Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46998 * 2 1 4 4 C 1.46502 * 120.00295 * 276.03868 * 3 2 1 5 5 C 1.52993 * 109.47513 * 270.00339 * 4 3 2 6 6 N 1.46496 * 109.47282 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00282 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00253 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00067 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47199 * 89.99345 * 11 9 7 13 13 H 1.48498 * 109.47126 * 210.00025 * 11 9 7 14 14 H 1.48506 * 109.46671 * 329.99461 * 11 9 7 15 15 C 1.34781 * 119.99826 * 96.04675 * 3 2 1 16 16 O 1.21284 * 120.00077 * 175.65943 * 15 3 2 17 17 C 1.50698 * 120.00132 * 355.66147 * 15 3 2 18 18 C 1.53004 * 115.54830 * 71.02562 * 17 15 3 19 19 C 1.50700 * 109.47085 * 37.69563 * 18 17 15 20 20 C 1.38242 * 119.97063 * 84.28488 * 19 18 17 21 21 C 1.38202 * 120.02350 * 180.02562 * 20 19 18 22 22 C 1.38463 * 119.97229 * 0.23894 * 21 20 19 23 23 F 1.35104 * 120.02354 * 179.72756 * 22 21 20 24 24 C 1.38460 * 119.94812 * 359.48697 * 22 21 20 25 25 C 1.38203 * 119.97334 * 0.53126 * 24 22 21 26 26 C 1.53000 * 117.51972 * 216.72978 * 17 15 3 27 27 C 1.52995 * 117.49709 * 285.36117 * 17 15 3 28 28 H 1.08996 * 109.47201 * 65.12664 * 1 2 3 29 29 H 1.09001 * 109.47303 * 185.12321 * 1 2 3 30 30 H 1.09004 * 109.47110 * 305.12255 * 1 2 3 31 31 H 1.09001 * 109.47179 * 240.00161 * 2 1 3 32 32 H 1.09000 * 109.47106 * 120.00148 * 2 1 3 33 33 H 1.09002 * 109.46699 * 30.00722 * 4 3 2 34 34 H 1.09000 * 109.46888 * 150.00062 * 4 3 2 35 35 H 1.09002 * 109.47450 * 299.99923 * 5 4 3 36 36 H 1.09000 * 109.47270 * 59.99956 * 5 4 3 37 37 H 0.97009 * 119.99821 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00194 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47318 * 277.69319 * 18 17 15 40 40 H 1.09002 * 109.46582 * 157.69302 * 18 17 15 41 41 H 1.07999 * 119.99394 * 0.02562 * 20 19 18 42 42 H 1.08003 * 120.01548 * 179.97438 * 21 20 19 43 43 H 1.07996 * 120.01330 * 180.25926 * 24 22 21 44 44 H 1.07992 * 119.98628 * 179.74740 * 25 24 22 45 45 H 1.08993 * 117.50106 * 214.97007 * 26 17 15 46 46 H 1.09000 * 117.49757 * 359.97438 * 26 17 15 47 47 H 1.09003 * 117.50406 * 359.97361 * 27 17 15 48 48 H 1.09007 * 117.50111 * 144.97336 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1366 2.1164 -1.2617 5 6 3.5302 1.8942 -1.8527 6 7 3.6482 2.6288 -3.1146 7 6 4.8151 2.5788 -3.8295 8 1 5.6486 1.9981 -3.4628 9 6 4.9271 3.2754 -5.0249 10 7 3.9116 3.9835 -5.4716 11 14 6.5187 3.2066 -6.0005 12 1 6.4656 2.0703 -6.9548 13 1 6.6944 4.4758 -6.7511 14 1 7.6614 3.0192 -5.0707 15 6 2.3588 1.9755 1.1608 16 8 2.8369 3.0902 1.1539 17 6 2.1456 1.2552 2.4671 18 6 3.0815 0.0734 2.7294 19 6 4.4595 0.4000 2.2142 20 6 5.3389 1.1189 3.0022 21 6 6.6028 1.4195 2.5306 22 6 6.9862 1.0045 1.2665 23 9 8.2195 1.3025 0.8023 24 6 6.1065 0.2797 0.4805 25 6 4.8430 -0.0194 0.9541 26 6 1.7077 2.0905 3.6718 27 6 0.7116 1.1503 2.9901 28 1 -0.3633 0.4322 -0.9323 29 1 -0.3634 -1.0236 0.0918 30 1 -0.3633 0.5913 0.8406 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3830 1.7580 -1.9630 34 1 1.9852 3.1800 -1.0779 35 1 4.2837 2.2525 -1.1514 36 1 3.6815 0.8305 -2.0365 37 1 2.8997 3.1507 -3.4439 38 1 3.9897 4.4700 -6.3072 39 1 2.7023 -0.8109 2.2174 40 1 3.1306 -0.1201 3.8010 41 1 5.0383 1.4458 3.9866 42 1 7.2896 1.9815 3.1461 43 1 6.4059 -0.0481 -0.5040 44 1 4.1553 -0.5812 0.3396 45 1 2.0863 1.7983 4.6512 46 1 1.5742 3.1616 3.5198 47 1 -0.0776 1.6027 2.3896 48 1 0.4348 0.2393 3.5208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699206803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -13.448043 kcal Electronic energy + Delta-G solvation = -30159.890404 eV Core-core repulsion = 26130.652219 eV Total energy + Delta-G solvation = -4029.238185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.75074 -40.70736 -38.82610 -37.05645 -36.06758 -34.46539 -32.23051 -31.66307 -31.10961 -30.26290 -27.97003 -26.94662 -24.33149 -23.68231 -23.10107 -22.68962 -22.41884 -21.51527 -20.89630 -18.52644 -17.61566 -17.10641 -16.95113 -16.40275 -16.04977 -15.58805 -15.38821 -15.34967 -15.00058 -14.36140 -14.10054 -13.96340 -13.78764 -13.70266 -13.48846 -13.40814 -13.19780 -13.03275 -12.89295 -12.60969 -12.41454 -12.25884 -11.83396 -11.82341 -11.59468 -11.21782 -11.07624 -10.97576 -10.89802 -10.84080 -10.69527 -10.62247 -10.21093 -10.06287 -9.72467 -9.49298 -9.05734 -8.82236 -8.51578 -8.44075 -6.88001 -5.71802 -3.00442 1.14286 1.28142 2.75347 3.04046 3.45436 3.47246 3.52751 3.55052 3.59692 4.28894 4.34954 4.44906 4.53337 4.63443 4.65959 4.72070 4.81688 4.94256 5.01326 5.14552 5.17019 5.21316 5.29427 5.37823 5.43245 5.44460 5.56427 5.60899 5.64724 5.69788 5.71927 5.79066 5.86910 5.89309 5.90280 6.04120 6.09124 6.12980 6.17913 6.19888 6.25945 6.46248 6.64667 6.79962 6.92427 6.99882 7.59759 7.74572 8.39551 8.47086 9.57809 10.14464 10.49307 11.51226 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.004423 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.945575 B = 6329.022250 C = 8286.376457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 N -0.600 5.600 4 C 0.109 3.891 5 C 0.147 3.853 6 N -0.730 5.730 7 C -0.234 4.234 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.552 3.448 16 O -0.525 6.525 17 C -0.150 4.150 18 C -0.036 4.036 19 C -0.102 4.102 20 C -0.077 4.077 21 C -0.154 4.154 22 C 0.101 3.899 23 F -0.140 7.140 24 C -0.143 4.143 25 C -0.077 4.077 26 C -0.145 4.145 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.015 0.985 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -12.665 21.674 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 N -0.333 5.333 4 C -0.014 4.014 5 C 0.018 3.982 6 N -0.375 5.375 7 C -0.365 4.365 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.338 3.662 16 O -0.400 6.400 17 C -0.153 4.153 18 C -0.073 4.073 19 C -0.102 4.102 20 C -0.095 4.095 21 C -0.173 4.173 22 C 0.082 3.918 23 F -0.119 7.119 24 C -0.162 4.162 25 C -0.095 4.095 26 C -0.183 4.183 27 C -0.198 4.198 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.091 -12.076 21.585 25.472 hybrid contribution 0.879 0.278 -1.033 1.384 sum -5.212 -11.799 20.552 24.264 Atomic orbital electron populations 1.22281 0.96003 1.02091 1.02806 1.21789 0.94600 0.82982 1.03434 1.47807 1.64924 1.14044 1.06544 1.21677 0.98850 0.97432 0.83420 1.20877 0.93609 0.94931 0.88771 1.42212 1.15793 1.58256 1.21196 1.19178 0.91771 1.24482 1.01108 0.91330 1.24716 0.97715 1.00155 0.98331 1.69658 1.30269 1.35742 1.22628 0.86206 0.83159 0.76936 0.80054 1.21729 1.21726 1.20716 1.19362 0.77399 0.85620 0.83813 1.90739 1.42628 1.19829 1.86806 1.21427 0.98287 1.00894 0.94676 1.20187 0.90074 0.95288 1.01797 1.19712 0.95662 0.99925 0.94928 1.20751 0.92236 0.96674 0.99820 1.21078 0.98156 1.02908 0.95131 1.17750 0.81001 0.99404 0.93681 1.91506 1.39989 1.91506 1.88891 1.21176 0.94229 1.00188 1.00560 1.20868 0.95120 0.98817 0.94664 1.23062 1.01490 0.98547 0.95153 1.23157 0.91190 1.02294 1.03120 0.92222 0.91723 0.92054 0.90314 0.89745 0.90651 0.90085 0.95816 0.96747 0.78361 0.93552 0.89692 0.89708 0.85381 0.84994 0.84572 0.85370 0.87962 0.87969 0.88184 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.15 37.16 0.38 -1.05 16 2 C 0.10 0.93 5.09 -4.04 -0.02 0.91 16 3 N -0.60 -8.25 2.47 -173.69 -0.43 -8.68 16 4 C 0.11 1.90 5.51 -4.04 -0.02 1.87 16 5 C 0.15 3.13 6.58 -4.05 -0.03 3.11 16 6 N -0.73 -19.32 5.60 -59.91 -0.34 -19.66 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 11 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.55 8.13 5.40 -10.98 -0.06 8.07 16 16 O -0.53 -10.40 16.47 5.55 0.09 -10.31 16 17 C -0.15 -1.51 1.17 -155.66 -0.18 -1.69 16 18 C -0.04 -0.30 4.95 -27.88 -0.14 -0.44 16 19 C -0.10 -1.16 4.23 -104.62 -0.44 -1.60 16 20 C -0.08 -0.89 9.72 -39.59 -0.38 -1.27 16 21 C -0.15 -1.99 10.03 -39.51 -0.40 -2.39 16 22 C 0.10 1.52 7.30 -39.42 -0.29 1.23 16 23 F -0.14 -2.29 17.27 2.25 0.04 -2.25 16 24 C -0.14 -2.08 10.03 -39.51 -0.40 -2.48 16 25 C -0.08 -0.97 9.23 -39.59 -0.37 -1.34 16 26 C -0.15 -1.29 9.72 -26.73 -0.26 -1.55 16 27 C -0.16 -1.20 8.70 -26.73 -0.23 -1.43 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 5.45 -51.93 -0.28 0.21 16 31 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.08 0.66 3.92 -51.93 -0.20 0.46 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.08 1.60 7.49 -51.93 -0.39 1.21 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.38 10.56 7.67 -40.82 -0.31 10.24 16 38 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 0.56 5.82 -51.93 -0.30 0.26 16 40 H 0.08 0.53 7.91 -51.93 -0.41 0.11 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 43 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 44 H 0.13 1.44 7.08 -52.49 -0.37 1.07 16 45 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 46 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 47 H 0.10 0.81 6.72 -51.93 -0.35 0.46 16 48 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -35.41 394.47 -9.30 -44.71 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.23 Total: 7.86 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.08 Total: -7.52 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.04 Total: -56.60 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.41 -9.30 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699206803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.263 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds