Wall clock time and date at job start Tue Mar 31 2020 18:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99817 * 2 1 4 4 H 1.07999 * 120.00015 * 36.30580 * 3 2 1 5 5 C 1.38814 * 119.99996 * 216.30552 * 3 2 1 6 6 N 1.31621 * 119.99975 * 27.68779 * 5 3 2 7 7 Si 1.86797 * 120.00004 * 207.69099 * 5 3 2 8 8 H 1.48502 * 109.47227 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46962 * 239.99744 * 7 5 3 10 10 H 1.48503 * 109.47312 * 119.99491 * 7 5 3 11 11 C 1.46497 * 120.00291 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47071 * 270.00186 * 11 2 1 13 13 N 1.46497 * 109.47071 * 179.97438 * 12 11 2 14 14 C 1.46500 * 120.00067 * 269.99604 * 13 12 11 15 15 C 1.34781 * 120.00382 * 89.99717 * 13 12 11 16 16 O 1.21287 * 119.99683 * 3.27800 * 15 13 12 17 17 C 1.50695 * 120.00289 * 183.27538 * 15 13 12 18 18 C 1.50696 * 112.84921 * 65.40108 * 17 15 13 19 19 C 1.38242 * 119.99968 * 243.53756 * 18 17 15 20 20 C 1.38235 * 119.99954 * 179.74198 * 19 18 17 21 21 C 1.38245 * 119.99766 * 0.54077 * 20 19 18 22 22 C 1.38239 * 119.99723 * 359.73672 * 21 20 19 23 23 C 1.38228 * 120.00330 * 359.97438 * 22 21 20 24 24 C 1.53782 * 113.61471 * 294.20439 * 17 15 13 25 25 C 1.53777 * 87.08320 * 270.88683 * 24 17 15 26 26 H 1.09003 * 113.61801 * 89.11598 * 25 24 17 27 27 F 1.39901 * 113.61548 * 220.02029 * 25 24 17 28 28 C 1.53777 * 113.61572 * 196.71172 * 17 15 13 29 29 H 1.08993 * 109.46874 * 84.95376 * 1 2 3 30 30 H 1.08998 * 109.46654 * 204.95414 * 1 2 3 31 31 H 1.09000 * 109.46783 * 324.94784 * 1 2 3 32 32 H 0.97002 * 120.00063 * 7.24866 * 6 5 3 33 33 H 1.08994 * 109.47150 * 29.99842 * 11 2 1 34 34 H 1.08996 * 109.47025 * 150.00087 * 11 2 1 35 35 H 1.09006 * 109.47034 * 299.99411 * 12 11 2 36 36 H 1.08996 * 109.47614 * 59.99628 * 12 11 2 37 37 H 1.09001 * 109.47005 * 92.32751 * 14 13 12 38 38 H 1.09000 * 109.47636 * 212.32477 * 14 13 12 39 39 H 1.08995 * 109.47094 * 332.32516 * 14 13 12 40 40 H 1.07998 * 119.99908 * 0.02562 * 19 18 17 41 41 H 1.07996 * 119.99964 * 180.29551 * 20 19 18 42 42 H 1.07994 * 119.99913 * 179.76546 * 21 20 19 43 43 H 1.07994 * 119.99430 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99931 * 180.02562 * 23 22 21 45 45 H 1.09002 * 113.61668 * 25.43171 * 24 17 15 46 46 H 1.09001 * 113.61813 * 156.33348 * 24 17 15 47 47 H 1.09001 * 113.61623 * 203.66879 * 28 17 15 48 48 H 1.09005 * 113.61782 * 334.56585 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7669 2.0305 0.5538 5 6 3.3357 1.3027 -0.7118 6 7 3.5416 0.5544 -1.7749 7 14 4.6396 2.5216 -0.1608 8 1 4.1678 3.2366 1.0522 9 1 4.8905 3.5027 -1.2470 10 1 5.8968 1.7949 0.1500 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4438 14 6 2.4516 -4.2471 1.4446 15 6 4.5324 -2.9793 1.4437 16 8 5.1392 -1.9308 1.5031 17 6 5.2854 -4.2825 1.3697 18 6 5.0769 -5.0055 0.0640 19 6 4.4575 -6.2413 0.0494 20 6 4.2614 -6.9021 -1.1488 21 6 4.6948 -6.3321 -2.3314 22 6 5.3193 -5.0989 -2.3161 23 6 5.5100 -4.4354 -1.1185 24 6 5.0929 -5.1762 2.6063 25 6 6.3017 -4.4513 3.2210 26 1 6.0350 -3.5547 3.7807 27 9 7.1632 -5.2977 3.9271 28 6 6.7622 -4.1650 1.7820 29 1 -0.3633 0.0904 -1.0236 30 1 -0.3632 -0.9317 0.4336 31 1 -0.3633 0.8413 0.5902 32 1 2.8266 -0.0011 -2.1229 33 1 1.6086 -2.0285 -0.5129 34 1 3.1500 -1.1385 -0.5133 35 1 3.0417 -0.9498 1.9568 36 1 1.5002 -1.8398 1.9572 37 1 2.3058 -4.5831 0.4180 38 1 3.0218 -4.9960 1.9945 39 1 1.4820 -4.1061 1.9220 40 1 4.1227 -6.6884 0.9738 41 1 3.7733 -7.8654 -1.1607 42 1 4.5450 -6.8500 -3.2671 43 1 5.6581 -4.6539 -3.2399 44 1 5.9975 -3.4718 -1.1067 45 1 4.1582 -4.9930 3.1362 46 1 5.2704 -6.2341 2.4124 47 1 7.3961 -4.9463 1.3627 48 1 7.1752 -3.1654 1.6464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699003172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:46 Heat of formation + Delta-G solvation = -2.485838 kcal Electronic energy + Delta-G solvation = -30556.449915 eV Core-core repulsion = 26527.687088 eV Total energy + Delta-G solvation = -4028.762828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -47.66613 -41.10244 -38.73648 -37.17527 -36.03919 -34.92707 -31.31449 -31.12042 -30.97421 -29.21148 -26.84410 -26.13249 -25.71460 -25.29997 -23.54266 -22.42124 -21.76371 -21.12755 -20.16507 -18.41212 -17.60568 -17.22278 -16.61122 -16.28139 -15.97877 -15.55675 -15.14652 -14.94452 -14.60641 -14.58476 -14.14399 -13.96892 -13.68649 -13.45251 -13.44393 -13.09927 -12.79689 -12.78310 -12.72693 -12.57684 -12.39524 -11.98558 -11.73446 -11.63266 -11.40222 -11.34824 -11.13735 -10.98922 -10.84122 -10.60391 -10.55199 -10.35941 -9.99300 -9.95245 -9.58300 -9.32698 -8.92635 -8.67352 -8.40684 -8.24615 -6.77002 -5.97574 -3.31868 1.27419 1.39134 2.83120 3.23852 3.57333 3.66602 3.70519 3.75079 4.05741 4.09551 4.28938 4.44109 4.56417 4.68782 4.78708 4.92117 4.95062 5.08259 5.14134 5.17428 5.35199 5.38298 5.40101 5.48638 5.51097 5.56852 5.62709 5.68497 5.75621 5.83089 5.90442 5.93658 6.02719 6.11602 6.23035 6.27884 6.34326 6.41365 6.51872 6.56605 6.62641 6.73283 6.82349 6.86195 6.96013 7.36655 7.70606 8.14626 8.48720 8.63215 9.15798 9.86257 10.29887 11.19956 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.004467 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.909674 B = 6266.072728 C = 6877.748048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.598 5.598 3 C -0.361 4.361 4 H 0.051 0.949 5 C -0.008 4.008 6 N -0.897 5.897 7 Si 1.060 2.940 8 H -0.291 1.291 9 H -0.295 1.295 10 H -0.285 1.285 11 C 0.130 3.870 12 C 0.099 3.901 13 N -0.603 5.603 14 C 0.070 3.930 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.061 4.061 18 C -0.061 4.061 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.098 4.098 24 C -0.152 4.152 25 C 0.066 3.934 26 H 0.113 0.887 27 F -0.207 7.207 28 C -0.133 4.133 29 H 0.003 0.997 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 -18.412 5.394 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.322 5.322 3 C -0.490 4.490 4 H 0.069 0.931 5 C -0.212 4.212 6 N -0.535 5.535 7 Si 0.889 3.111 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.211 1.211 11 C 0.002 3.998 12 C -0.024 4.024 13 N -0.337 5.337 14 C -0.074 4.074 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.065 4.065 18 C -0.061 4.061 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.116 4.116 24 C -0.190 4.190 25 C 0.030 3.970 26 H 0.131 0.869 27 F -0.187 7.187 28 C -0.171 4.171 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.109 0.891 46 H 0.126 0.874 47 H 0.120 0.880 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.345 -17.279 5.154 18.339 hybrid contribution -1.834 -0.611 0.184 1.942 sum 1.511 -17.890 5.338 18.731 Atomic orbital electron populations 1.21075 0.85770 0.97823 0.97398 1.43762 0.99913 1.02149 1.86376 1.19832 1.08918 0.91172 1.29097 0.93127 1.25844 1.00511 1.01689 0.93178 1.70710 1.36941 1.27793 1.18043 0.83644 0.76749 0.75506 0.75187 1.21719 1.22218 1.21085 1.21207 0.99018 0.86483 0.93104 1.22431 0.94740 0.83450 1.01818 1.47815 1.05303 1.07689 1.72847 1.22080 0.97160 0.86083 1.02047 1.19571 0.82321 0.89194 0.77026 1.90786 1.67380 1.32411 1.48394 1.20607 0.97874 0.94404 0.93600 1.19157 0.99562 0.94617 0.92794 1.20996 0.99531 0.94581 0.98224 1.21060 1.00495 0.99940 0.92471 1.21168 0.98723 0.95849 0.98126 1.21178 0.98806 0.95012 0.98010 1.21123 0.98801 0.99850 0.91845 1.23940 0.99375 1.00570 0.95088 1.23094 0.89376 0.92753 0.91752 0.86937 1.92789 1.72001 1.72989 1.80948 1.23558 0.94449 1.05314 0.93766 0.97894 0.95615 0.94941 0.92252 0.95820 0.89771 0.89664 0.92312 0.92648 0.90839 0.91322 0.85914 0.86113 0.86208 0.85814 0.85594 0.89065 0.87362 0.88033 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.71 10.70 59.85 0.64 3.35 16 2 N -0.60 -15.41 2.62 -181.12 -0.47 -15.88 16 3 C -0.36 -10.42 9.39 -15.06 -0.14 -10.56 16 4 H 0.05 1.48 7.97 -52.49 -0.42 1.07 16 5 C -0.01 -0.23 4.79 -17.43 -0.08 -0.32 16 6 N -0.90 -27.54 12.18 55.49 0.68 -26.87 16 7 Si 1.06 26.89 30.00 -169.99 -5.10 21.79 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 11 C 0.13 3.07 5.19 -4.04 -0.02 3.05 16 12 C 0.10 2.01 5.80 -4.04 -0.02 1.98 16 13 N -0.60 -10.11 2.87 -181.57 -0.52 -10.63 16 14 C 0.07 0.85 8.87 59.85 0.53 1.38 16 15 C 0.53 9.42 6.21 -10.99 -0.07 9.36 16 16 O -0.52 -11.55 15.50 5.55 0.09 -11.46 16 17 C -0.06 -0.82 0.46 -156.01 -0.07 -0.89 16 18 C -0.06 -0.79 4.06 -104.62 -0.42 -1.21 16 19 C -0.12 -1.21 7.58 -39.58 -0.30 -1.51 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.10 -1.43 9.46 -39.59 -0.37 -1.80 16 24 C -0.15 -1.56 5.05 -25.92 -0.13 -1.69 16 25 C 0.07 0.79 5.39 -25.92 -0.14 0.65 16 26 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 27 F -0.21 -2.62 17.41 2.25 0.04 -2.58 16 28 C -0.13 -1.71 6.90 -25.92 -0.18 -1.89 16 29 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.03 0.47 8.03 -51.93 -0.42 0.06 16 31 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.27 8.29 7.43 -40.82 -0.30 7.99 16 33 H 0.02 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.08 2.35 5.55 -51.93 -0.29 2.06 16 35 H 0.08 2.00 7.38 -51.93 -0.38 1.62 16 36 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 37 H 0.05 0.69 7.59 -51.93 -0.39 0.30 16 38 H 0.07 0.71 3.44 -51.93 -0.18 0.53 16 39 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 40 H 0.12 1.00 5.96 -52.49 -0.31 0.68 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.09 0.85 6.21 -51.93 -0.32 0.52 16 46 H 0.11 0.93 6.66 -51.93 -0.35 0.58 16 47 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 48 H 0.10 1.47 7.34 -51.93 -0.38 1.09 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -34.00 383.96 -8.64 -42.64 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.15 Total: 2.45 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.98 Total: -5.24 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.32 Total: -53.38 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.10 Total: 21.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.00 -8.64 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699003172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.156 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds