Wall clock time and date at job start Tue Mar 31 2020 18:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99817 * 2 1 4 4 H 1.07999 * 120.00015 * 36.30580 * 3 2 1 5 5 C 1.38814 * 119.99996 * 216.30552 * 3 2 1 6 6 N 1.31621 * 119.99975 * 27.68779 * 5 3 2 7 7 Si 1.86797 * 120.00004 * 207.69099 * 5 3 2 8 8 H 1.48502 * 109.47227 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46962 * 239.99744 * 7 5 3 10 10 H 1.48503 * 109.47312 * 119.99491 * 7 5 3 11 11 C 1.46497 * 120.00291 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47071 * 270.00186 * 11 2 1 13 13 N 1.46497 * 109.47071 * 179.97438 * 12 11 2 14 14 C 1.46500 * 120.00067 * 269.99604 * 13 12 11 15 15 C 1.34781 * 120.00382 * 89.99717 * 13 12 11 16 16 O 1.21287 * 119.99683 * 3.27800 * 15 13 12 17 17 C 1.50695 * 120.00289 * 183.27538 * 15 13 12 18 18 C 1.50696 * 112.84921 * 65.40108 * 17 15 13 19 19 C 1.38242 * 119.99968 * 243.53756 * 18 17 15 20 20 C 1.38235 * 119.99954 * 179.74198 * 19 18 17 21 21 C 1.38245 * 119.99766 * 0.54077 * 20 19 18 22 22 C 1.38239 * 119.99723 * 359.73672 * 21 20 19 23 23 C 1.38228 * 120.00330 * 359.97438 * 22 21 20 24 24 C 1.53782 * 113.61471 * 294.20439 * 17 15 13 25 25 C 1.53777 * 87.08320 * 270.88683 * 24 17 15 26 26 H 1.09003 * 113.61801 * 89.11598 * 25 24 17 27 27 F 1.39901 * 113.61548 * 220.02029 * 25 24 17 28 28 C 1.53777 * 113.61572 * 196.71172 * 17 15 13 29 29 H 1.08993 * 109.46874 * 84.95376 * 1 2 3 30 30 H 1.08998 * 109.46654 * 204.95414 * 1 2 3 31 31 H 1.09000 * 109.46783 * 324.94784 * 1 2 3 32 32 H 0.97002 * 120.00063 * 7.24866 * 6 5 3 33 33 H 1.08994 * 109.47150 * 29.99842 * 11 2 1 34 34 H 1.08996 * 109.47025 * 150.00087 * 11 2 1 35 35 H 1.09006 * 109.47034 * 299.99411 * 12 11 2 36 36 H 1.08996 * 109.47614 * 59.99628 * 12 11 2 37 37 H 1.09001 * 109.47005 * 92.32751 * 14 13 12 38 38 H 1.09000 * 109.47636 * 212.32477 * 14 13 12 39 39 H 1.08995 * 109.47094 * 332.32516 * 14 13 12 40 40 H 1.07998 * 119.99908 * 0.02562 * 19 18 17 41 41 H 1.07996 * 119.99964 * 180.29551 * 20 19 18 42 42 H 1.07994 * 119.99913 * 179.76546 * 21 20 19 43 43 H 1.07994 * 119.99430 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99931 * 180.02562 * 23 22 21 45 45 H 1.09002 * 113.61668 * 25.43171 * 24 17 15 46 46 H 1.09001 * 113.61813 * 156.33348 * 24 17 15 47 47 H 1.09001 * 113.61623 * 203.66879 * 28 17 15 48 48 H 1.09005 * 113.61782 * 334.56585 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7669 2.0305 0.5538 5 6 3.3357 1.3027 -0.7118 6 7 3.5416 0.5544 -1.7749 7 14 4.6396 2.5216 -0.1608 8 1 4.1678 3.2366 1.0522 9 1 4.8905 3.5027 -1.2470 10 1 5.8968 1.7949 0.1500 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 7 3.1846 -2.9787 1.4438 14 6 2.4516 -4.2471 1.4446 15 6 4.5324 -2.9793 1.4437 16 8 5.1392 -1.9308 1.5031 17 6 5.2854 -4.2825 1.3697 18 6 5.0769 -5.0055 0.0640 19 6 4.4575 -6.2413 0.0494 20 6 4.2614 -6.9021 -1.1488 21 6 4.6948 -6.3321 -2.3314 22 6 5.3193 -5.0989 -2.3161 23 6 5.5100 -4.4354 -1.1185 24 6 5.0929 -5.1762 2.6063 25 6 6.3017 -4.4513 3.2210 26 1 6.0350 -3.5547 3.7807 27 9 7.1632 -5.2977 3.9271 28 6 6.7622 -4.1650 1.7820 29 1 -0.3633 0.0904 -1.0236 30 1 -0.3632 -0.9317 0.4336 31 1 -0.3633 0.8413 0.5902 32 1 2.8266 -0.0011 -2.1229 33 1 1.6086 -2.0285 -0.5129 34 1 3.1500 -1.1385 -0.5133 35 1 3.0417 -0.9498 1.9568 36 1 1.5002 -1.8398 1.9572 37 1 2.3058 -4.5831 0.4180 38 1 3.0218 -4.9960 1.9945 39 1 1.4820 -4.1061 1.9220 40 1 4.1227 -6.6884 0.9738 41 1 3.7733 -7.8654 -1.1607 42 1 4.5450 -6.8500 -3.2671 43 1 5.6581 -4.6539 -3.2399 44 1 5.9975 -3.4718 -1.1067 45 1 4.1582 -4.9930 3.1362 46 1 5.2704 -6.2341 2.4124 47 1 7.3961 -4.9463 1.3627 48 1 7.1752 -3.1654 1.6464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699003172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:45 Heat of formation + Delta-G solvation = -21.874227 kcal Electronic energy + Delta-G solvation = -30557.290659 eV Core-core repulsion = 26527.687088 eV Total energy + Delta-G solvation = -4029.603571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.64606 -42.24668 -39.85763 -38.46484 -37.71330 -36.50616 -33.38735 -32.13579 -31.89430 -30.81238 -27.95618 -27.48973 -27.13239 -26.83301 -25.11407 -23.38410 -22.86462 -22.57262 -21.72200 -19.63724 -19.39310 -18.57685 -17.62904 -17.55370 -17.14692 -16.65075 -16.42171 -16.24424 -16.10876 -15.65697 -15.56897 -15.47808 -15.44295 -15.19632 -14.43819 -14.35917 -14.14233 -13.94206 -13.80549 -13.74211 -13.55962 -13.27656 -13.17691 -13.01345 -12.90018 -12.70956 -12.63813 -12.58948 -12.26787 -11.99746 -11.95789 -11.87256 -11.54411 -11.44798 -11.33290 -10.90858 -10.50979 -9.87240 -9.78281 -9.63147 -8.91549 -8.21710 -5.58244 0.35220 0.48002 1.46214 1.49328 1.58851 1.70112 1.94105 2.58028 2.77316 3.08486 3.09903 3.16237 3.30587 3.40249 3.52767 3.66914 3.80413 4.01937 4.08310 4.12461 4.18432 4.24616 4.29307 4.39780 4.50516 4.52621 4.55779 4.61699 4.62225 4.62956 4.66050 4.75888 4.81456 4.86712 4.91287 4.98244 5.03415 5.05759 5.12456 5.18622 5.25945 5.53967 5.57363 5.61473 5.63357 5.85929 6.08375 6.32645 6.38059 7.03266 7.13736 7.70086 8.12989 8.88533 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.004467 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.909674 B = 6266.072728 C = 6877.748048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.617 5.617 3 C -0.362 4.362 4 H 0.044 0.956 5 C -0.056 4.056 6 N -0.922 5.922 7 Si 1.098 2.902 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.301 1.301 11 C 0.138 3.862 12 C 0.116 3.884 13 N -0.602 5.602 14 C 0.063 3.937 15 C 0.526 3.474 16 O -0.579 6.579 17 C -0.058 4.058 18 C -0.069 4.069 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.130 4.130 25 C 0.068 3.932 26 H 0.103 0.897 27 F -0.208 7.208 28 C -0.139 4.139 29 H -0.002 1.002 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.253 0.747 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.116 0.884 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -22.309 6.860 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.342 5.342 3 C -0.492 4.492 4 H 0.062 0.938 5 C -0.256 4.256 6 N -0.561 5.561 7 Si 0.924 3.076 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.228 1.228 11 C 0.011 3.989 12 C -0.009 4.009 13 N -0.334 5.334 14 C -0.079 4.079 15 C 0.314 3.686 16 O -0.458 6.458 17 C -0.061 4.061 18 C -0.069 4.069 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.167 4.167 25 C 0.032 3.968 26 H 0.121 0.879 27 F -0.189 7.189 28 C -0.177 4.177 29 H 0.016 0.984 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.101 0.899 45 H 0.129 0.871 46 H 0.159 0.841 47 H 0.135 0.865 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.177 -21.213 6.630 22.256 hybrid contribution -1.216 0.559 -0.323 1.377 sum -0.039 -20.654 6.307 21.595 Atomic orbital electron populations 1.21168 0.83222 1.00063 0.97486 1.44012 1.01708 1.01815 1.86646 1.19986 1.09166 0.92181 1.27830 0.93848 1.26918 1.02602 1.02932 0.93103 1.70822 1.36464 1.29276 1.19567 0.83125 0.74182 0.74268 0.76027 1.19432 1.20798 1.22830 1.21053 0.96702 0.86190 0.94984 1.21913 0.95644 0.84446 0.98871 1.47866 1.05275 1.08263 1.72018 1.22427 0.98305 0.84185 1.02940 1.20403 0.82636 0.90128 0.75408 1.90751 1.68751 1.35181 1.51095 1.20430 0.97183 0.92848 0.95680 1.19138 1.00590 0.95842 0.91369 1.21357 0.97843 0.92995 1.00160 1.21536 0.98973 1.00963 0.91479 1.21499 0.97505 0.94679 1.00073 1.21276 0.99958 0.96384 0.97222 1.20990 1.00969 0.99037 0.94005 1.23966 0.99188 1.01293 0.92207 1.23019 0.90137 0.92944 0.90734 0.87900 1.92787 1.72265 1.72908 1.80908 1.23601 0.94832 1.04034 0.95246 0.98416 0.91864 0.94444 0.93767 0.94382 0.94589 0.93818 0.89114 0.92632 0.87725 0.88924 0.82232 0.82216 0.83733 0.86243 0.89917 0.87065 0.84090 0.86533 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.26 10.70 127.77 1.37 6.63 16 2 N -0.62 -32.10 2.62 -726.95 -1.90 -34.00 16 3 C -0.36 -21.37 9.39 84.03 0.79 -20.59 16 4 H 0.04 2.59 7.97 -2.91 -0.02 2.57 16 5 C -0.06 -3.43 4.79 84.86 0.41 -3.03 16 6 N -0.92 -59.49 12.18 21.65 0.26 -59.23 16 7 Si 1.10 56.58 30.00 68.60 2.06 58.64 16 8 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 11 C 0.14 6.67 5.19 86.38 0.45 7.12 16 12 C 0.12 4.70 5.80 86.38 0.50 5.20 16 13 N -0.60 -19.77 2.87 -846.76 -2.43 -22.20 16 14 C 0.06 1.27 8.87 127.77 1.13 2.41 16 15 C 0.53 19.22 6.21 87.65 0.54 19.76 16 16 O -0.58 -28.20 15.50 -3.05 -0.05 -28.25 16 17 C -0.06 -1.51 0.46 -53.15 -0.02 -1.54 16 18 C -0.07 -1.70 4.06 -19.87 -0.08 -1.78 16 19 C -0.11 -1.75 7.58 22.27 0.17 -1.58 16 20 C -0.11 -1.69 10.05 22.27 0.22 -1.47 16 21 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 23 C -0.13 -4.07 9.46 22.27 0.21 -3.86 16 24 C -0.13 -2.19 5.05 31.12 0.16 -2.04 16 25 C 0.07 1.54 5.39 31.12 0.17 1.71 16 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 27 F -0.21 -4.89 17.41 44.97 0.78 -4.11 16 28 C -0.14 -3.70 6.90 31.12 0.21 -3.49 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 31 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.25 16.55 7.43 -92.71 -0.69 15.86 16 33 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.04 2.13 5.55 -2.39 -0.01 2.11 16 35 H 0.04 2.13 7.38 -2.38 -0.02 2.12 16 36 H 0.09 3.06 7.87 -2.39 -0.02 3.04 16 37 H 0.06 1.17 7.59 -2.39 -0.02 1.16 16 38 H 0.10 1.45 3.44 -2.39 -0.01 1.44 16 39 H 0.09 1.50 7.86 -2.39 -0.02 1.48 16 40 H 0.16 1.45 5.96 -2.91 -0.02 1.43 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.08 3.17 8.06 -2.91 -0.02 3.14 16 45 H 0.11 1.50 6.21 -2.39 -0.01 1.49 16 46 H 0.14 1.55 6.66 -2.39 -0.02 1.54 16 47 H 0.12 2.68 8.10 -2.39 -0.02 2.66 16 48 H 0.07 2.23 7.34 -2.38 -0.02 2.21 16 Total: -1.00 -81.83 383.96 6.44 -75.39 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.04 Total: 15.55 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.67 Total: -1.80 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -4.07 Total: -115.43 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.11 kcal Atomic # 14 Polarization: 56.58 SS G_CDS: 2.06 Total: 58.64 kcal Total: -81.83 6.44 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699003172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.518 kcal (2) G-P(sol) polarization free energy of solvation -81.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds