 1 13 13 N 1.46503 * 109.47344 * 180.02562 * 12 11 2 14 14 C 1.46507 * 119.99612 * 269.99958 * 13 12 11 15 15 C 1.34767 * 120.00327 * 89.99530 * 13 12 11 16 16 O 1.21285 * 119.99804 * 354.89647 * 15 13 12 17 17 C 1.50704 * 120.00122 * 175.16756 * 15 13 12 18 18 C 1.52991 * 115.54843 * 293.64765 * 17 15 13 19 19 C 1.50700 * 109.47339 * 293.91560 * 18 17 15 20 20 C 1.38216 * 120.01245 * 267.46121 * 19 18 17 21 21 C 1.38230 * 120.02396 * 179.72200 * 20 19 18 22 22 C 1.38272 * 120.04860 * 0.55253 * 21 20 19 23 23 C 1.38171 * 120.02566 * 359.72450 * 22 21 20 24 24 C 1.38435 * 120.01339 * 87.73891 * 19 18 17 25 25 F 1.35109 * 120.02415 * 0.02562 * 24 19 18 26 26 C 1.52996 * 117.49687 * 147.97752 * 17 15 13 27 27 C 1.53001 * 117.49387 * 79.31761 * 17 15 13 28 28 H 1.08995 * 109.46654 * 274.95662 * 1 2 3 29 29 H 1.08997 * 109.46857 * 34.95819 * 1 2 3 30 30 H 1.09003 * 109.46950 * 154.95863 * 1 2 3 31 31 H 0.97003 * 120.00073 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47490 * 149.99926 * 11 2 1 33 33 H 1.08997 * 109.47081 * 29.99445 * 11 2 1 34 34 H 1.08996 * 109.47164 * 59.99616 * 12 11 2 35 35 H 1.09007 * 109.46937 * 300.00084 * 12 11 2 36 36 H 1.09004 * 109.46702 * 272.04778 * 14 13 12 37 37 H 1.08997 * 109.47008 * 32.04395 * 14 13 12 38 38 H 1.09001 * 109.46803 * 152.04434 * 14 13 12 39 39 H 1.09001 * 109.47437 * 53.91994 * 18 17 15 40 40 H 1.09007 * 109.47006 * 173.91990 * 18 17 15 41 41 H 1.07995 * 119.98831 * 359.97438 * 20 19 18 42 42 H 1.07998 * 119.97335 * 180.27772 * 21 20 19 43 43 H 1.08001 * 119.98261 * 179.75083 * 22 21 20 44 44 H 1.08001 * 120.01195 * 180.02562 * 23 22 21 45 45 H 1.09006 * 117.50217 * 0.02562 * 26 17 15 46 46 H 1.09004 * 117.50015 * 145.02205 * 26 17 15 47 47 H 1.09002 * 117.49227 * 214.97828 * 27 17 15 48 48 H 1.08996 * 117.49976 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1680 1.2216 -0.3582 5 6 1.5350 2.3422 0.4603 6 7 0.3991 2.2654 1.1206 7 14 2.3200 4.0072 0.1425 8 1 1.8211 4.5520 -1.1457 9 1 1.9673 4.9390 1.2438 10 1 3.7956 3.8544 0.0770 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1856 -2.9794 1.4413 14 6 2.4536 -4.2485 1.4406 15 6 4.5333 -2.9789 1.4414 16 8 5.1393 -1.9324 1.3485 17 6 5.2874 -4.2791 1.5509 18 6 5.1380 -5.0185 2.8819 19 6 5.7726 -4.2066 3.9816 20 6 7.0920 -4.4265 4.3299 21 6 7.6760 -3.6781 5.3346 22 6 6.9380 -2.7166 6.0000 23 6 5.6172 -2.4990 5.6573 24 6 5.0327 -3.2443 4.6471 25 9 3.7412 -3.0328 4.3116 26 6 6.6371 -4.3752 0.8370 27 6 5.4231 -5.1257 0.2837 28 1 -0.3632 0.0888 1.0238 29 1 -0.3633 0.8422 -0.5888 30 1 -0.3633 -0.9311 -0.4350 31 1 -0.0304 3.0735 1.4426 32 1 3.1500 -1.1382 -0.5143 33 1 1.6085 -2.0281 -0.5146 34 1 1.5002 -1.8415 1.9555 35 1 3.0416 -0.9515 1.9559 36 1 2.2401 -4.5453 2.4675 37 1 1.5176 -4.1277 0.8952 38 1 3.0585 -5.0165 0.9585 39 1 4.0799 -5.1624 3.1009 40 1 5.6306 -5.9886 2.8160 41 1 7.6679 -5.1806 3.8141 42 1 8.7083 -3.8475 5.6030 43 1 7.3942 -2.1352 6.7875 44 1 5.0411 -1.7477 6.1769 45 1 6.9800 -3.4978 0.2885 46 1 7.4187 -4.9655 1.3154 47 1 5.4065 -6.2096 0.3985 48 1 4.9668 -4.7425 -0.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698998443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:24 Heat of formation + Delta-G solvation = 0.985879 kcal Electronic energy + Delta-G solvation = -30100.232046 eV Core-core repulsion = 26071.619764 eV Total energy + Delta-G solvation = -4028.612283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.77832 -40.29303 -38.92925 -36.91786 -35.80751 -34.72263 -32.54596 -31.35547 -30.60927 -28.72790 -27.37892 -26.38370 -25.78313 -24.21309 -22.88461 -22.58299 -22.27069 -21.38124 -20.24188 -18.37096 -17.59566 -16.77046 -16.58772 -16.45284 -15.82200 -15.75520 -15.59954 -15.11316 -14.75132 -14.38362 -14.31000 -14.05252 -13.58512 -13.48156 -13.22988 -13.04199 -12.74287 -12.64111 -12.45153 -12.37703 -12.24871 -12.06580 -11.88207 -11.67452 -11.63143 -11.26606 -11.16723 -10.80927 -10.76238 -10.61866 -10.44155 -10.16614 -10.03396 -9.85345 -9.68411 -9.30767 -9.04528 -8.68513 -8.52246 -8.21156 -6.66155 -5.64063 -3.09096 1.06550 1.12370 2.91624 3.29648 3.44634 3.47083 3.51714 3.55380 3.68778 4.24702 4.40164 4.53327 4.58936 4.65295 4.66221 4.77842 4.83735 4.99832 5.09473 5.23783 5.31759 5.41985 5.45289 5.50122 5.52380 5.59745 5.61814 5.74091 5.76680 5.80968 5.86306 5.94980 5.97104 6.03903 6.09207 6.21206 6.27463 6.35873 6.38864 6.74200 6.78175 6.81514 6.90598 7.17464 7.42458 7.77847 7.84624 7.92859 8.48784 8.62501 9.33343 9.95472 10.43587 11.41368 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003658 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.311457 B = 7651.710738 C = 8516.637160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.249 4.249 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.145 3.855 12 C 0.099 3.901 13 N -0.601 5.601 14 C 0.079 3.921 15 C 0.544 3.456 16 O -0.528 6.528 17 C -0.150 4.150 18 C -0.038 4.038 19 C -0.115 4.115 20 C -0.086 4.086 21 C -0.133 4.133 22 C -0.094 4.094 23 C -0.152 4.152 24 C 0.111 3.889 25 F -0.129 7.129 26 C -0.143 4.143 27 C -0.160 4.160 28 H 0.029 0.971 29 H 0.043 0.957 30 H -0.004 1.004 31 H 0.251 0.749 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 -21.059 6.694 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.322 5.322 3 C -0.379 4.379 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.025 4.025 13 N -0.334 5.334 14 C -0.065 4.065 15 C 0.330 3.670 16 O -0.404 6.404 17 C -0.154 4.154 18 C -0.075 4.075 19 C -0.116 4.116 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.171 4.171 24 C 0.092 3.908 25 F -0.107 7.107 26 C -0.180 4.180 27 C -0.197 4.197 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.258 -20.317 6.684 24.170 hybrid contribution -0.028 1.061 0.061 1.063 sum 11.230 -19.256 6.745 23.290 Atomic orbital electron populations 1.20812 0.82478 0.95415 0.99412 1.43967 1.01886 1.00645 1.85702 1.19275 0.98066 0.85225 1.35290 0.91279 1.25000 0.97853 0.98480 0.98330 1.70065 1.18893 1.26974 1.39708 0.86247 0.78978 0.84096 0.77275 1.21543 1.21767 1.20404 1.21103 0.95904 0.88037 0.93316 1.22532 0.95342 0.83165 1.01479 1.47873 1.05278 1.07692 1.72604 1.21798 0.97430 0.86000 1.01248 1.19326 0.82111 0.88883 0.76663 1.90731 1.67802 1.32916 1.48902 1.21402 1.02421 0.97246 0.94297 1.20054 1.01888 0.96513 0.89081 1.19779 0.95089 0.98340 0.98381 1.20852 0.93146 0.99496 0.96872 1.21143 1.00142 0.96843 0.97028 1.20992 0.93153 0.97530 0.99537 1.21201 0.96616 1.00856 0.98406 1.17622 0.79566 0.97145 0.96484 1.91558 1.33970 1.93780 1.91419 1.22985 0.90327 1.02671 1.02017 1.23134 1.02345 0.98336 0.95873 0.95224 0.93837 0.98537 0.93874 0.93632 0.94810 0.91607 0.90042 0.93110 0.91165 0.91242 0.89632 0.89611 0.85361 0.85533 0.85237 0.84780 0.87783 0.88204 0.87888 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 9.02 59.85 0.54 4.70 16 2 N -0.60 -15.98 2.92 -181.12 -0.53 -16.51 16 3 C -0.25 -7.31 9.67 -15.06 -0.15 -7.46 16 4 H 0.07 2.06 7.85 -52.49 -0.41 1.65 16 5 C 0.00 0.03 5.11 -17.43 -0.09 -0.06 16 6 N -0.91 -27.49 10.66 55.49 0.59 -26.90 16 7 Si 0.90 23.12 29.57 -169.99 -5.03 18.10 16 8 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.14 3.25 6.03 -4.04 -0.02 3.23 16 12 C 0.10 2.07 5.70 -4.04 -0.02 2.04 16 13 N -0.60 -10.04 2.50 -181.56 -0.45 -10.50 16 14 C 0.08 0.95 9.18 59.85 0.55 1.50 16 15 C 0.54 9.46 5.46 -10.99 -0.06 9.40 16 16 O -0.53 -11.82 16.34 5.55 0.09 -11.73 16 17 C -0.15 -1.84 0.79 -155.66 -0.12 -1.97 16 18 C -0.04 -0.39 4.87 -27.89 -0.14 -0.53 16 19 C -0.11 -1.39 4.97 -104.56 -0.52 -1.91 16 20 C -0.09 -0.85 9.69 -39.59 -0.38 -1.23 16 21 C -0.13 -1.26 10.05 -39.57 -0.40 -1.66 16 22 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 23 C -0.15 -1.95 10.03 -39.52 -0.40 -2.35 16 24 C 0.11 1.59 6.83 -39.42 -0.27 1.32 16 25 F -0.13 -2.11 15.31 2.25 0.03 -2.08 16 26 C -0.14 -1.55 9.78 -26.69 -0.26 -1.81 16 27 C -0.16 -1.51 8.64 -26.69 -0.23 -1.74 16 28 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 29 H 0.04 1.18 7.28 -51.93 -0.38 0.80 16 30 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.05 1.09 8.03 -51.93 -0.42 0.68 16 33 H 0.03 0.68 7.86 -51.93 -0.41 0.27 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.08 2.04 7.50 -51.93 -0.39 1.66 16 36 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 37 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.07 0.67 5.83 -51.93 -0.30 0.37 16 39 H 0.09 0.89 5.71 -51.93 -0.30 0.59 16 40 H 0.09 0.63 8.01 -51.93 -0.42 0.21 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.10 1.36 8.01 -51.93 -0.42 0.94 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -35.32 394.20 -9.26 -44.58 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.54 Total: -1.03 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.37 Total: 0.12 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.39 Total: -53.91 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.32 -9.26 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698998443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.565 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds