Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46998 * 2 1 4 4 C 1.46502 * 120.00295 * 276.03868 * 3 2 1 5 5 C 1.52993 * 109.47513 * 270.00339 * 4 3 2 6 6 N 1.46496 * 109.47282 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00282 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00253 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00067 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47199 * 89.99345 * 11 9 7 13 13 H 1.48498 * 109.47126 * 210.00025 * 11 9 7 14 14 H 1.48506 * 109.46671 * 329.99461 * 11 9 7 15 15 C 1.34781 * 119.99826 * 96.04675 * 3 2 1 16 16 O 1.21284 * 120.00077 * 175.65943 * 15 3 2 17 17 C 1.50698 * 120.00132 * 355.66147 * 15 3 2 18 18 C 1.53004 * 115.54830 * 71.02562 * 17 15 3 19 19 C 1.50700 * 109.47085 * 37.69563 * 18 17 15 20 20 C 1.38242 * 119.97063 * 84.28488 * 19 18 17 21 21 C 1.38202 * 120.02350 * 180.02562 * 20 19 18 22 22 C 1.38463 * 119.97229 * 0.23894 * 21 20 19 23 23 F 1.35104 * 120.02354 * 179.72756 * 22 21 20 24 24 C 1.38460 * 119.94812 * 359.48697 * 22 21 20 25 25 C 1.38203 * 119.97334 * 0.53126 * 24 22 21 26 26 C 1.53000 * 117.51972 * 216.72978 * 17 15 3 27 27 C 1.52995 * 117.49709 * 285.36117 * 17 15 3 28 28 H 1.08996 * 109.47201 * 65.12664 * 1 2 3 29 29 H 1.09001 * 109.47303 * 185.12321 * 1 2 3 30 30 H 1.09004 * 109.47110 * 305.12255 * 1 2 3 31 31 H 1.09001 * 109.47179 * 240.00161 * 2 1 3 32 32 H 1.09000 * 109.47106 * 120.00148 * 2 1 3 33 33 H 1.09002 * 109.46699 * 30.00722 * 4 3 2 34 34 H 1.09000 * 109.46888 * 150.00062 * 4 3 2 35 35 H 1.09002 * 109.47450 * 299.99923 * 5 4 3 36 36 H 1.09000 * 109.47270 * 59.99956 * 5 4 3 37 37 H 0.97009 * 119.99821 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00194 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47318 * 277.69319 * 18 17 15 40 40 H 1.09002 * 109.46582 * 157.69302 * 18 17 15 41 41 H 1.07999 * 119.99394 * 0.02562 * 20 19 18 42 42 H 1.08003 * 120.01548 * 179.97438 * 21 20 19 43 43 H 1.07996 * 120.01330 * 180.25926 * 24 22 21 44 44 H 1.07992 * 119.98628 * 179.74740 * 25 24 22 45 45 H 1.08993 * 117.50106 * 214.97007 * 26 17 15 46 46 H 1.09000 * 117.49757 * 359.97438 * 26 17 15 47 47 H 1.09003 * 117.50406 * 359.97361 * 27 17 15 48 48 H 1.09007 * 117.50111 * 144.97336 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1366 2.1164 -1.2617 5 6 3.5302 1.8942 -1.8527 6 7 3.6482 2.6288 -3.1146 7 6 4.8151 2.5788 -3.8295 8 1 5.6486 1.9981 -3.4628 9 6 4.9271 3.2754 -5.0249 10 7 3.9116 3.9835 -5.4716 11 14 6.5187 3.2066 -6.0005 12 1 6.4656 2.0703 -6.9548 13 1 6.6944 4.4758 -6.7511 14 1 7.6614 3.0192 -5.0707 15 6 2.3588 1.9755 1.1608 16 8 2.8369 3.0902 1.1539 17 6 2.1456 1.2552 2.4671 18 6 3.0815 0.0734 2.7294 19 6 4.4595 0.4000 2.2142 20 6 5.3389 1.1189 3.0022 21 6 6.6028 1.4195 2.5306 22 6 6.9862 1.0045 1.2665 23 9 8.2195 1.3025 0.8023 24 6 6.1065 0.2797 0.4805 25 6 4.8430 -0.0194 0.9541 26 6 1.7077 2.0905 3.6718 27 6 0.7116 1.1503 2.9901 28 1 -0.3633 0.4322 -0.9323 29 1 -0.3634 -1.0236 0.0918 30 1 -0.3633 0.5913 0.8406 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3830 1.7580 -1.9630 34 1 1.9852 3.1800 -1.0779 35 1 4.2837 2.2525 -1.1514 36 1 3.6815 0.8305 -2.0365 37 1 2.8997 3.1507 -3.4439 38 1 3.9897 4.4700 -6.3072 39 1 2.7023 -0.8109 2.2174 40 1 3.1306 -0.1201 3.8010 41 1 5.0383 1.4458 3.9866 42 1 7.2896 1.9815 3.1461 43 1 6.4059 -0.0481 -0.5040 44 1 4.1553 -0.5812 0.3396 45 1 2.0863 1.7983 4.6512 46 1 1.5742 3.1616 3.5198 47 1 -0.0776 1.6027 2.3896 48 1 0.4348 0.2393 3.5208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699206803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = -34.765051 kcal Electronic energy + Delta-G solvation = -30160.814779 eV Core-core repulsion = 26130.652219 eV Total energy + Delta-G solvation = -4030.162559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.94659 -41.69548 -39.84578 -38.03096 -37.32771 -36.29305 -33.57045 -33.06095 -32.09885 -31.50851 -29.50381 -27.89361 -26.06284 -24.65539 -24.18295 -23.85381 -23.27214 -22.76828 -22.05299 -19.69735 -19.09305 -18.67856 -17.90179 -17.50360 -17.29869 -16.75456 -16.64844 -16.36793 -16.31772 -15.78314 -15.46548 -15.22441 -15.06118 -14.81847 -14.63020 -14.56471 -14.48391 -14.39995 -14.02994 -13.48764 -13.35820 -13.14224 -13.08996 -12.92678 -12.75666 -12.70327 -12.58525 -12.42817 -12.19249 -12.14553 -11.96126 -11.90402 -11.70627 -11.40611 -11.01269 -10.87517 -10.63899 -10.06024 -9.65996 -9.52299 -9.08912 -8.01103 -5.31223 0.12955 0.28320 1.41352 1.44064 1.52485 1.66928 1.96200 2.51872 2.55993 2.81183 3.30507 3.32090 3.45938 3.67932 3.73654 3.87883 3.94315 3.98101 4.00957 4.07750 4.14936 4.21854 4.30148 4.30519 4.36660 4.50734 4.53086 4.57230 4.77129 4.80868 4.83926 4.88632 4.96248 4.97065 5.02816 5.06202 5.09879 5.12042 5.16865 5.20727 5.27360 5.29867 5.40138 5.47921 5.53497 5.62886 5.94005 6.20744 6.51422 7.26535 7.27842 7.98796 8.24163 9.22317 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.004423 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.945575 B = 6329.022250 C = 8286.376457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.596 5.596 4 C 0.123 3.877 5 C 0.159 3.841 6 N -0.742 5.742 7 C -0.247 4.247 8 H 0.068 0.932 9 C -0.069 4.069 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.545 3.455 16 O -0.589 6.589 17 C -0.161 4.161 18 C -0.032 4.032 19 C -0.098 4.098 20 C -0.079 4.079 21 C -0.161 4.161 22 C 0.064 3.936 23 F -0.157 7.157 24 C -0.167 4.167 25 C -0.085 4.085 26 C -0.151 4.151 27 C -0.132 4.132 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.051 0.949 35 H -0.006 1.006 36 H 0.028 0.972 37 H 0.375 0.625 38 H 0.254 0.746 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 -15.288 24.181 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 N -0.327 5.327 4 C -0.001 4.001 5 C 0.031 3.969 6 N -0.385 5.385 7 C -0.378 4.378 8 H 0.086 0.914 9 C -0.262 4.262 10 N -0.617 5.617 11 Si 0.800 3.200 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.334 3.666 16 O -0.468 6.468 17 C -0.164 4.164 18 C -0.068 4.068 19 C -0.098 4.098 20 C -0.096 4.096 21 C -0.179 4.179 22 C 0.045 3.955 23 F -0.136 7.136 24 C -0.186 4.186 25 C -0.103 4.103 26 C -0.188 4.188 27 C -0.169 4.169 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.012 0.988 36 H 0.046 0.954 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.178 0.822 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.152 0.848 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.812 -14.766 24.120 29.340 hybrid contribution 1.356 1.110 -1.763 2.486 sum -6.457 -13.657 22.357 26.982 Atomic orbital electron populations 1.22251 0.94343 1.03892 1.02185 1.22142 0.95953 0.80470 1.04808 1.47906 1.64498 1.15408 1.04935 1.21257 0.96627 0.96590 0.85608 1.20853 0.95280 0.94485 0.86276 1.42391 1.14871 1.58690 1.22557 1.19500 0.92582 1.24233 1.01531 0.91442 1.25542 1.01067 1.00112 0.99459 1.69806 1.32205 1.36659 1.23001 0.85171 0.79241 0.77005 0.78545 1.20489 1.21732 1.20210 1.20319 0.75768 0.85064 0.85447 1.90711 1.45433 1.22840 1.87822 1.21323 1.01199 1.01754 0.92163 1.20354 0.87124 0.94993 1.04352 1.20164 0.97314 0.98329 0.94011 1.21211 0.91421 0.95843 1.01171 1.21378 0.99400 1.02744 0.94401 1.18134 0.80882 1.01320 0.95161 1.91446 1.41018 1.91891 1.89272 1.21282 0.95582 1.01300 1.00409 1.21096 0.94372 0.99086 0.95701 1.23180 1.02351 0.97289 0.95992 1.23323 0.89047 1.03071 1.01423 0.93895 0.88803 0.91543 0.90415 0.86944 0.89093 0.93052 0.98818 0.95441 0.79349 0.93761 0.87267 0.85930 0.82200 0.83535 0.85880 0.84080 0.84845 0.90913 0.89017 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.15 71.98 0.73 -1.47 16 2 C 0.09 1.46 5.09 86.38 0.44 1.90 16 3 N -0.60 -15.93 2.47 -821.82 -2.03 -17.97 16 4 C 0.12 4.43 5.51 86.38 0.48 4.90 16 5 C 0.16 7.05 6.58 86.38 0.57 7.61 16 6 N -0.74 -40.75 5.60 -343.47 -1.92 -42.67 16 7 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 10 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 11 Si 0.97 48.44 29.55 68.60 2.03 50.47 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 15 C 0.54 15.67 5.40 87.66 0.47 16.14 16 16 O -0.59 -24.18 16.47 -3.04 -0.05 -24.23 16 17 C -0.16 -2.69 1.17 -52.93 -0.06 -2.75 16 18 C -0.03 -0.37 4.95 29.85 0.15 -0.22 16 19 C -0.10 -1.99 4.23 -19.86 -0.08 -2.07 16 20 C -0.08 -1.66 9.72 22.26 0.22 -1.45 16 21 C -0.16 -4.17 10.03 22.31 0.22 -3.94 16 22 C 0.06 2.04 7.30 22.38 0.16 2.20 16 23 F -0.16 -5.53 17.27 44.97 0.78 -4.76 16 24 C -0.17 -5.14 10.03 22.31 0.22 -4.92 16 25 C -0.08 -2.09 9.23 22.26 0.21 -1.89 16 26 C -0.15 -2.16 9.72 30.60 0.30 -1.86 16 27 C -0.13 -1.33 8.70 30.59 0.27 -1.07 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.81 5.45 -2.39 -0.01 0.80 16 31 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.11 1.24 3.92 -2.39 -0.01 1.23 16 33 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 34 H 0.05 2.15 7.49 -2.39 -0.02 2.13 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.37 21.52 7.67 -92.70 -0.71 20.81 16 38 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 39 H 0.11 0.76 5.82 -2.39 -0.01 0.75 16 40 H 0.12 0.64 7.91 -2.39 -0.02 0.63 16 41 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.14 2.96 7.08 -2.91 -0.02 2.94 16 45 H 0.13 1.07 8.07 -2.39 -0.02 1.05 16 46 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 47 H 0.09 1.14 6.72 -2.39 -0.02 1.12 16 48 H 0.14 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -82.85 394.47 4.93 -77.92 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.26 Total: 28.71 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.59 Total: -6.50 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -3.67 Total: -121.61 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -82.85 4.93 -77.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699206803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.153 kcal (2) G-P(sol) polarization free energy of solvation -82.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds