Wall clock time and date at job start Tue Mar 31 2020 18:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36943 * 120.00096 * 2 1 4 4 H 1.07997 * 120.00048 * 202.51972 * 3 2 1 5 5 C 1.38810 * 119.99625 * 22.51115 * 3 2 1 6 6 N 1.31616 * 120.00001 * 12.57341 * 5 3 2 7 7 Si 1.86798 * 119.99685 * 192.56673 * 5 3 2 8 8 H 1.48500 * 109.47231 * 90.00625 * 7 5 3 9 9 H 1.48509 * 109.47009 * 210.00342 * 7 5 3 10 10 H 1.48497 * 109.47409 * 330.00217 * 7 5 3 11 11 C 1.46501 * 120.00189 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46972 * 270.00110 * 11 2 1 13 13 N 1.46503 * 109.47344 * 180.02562 * 12 11 2 14 14 C 1.46507 * 119.99612 * 269.99958 * 13 12 11 15 15 C 1.34767 * 120.00327 * 89.99530 * 13 12 11 16 16 O 1.21285 * 119.99804 * 354.89647 * 15 13 12 17 17 C 1.50704 * 120.00122 * 175.16756 * 15 13 12 18 18 C 1.52991 * 115.54843 * 293.64765 * 17 15 13 19 19 C 1.50700 * 109.47339 * 293.91560 * 18 17 15 20 20 C 1.38216 * 120.01245 * 267.46121 * 19 18 17 21 21 C 1.38230 * 120.02396 * 179.72200 * 20 19 18 22 22 C 1.38272 * 120.04860 * 0.55253 * 21 20 19 23 23 C 1.38171 * 120.02566 * 359.72450 * 22 21 20 24 24 C 1.38435 * 120.01339 * 87.73891 * 19 18 17 25 25 F 1.35109 * 120.02415 * 0.02562 * 24 19 18 26 26 C 1.52996 * 117.49687 * 147.97752 * 17 15 13 27 27 C 1.53001 * 117.49387 * 79.31761 * 17 15 13 28 28 H 1.08995 * 109.46654 * 274.95662 * 1 2 3 29 29 H 1.08997 * 109.46857 * 34.95819 * 1 2 3 30 30 H 1.09003 * 109.46950 * 154.95863 * 1 2 3 31 31 H 0.97003 * 120.00073 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47490 * 149.99926 * 11 2 1 33 33 H 1.08997 * 109.47081 * 29.99445 * 11 2 1 34 34 H 1.08996 * 109.47164 * 59.99616 * 12 11 2 35 35 H 1.09007 * 109.46937 * 300.00084 * 12 11 2 36 36 H 1.09004 * 109.46702 * 272.04778 * 14 13 12 37 37 H 1.08997 * 109.47008 * 32.04395 * 14 13 12 38 38 H 1.09001 * 109.46803 * 152.04434 * 14 13 12 39 39 H 1.09001 * 109.47437 * 53.91994 * 18 17 15 40 40 H 1.09007 * 109.47006 * 173.91990 * 18 17 15 41 41 H 1.07995 * 119.98831 * 359.97438 * 20 19 18 42 42 H 1.07998 * 119.97335 * 180.27772 * 21 20 19 43 43 H 1.08001 * 119.98261 * 179.75083 * 22 21 20 44 44 H 1.08001 * 120.01195 * 180.02562 * 23 22 21 45 45 H 1.09006 * 117.50217 * 0.02562 * 26 17 15 46 46 H 1.09004 * 117.50015 * 145.02205 * 26 17 15 47 47 H 1.09002 * 117.49227 * 214.97828 * 27 17 15 48 48 H 1.08996 * 117.49976 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1680 1.2216 -0.3582 5 6 1.5350 2.3422 0.4603 6 7 0.3991 2.2654 1.1206 7 14 2.3200 4.0072 0.1425 8 1 1.8211 4.5520 -1.1457 9 1 1.9673 4.9390 1.2438 10 1 3.7956 3.8544 0.0770 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1856 -2.9794 1.4413 14 6 2.4536 -4.2485 1.4406 15 6 4.5333 -2.9789 1.4414 16 8 5.1393 -1.9324 1.3485 17 6 5.2874 -4.2791 1.5509 18 6 5.1380 -5.0185 2.8819 19 6 5.7726 -4.2066 3.9816 20 6 7.0920 -4.4265 4.3299 21 6 7.6760 -3.6781 5.3346 22 6 6.9380 -2.7166 6.0000 23 6 5.6172 -2.4990 5.6573 24 6 5.0327 -3.2443 4.6471 25 9 3.7412 -3.0328 4.3116 26 6 6.6371 -4.3752 0.8370 27 6 5.4231 -5.1257 0.2837 28 1 -0.3632 0.0888 1.0238 29 1 -0.3633 0.8422 -0.5888 30 1 -0.3633 -0.9311 -0.4350 31 1 -0.0304 3.0735 1.4426 32 1 3.1500 -1.1382 -0.5143 33 1 1.6085 -2.0281 -0.5146 34 1 1.5002 -1.8415 1.9555 35 1 3.0416 -0.9515 1.9559 36 1 2.2401 -4.5453 2.4675 37 1 1.5176 -4.1277 0.8952 38 1 3.0585 -5.0165 0.9585 39 1 4.0799 -5.1624 3.1009 40 1 5.6306 -5.9886 2.8160 41 1 7.6679 -5.1806 3.8141 42 1 8.7083 -3.8475 5.6030 43 1 7.3942 -2.1352 6.7875 44 1 5.0411 -1.7477 6.1769 45 1 6.9800 -3.4978 0.2885 46 1 7.4187 -4.9655 1.3154 47 1 5.4065 -6.2096 0.3985 48 1 4.9668 -4.7425 -0.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698998443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:23 Heat of formation + Delta-G solvation = -19.444051 kcal Electronic energy + Delta-G solvation = -30101.117955 eV Core-core repulsion = 26071.619764 eV Total energy + Delta-G solvation = -4029.498191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.87668 -41.44226 -39.86090 -38.18391 -37.46715 -36.37255 -33.49140 -33.33381 -31.44225 -30.46164 -28.25875 -27.95996 -27.58502 -25.87830 -23.75543 -23.58580 -23.35342 -22.59142 -21.93866 -19.59187 -18.85692 -18.54929 -17.75849 -17.51662 -17.14181 -16.99966 -16.73278 -16.52654 -16.13394 -15.74898 -15.50809 -15.32692 -15.13788 -14.78700 -14.44080 -14.33192 -14.17715 -13.97271 -13.80872 -13.63769 -13.29147 -13.19725 -13.03760 -13.00289 -12.82758 -12.80318 -12.54186 -12.46114 -12.37528 -12.11841 -12.06988 -12.04057 -11.66500 -11.49836 -10.99129 -10.73160 -10.62023 -9.89178 -9.73470 -9.55915 -8.81187 -7.90129 -5.38283 0.21582 0.27582 1.38920 1.40466 1.50125 1.65439 2.03874 2.46680 2.59662 2.80494 3.23455 3.37173 3.50767 3.63967 3.73271 3.76124 3.82706 3.96372 4.07190 4.10169 4.23979 4.35777 4.37075 4.41629 4.43864 4.55549 4.69232 4.70549 4.76513 4.77556 4.79995 4.83638 4.92121 4.96922 4.99563 5.08383 5.13486 5.15277 5.25731 5.26965 5.27675 5.41487 5.47109 5.53277 5.62095 5.67547 5.99577 6.26843 6.53670 7.09595 7.28587 7.79632 8.20918 9.12959 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003658 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.311457 B = 7651.710738 C = 8516.637160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.054 0.946 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.279 1.279 11 C 0.153 3.847 12 C 0.121 3.879 13 N -0.601 5.601 14 C 0.074 3.926 15 C 0.537 3.463 16 O -0.594 6.594 17 C -0.163 4.163 18 C -0.032 4.032 19 C -0.125 4.125 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.100 4.100 23 C -0.180 4.180 24 C 0.066 3.934 25 F -0.154 7.154 26 C -0.146 4.146 27 C -0.131 4.131 28 H 0.007 0.993 29 H 0.019 0.981 30 H 0.037 0.963 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.136 0.864 47 H 0.149 0.851 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 -24.732 6.239 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.340 5.340 3 C -0.397 4.397 4 H 0.072 0.928 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.203 1.203 9 H -0.214 1.214 10 H -0.204 1.204 11 C 0.025 3.975 12 C -0.005 4.005 13 N -0.333 5.333 14 C -0.068 4.068 15 C 0.326 3.674 16 O -0.474 6.474 17 C -0.167 4.167 18 C -0.069 4.069 19 C -0.126 4.126 20 C -0.101 4.101 21 C -0.147 4.147 22 C -0.118 4.118 23 C -0.199 4.199 24 C 0.047 3.953 25 F -0.132 7.132 26 C -0.183 4.183 27 C -0.167 4.167 28 H 0.025 0.975 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.185 0.815 42 H 0.180 0.820 43 H 0.170 0.830 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.154 0.846 47 H 0.167 0.833 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.046 -24.057 6.225 28.066 hybrid contribution -0.521 2.165 0.226 2.238 sum 12.525 -21.892 6.452 26.034 Atomic orbital electron populations 1.20602 0.81802 0.96417 0.97896 1.44169 1.02556 1.01272 1.85980 1.19402 0.97803 0.86950 1.35543 0.92787 1.25724 0.98541 1.01653 0.98266 1.70209 1.19869 1.27629 1.40313 0.85288 0.77972 0.79888 0.77461 1.20318 1.21391 1.20445 1.21099 0.94926 0.87305 0.94150 1.21852 0.94705 0.84392 0.99557 1.47876 1.05625 1.07672 1.72085 1.22105 0.97905 0.84202 1.02586 1.20356 0.82048 0.90307 0.74717 1.90691 1.69066 1.35917 1.51763 1.21285 1.03059 0.95375 0.96946 1.20158 1.02248 0.97632 0.86901 1.20134 0.95971 0.97858 0.98604 1.21352 0.92324 0.99846 0.96602 1.21637 1.01535 0.95470 0.96024 1.21339 0.92126 0.98123 1.00179 1.21388 0.98111 1.01346 0.99060 1.18161 0.79308 0.99422 0.98419 1.91478 1.35677 1.94233 1.91844 1.23088 0.91053 1.02359 1.01812 1.23322 0.99806 1.00238 0.93384 0.97507 0.96265 0.94419 0.94036 0.95903 0.91427 0.91492 0.95513 0.92070 0.90254 0.88035 0.90025 0.85059 0.81509 0.82024 0.83026 0.85828 0.91081 0.84639 0.83335 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 9.02 127.77 1.15 10.32 16 2 N -0.62 -33.95 2.92 -726.94 -2.13 -36.07 16 3 C -0.27 -16.35 9.67 84.03 0.81 -15.54 16 4 H 0.05 3.40 7.85 -2.91 -0.02 3.38 16 5 C -0.05 -2.81 5.11 84.86 0.43 -2.38 16 6 N -0.93 -58.08 10.66 21.65 0.23 -57.85 16 7 Si 0.97 48.89 29.57 68.60 2.03 50.92 16 8 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 9 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 11 C 0.15 7.05 6.03 86.38 0.52 7.57 16 12 C 0.12 5.33 5.70 86.38 0.49 5.82 16 13 N -0.60 -20.43 2.50 -846.73 -2.11 -22.54 16 14 C 0.07 1.63 9.18 127.77 1.17 2.81 16 15 C 0.54 19.12 5.46 87.66 0.48 19.60 16 16 O -0.59 -28.50 16.34 -3.04 -0.05 -28.55 16 17 C -0.16 -3.65 0.79 -52.93 -0.04 -3.69 16 18 C -0.03 -0.56 4.87 29.85 0.15 -0.42 16 19 C -0.12 -2.82 4.97 -19.82 -0.10 -2.92 16 20 C -0.08 -1.37 9.69 22.26 0.22 -1.15 16 21 C -0.13 -2.07 10.05 22.28 0.22 -1.84 16 22 C -0.10 -2.02 10.04 22.26 0.22 -1.79 16 23 C -0.18 -4.94 10.03 22.31 0.22 -4.71 16 24 C 0.07 1.97 6.83 22.37 0.15 2.13 16 25 F -0.15 -5.43 15.31 44.97 0.69 -4.74 16 26 C -0.15 -2.76 9.78 30.62 0.30 -2.46 16 27 C -0.13 -1.92 8.64 30.62 0.26 -1.65 16 28 H 0.01 0.37 7.36 -2.39 -0.02 0.35 16 29 H 0.02 1.05 7.28 -2.39 -0.02 1.03 16 30 H 0.04 1.60 7.84 -2.39 -0.02 1.59 16 31 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 33 H 0.07 2.65 7.86 -2.39 -0.02 2.63 16 34 H 0.07 2.89 8.07 -2.39 -0.02 2.87 16 35 H 0.03 1.45 7.50 -2.38 -0.02 1.44 16 36 H 0.06 1.26 7.32 -2.38 -0.02 1.25 16 37 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.10 1.60 5.83 -2.39 -0.01 1.58 16 39 H 0.08 1.48 5.71 -2.39 -0.01 1.47 16 40 H 0.13 1.10 8.01 -2.38 -0.02 1.08 16 41 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.12 3.39 8.06 -2.91 -0.02 3.36 16 45 H 0.07 1.84 8.01 -2.38 -0.02 1.82 16 46 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -85.35 394.20 6.27 -79.07 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.94 Total: 10.08 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.67 Total: 9.69 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.01 Total: -116.47 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.69 Total: -4.74 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -85.35 6.27 -79.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698998443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.629 kcal (2) G-P(sol) polarization free energy of solvation -85.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds