Wall clock time and date at job start Tue Mar 31 2020 18:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99978 * 2 1 4 4 C 1.52994 * 109.47472 * 269.99994 * 3 2 1 5 5 C 1.52999 * 109.47243 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46805 * 180.02562 * 5 4 3 7 7 C 1.36933 * 119.99608 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00441 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99812 * 179.97438 * 7 6 5 10 10 N 1.31610 * 120.00092 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99814 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47381 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47059 * 120.00283 * 11 9 7 14 14 H 1.48503 * 109.47087 * 240.00060 * 11 9 7 15 15 C 1.34772 * 120.00031 * 180.02562 * 2 1 3 16 16 O 1.21287 * 120.00428 * 174.63280 * 15 2 1 17 17 C 1.50700 * 120.00147 * 354.62276 * 15 2 1 18 18 C 1.52996 * 115.55099 * 290.13606 * 17 15 2 19 19 C 1.50699 * 109.46963 * 294.48348 * 18 17 15 20 20 C 1.38223 * 120.01219 * 266.54119 * 19 18 17 21 21 C 1.38228 * 120.02143 * 179.72268 * 20 19 18 22 22 C 1.38261 * 120.05112 * 0.55240 * 21 20 19 23 23 C 1.38175 * 120.02844 * 359.72308 * 22 21 20 24 24 C 1.38437 * 120.01316 * 86.81633 * 19 18 17 25 25 F 1.35097 * 120.02132 * 0.02562 * 24 19 18 26 26 C 1.53000 * 117.50086 * 144.45622 * 17 15 2 27 27 C 1.53006 * 117.49429 * 75.79784 * 17 15 2 28 28 H 1.09000 * 109.47076 * 93.85590 * 1 2 3 29 29 H 1.08994 * 109.47133 * 213.85464 * 1 2 3 30 30 H 1.09005 * 109.46718 * 333.85647 * 1 2 3 31 31 H 1.09002 * 109.46833 * 149.99982 * 3 2 1 32 32 H 1.09001 * 109.46980 * 30.00599 * 3 2 1 33 33 H 1.09009 * 109.47269 * 300.00456 * 4 3 2 34 34 H 1.09000 * 109.47055 * 59.99612 * 4 3 2 35 35 H 1.08998 * 109.46854 * 299.99689 * 5 4 3 36 36 H 1.08991 * 109.47132 * 60.00453 * 5 4 3 37 37 H 0.96999 * 119.99930 * 359.97438 * 6 5 4 38 38 H 0.97007 * 120.00155 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.47655 * 54.48866 * 18 17 15 40 40 H 1.09005 * 109.46925 * 174.48924 * 18 17 15 41 41 H 1.07998 * 119.99115 * 359.97438 * 20 19 18 42 42 H 1.07997 * 119.97151 * 180.27687 * 21 20 19 43 43 H 1.08007 * 119.98948 * 179.74457 * 22 21 20 44 44 H 1.08003 * 120.01174 * 180.02562 * 23 22 21 45 45 H 1.09008 * 117.49294 * 0.02562 * 26 17 15 46 46 H 1.08998 * 117.49841 * 145.02127 * 26 17 15 47 47 H 1.08992 * 117.49825 * 214.97949 * 27 17 15 48 48 H 1.08998 * 117.49578 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7105 -1.4424 5 6 3.2181 3.0352 -1.4423 6 7 3.4618 3.4584 -2.8236 7 6 4.1357 4.6239 -3.0738 8 1 4.4873 5.2313 -2.2529 9 6 4.3670 5.0246 -4.3825 10 7 3.9391 4.2842 -5.3829 11 14 5.2858 6.6149 -4.7238 12 1 5.6580 7.2574 -3.4377 13 1 6.5151 6.3190 -5.5027 14 1 4.4154 7.5322 -5.5023 15 6 2.1389 -1.1672 -0.0005 16 8 3.3478 -1.1695 -0.0988 17 6 1.3904 -2.4695 0.1212 18 6 0.7572 -2.7415 1.4872 19 6 1.8422 -2.9045 2.5202 20 6 2.3220 -4.1641 2.8262 21 6 3.3212 -4.3133 3.7696 22 6 3.8338 -3.2041 4.4165 23 6 3.3518 -1.9444 4.1164 24 6 2.3547 -1.7932 3.1674 25 9 1.8822 -0.5621 2.8735 26 6 1.9297 -3.6699 -0.6592 27 6 0.6450 -2.9741 -1.1161 28 1 -0.3633 -0.0691 -1.0253 29 1 -0.3633 -0.8534 0.5725 30 1 -0.3633 0.9226 0.4528 31 1 3.1500 1.1384 0.5139 32 1 1.6085 2.0284 0.5139 33 1 3.0417 0.9508 -1.9563 34 1 1.5002 1.8408 -1.9563 35 1 2.6294 3.7950 -0.9284 36 1 4.1705 2.9044 -0.9287 37 1 3.1463 2.9127 -3.5609 38 1 4.1004 4.5645 -6.2975 39 1 0.1152 -1.9049 1.7633 40 1 0.1633 -3.6541 1.4370 41 1 1.9189 -5.0317 2.3250 42 1 3.6986 -5.2975 4.0047 43 1 4.6117 -3.3223 5.1564 44 1 3.7527 -1.0781 4.6216 45 1 2.8262 -3.5177 -1.2603 46 1 1.8332 -4.6535 -0.1996 47 1 -0.2961 -3.5003 -0.9568 48 1 0.6957 -2.3639 -2.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699540126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:31 Heat of formation + Delta-G solvation = -17.328801 kcal Electronic energy + Delta-G solvation = -29165.834166 eV Core-core repulsion = 25136.427699 eV Total energy + Delta-G solvation = -4029.406467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.01526 -40.55307 -39.14011 -37.14701 -35.94452 -34.70954 -32.73474 -32.14008 -30.79036 -29.79995 -27.71097 -26.85739 -25.65027 -23.48399 -23.05204 -22.70033 -22.27010 -21.45515 -20.75740 -18.69257 -17.81796 -16.99213 -16.93447 -16.68969 -16.11680 -16.00555 -15.84823 -15.29691 -14.83409 -14.52100 -14.48390 -14.38446 -14.05629 -13.81088 -13.42954 -13.20506 -13.10651 -12.91955 -12.78702 -12.76598 -12.37418 -12.25712 -11.97342 -11.79195 -11.76345 -11.68286 -11.40526 -10.87548 -10.82007 -10.78895 -10.67069 -10.33596 -10.27088 -9.99433 -9.68768 -9.57199 -9.22459 -8.87252 -8.81194 -8.52262 -6.84912 -5.70154 -2.98426 0.88981 0.94780 2.64595 2.98594 3.26593 3.47625 3.49311 3.52799 3.55493 4.04658 4.20316 4.35629 4.43667 4.49038 4.61327 4.65432 4.66071 4.82210 4.92451 4.98664 5.08384 5.25728 5.26261 5.31720 5.35972 5.37431 5.52523 5.55071 5.58232 5.63331 5.68088 5.72893 5.78175 5.80474 5.90184 5.90453 6.02880 6.03826 6.11323 6.18851 6.38648 6.47657 6.63327 6.66264 6.94997 6.97724 7.46532 7.76372 8.28217 8.48915 9.59679 10.18976 10.53833 11.53170 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002481 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.680874 B =11283.814718 C =11910.481060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.604 5.604 3 C 0.123 3.877 4 C -0.138 4.138 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.550 3.450 16 O -0.528 6.528 17 C -0.153 4.153 18 C -0.039 4.039 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.152 4.152 24 C 0.109 3.891 25 F -0.132 7.132 26 C -0.142 4.142 27 C -0.157 4.157 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -22.101 20.522 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.337 5.337 3 C 0.001 3.999 4 C -0.177 4.177 5 C 0.029 3.971 6 N -0.377 5.377 7 C -0.367 4.367 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.337 3.663 16 O -0.404 6.404 17 C -0.157 4.157 18 C -0.076 4.076 19 C -0.116 4.116 20 C -0.102 4.102 21 C -0.149 4.149 22 C -0.112 4.112 23 C -0.171 4.171 24 C 0.090 3.910 25 F -0.111 7.111 26 C -0.179 4.179 27 C -0.195 4.195 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.069 -21.868 20.501 31.621 hybrid contribution 0.312 1.043 -0.600 1.243 sum -9.757 -20.826 19.901 30.413 Atomic orbital electron populations 1.21906 0.79801 1.03039 1.01920 1.47698 1.06843 1.05986 1.73156 1.21471 0.97313 0.83394 0.97735 1.22049 1.00959 0.98850 0.95838 1.20538 0.96009 0.91964 0.88629 1.42368 1.68261 1.25973 1.01143 1.19303 1.27499 0.98102 0.91817 0.91115 1.24755 1.01853 0.99102 0.95567 1.69678 1.51739 1.38886 0.98094 0.86099 0.79178 0.83107 0.77739 1.20545 1.21879 1.21895 1.19358 0.87105 0.83846 0.76022 1.90721 1.14014 1.86889 1.48736 1.21355 1.05387 0.94947 0.93965 1.20118 0.94756 1.03476 0.89254 1.19777 1.00230 0.92753 0.98800 1.20884 0.96418 0.95884 0.97061 1.21170 0.97405 0.99088 0.97279 1.21007 0.99180 0.91624 0.99361 1.21173 0.97611 0.99242 0.99080 1.17586 0.96190 0.79863 0.97403 1.91526 1.87058 1.40207 1.92259 1.23000 0.98218 0.95011 1.01681 1.23159 0.96719 1.03072 0.96503 0.92533 0.91073 0.90924 0.90165 0.90613 0.91664 0.92060 0.96433 0.96284 0.78349 0.93625 0.89502 0.89333 0.85244 0.85417 0.85160 0.84819 0.87776 0.88033 0.87727 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.98 59.85 0.60 1.33 16 2 N -0.60 -8.07 2.64 -181.57 -0.48 -8.55 16 3 C 0.12 1.88 5.41 -4.04 -0.02 1.86 16 4 C -0.14 -2.53 5.65 -26.73 -0.15 -2.68 16 5 C 0.16 3.44 6.26 -4.04 -0.03 3.42 16 6 N -0.73 -20.06 5.60 -59.91 -0.34 -20.40 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 10 N -0.93 -29.52 13.06 55.49 0.72 -28.80 16 11 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 15 C 0.55 8.03 5.25 -10.99 -0.06 7.97 16 16 O -0.53 -10.11 16.45 5.55 0.09 -10.01 16 17 C -0.15 -1.58 0.80 -155.66 -0.12 -1.71 16 18 C -0.04 -0.32 4.70 -27.89 -0.13 -0.45 16 19 C -0.11 -1.13 4.98 -104.55 -0.52 -1.65 16 20 C -0.08 -0.68 9.69 -39.59 -0.38 -1.06 16 21 C -0.13 -0.99 10.04 -39.58 -0.40 -1.39 16 22 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 23 C -0.15 -1.54 10.03 -39.52 -0.40 -1.94 16 24 C 0.11 1.26 6.80 -39.42 -0.27 0.99 16 25 F -0.13 -1.70 15.34 2.25 0.03 -1.67 16 26 C -0.14 -1.34 9.79 -26.69 -0.26 -1.60 16 27 C -0.16 -1.30 9.56 -26.69 -0.26 -1.56 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.54 4.57 -51.93 -0.24 0.31 16 30 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.08 1.36 7.50 -51.93 -0.39 0.97 16 32 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 10.99 7.67 -40.82 -0.31 10.67 16 38 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.09 0.70 5.55 -51.93 -0.29 0.41 16 40 H 0.09 0.50 8.01 -51.93 -0.42 0.08 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.10 1.21 8.07 -51.92 -0.42 0.80 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -36.46 399.03 -9.51 -45.98 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.50 Total: 6.60 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -3.04 Total: -7.40 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.09 Total: -57.74 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.46 -9.51 -45.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699540126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.650 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds