Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99978 * 2 1 4 4 C 1.52994 * 109.47472 * 269.99994 * 3 2 1 5 5 C 1.52999 * 109.47243 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46805 * 180.02562 * 5 4 3 7 7 C 1.36933 * 119.99608 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00441 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99812 * 179.97438 * 7 6 5 10 10 N 1.31610 * 120.00092 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99814 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47381 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47059 * 120.00283 * 11 9 7 14 14 H 1.48503 * 109.47087 * 240.00060 * 11 9 7 15 15 C 1.34772 * 120.00031 * 180.02562 * 2 1 3 16 16 O 1.21287 * 120.00428 * 174.63280 * 15 2 1 17 17 C 1.50700 * 120.00147 * 354.62276 * 15 2 1 18 18 C 1.52996 * 115.55099 * 290.13606 * 17 15 2 19 19 C 1.50699 * 109.46963 * 294.48348 * 18 17 15 20 20 C 1.38223 * 120.01219 * 266.54119 * 19 18 17 21 21 C 1.38228 * 120.02143 * 179.72268 * 20 19 18 22 22 C 1.38261 * 120.05112 * 0.55240 * 21 20 19 23 23 C 1.38175 * 120.02844 * 359.72308 * 22 21 20 24 24 C 1.38437 * 120.01316 * 86.81633 * 19 18 17 25 25 F 1.35097 * 120.02132 * 0.02562 * 24 19 18 26 26 C 1.53000 * 117.50086 * 144.45622 * 17 15 2 27 27 C 1.53006 * 117.49429 * 75.79784 * 17 15 2 28 28 H 1.09000 * 109.47076 * 93.85590 * 1 2 3 29 29 H 1.08994 * 109.47133 * 213.85464 * 1 2 3 30 30 H 1.09005 * 109.46718 * 333.85647 * 1 2 3 31 31 H 1.09002 * 109.46833 * 149.99982 * 3 2 1 32 32 H 1.09001 * 109.46980 * 30.00599 * 3 2 1 33 33 H 1.09009 * 109.47269 * 300.00456 * 4 3 2 34 34 H 1.09000 * 109.47055 * 59.99612 * 4 3 2 35 35 H 1.08998 * 109.46854 * 299.99689 * 5 4 3 36 36 H 1.08991 * 109.47132 * 60.00453 * 5 4 3 37 37 H 0.96999 * 119.99930 * 359.97438 * 6 5 4 38 38 H 0.97007 * 120.00155 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.47655 * 54.48866 * 18 17 15 40 40 H 1.09005 * 109.46925 * 174.48924 * 18 17 15 41 41 H 1.07998 * 119.99115 * 359.97438 * 20 19 18 42 42 H 1.07997 * 119.97151 * 180.27687 * 21 20 19 43 43 H 1.08007 * 119.98948 * 179.74457 * 22 21 20 44 44 H 1.08003 * 120.01174 * 180.02562 * 23 22 21 45 45 H 1.09008 * 117.49294 * 0.02562 * 26 17 15 46 46 H 1.08998 * 117.49841 * 145.02127 * 26 17 15 47 47 H 1.08992 * 117.49825 * 214.97949 * 27 17 15 48 48 H 1.08998 * 117.49578 * 359.97438 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7105 -1.4424 5 6 3.2181 3.0352 -1.4423 6 7 3.4618 3.4584 -2.8236 7 6 4.1357 4.6239 -3.0738 8 1 4.4873 5.2313 -2.2529 9 6 4.3670 5.0246 -4.3825 10 7 3.9391 4.2842 -5.3829 11 14 5.2858 6.6149 -4.7238 12 1 5.6580 7.2574 -3.4377 13 1 6.5151 6.3190 -5.5027 14 1 4.4154 7.5322 -5.5023 15 6 2.1389 -1.1672 -0.0005 16 8 3.3478 -1.1695 -0.0988 17 6 1.3904 -2.4695 0.1212 18 6 0.7572 -2.7415 1.4872 19 6 1.8422 -2.9045 2.5202 20 6 2.3220 -4.1641 2.8262 21 6 3.3212 -4.3133 3.7696 22 6 3.8338 -3.2041 4.4165 23 6 3.3518 -1.9444 4.1164 24 6 2.3547 -1.7932 3.1674 25 9 1.8822 -0.5621 2.8735 26 6 1.9297 -3.6699 -0.6592 27 6 0.6450 -2.9741 -1.1161 28 1 -0.3633 -0.0691 -1.0253 29 1 -0.3633 -0.8534 0.5725 30 1 -0.3633 0.9226 0.4528 31 1 3.1500 1.1384 0.5139 32 1 1.6085 2.0284 0.5139 33 1 3.0417 0.9508 -1.9563 34 1 1.5002 1.8408 -1.9563 35 1 2.6294 3.7950 -0.9284 36 1 4.1705 2.9044 -0.9287 37 1 3.1463 2.9127 -3.5609 38 1 4.1004 4.5645 -6.2975 39 1 0.1152 -1.9049 1.7633 40 1 0.1633 -3.6541 1.4370 41 1 1.9189 -5.0317 2.3250 42 1 3.6986 -5.2975 4.0047 43 1 4.6117 -3.3223 5.1564 44 1 3.7527 -1.0781 4.6216 45 1 2.8262 -3.5177 -1.2603 46 1 1.8332 -4.6535 -0.1996 47 1 -0.2961 -3.5003 -0.9568 48 1 0.6957 -2.3639 -2.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699540126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = -39.218912 kcal Electronic energy + Delta-G solvation = -29166.783392 eV Core-core repulsion = 25136.427699 eV Total energy + Delta-G solvation = -4030.355693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.85698 -41.50254 -39.86119 -38.09305 -37.34606 -36.40958 -34.05821 -33.35917 -31.67036 -31.40617 -28.48653 -27.87292 -27.13232 -25.19131 -23.72520 -23.43463 -23.37249 -22.63752 -22.09038 -19.69038 -19.19653 -18.55679 -17.80993 -17.54359 -17.20657 -16.84554 -16.62620 -16.59502 -16.20242 -16.00988 -15.53339 -15.46389 -15.13733 -15.06216 -14.82268 -14.45118 -14.18380 -13.87893 -13.71061 -13.59396 -13.53503 -13.29258 -13.03465 -12.95511 -12.82268 -12.76130 -12.47244 -12.45104 -12.39349 -12.07393 -12.05357 -11.87877 -11.82757 -11.53280 -11.02217 -11.00443 -10.67981 -9.87875 -9.68459 -9.53950 -9.08052 -8.00184 -5.30895 0.22829 0.29324 1.43757 1.46107 1.56395 1.58775 1.98061 2.52585 2.59420 2.77777 3.33021 3.36368 3.46073 3.62854 3.72544 3.81154 3.83624 3.93464 3.96902 4.07136 4.18737 4.21057 4.32623 4.37350 4.42984 4.48372 4.52871 4.63412 4.64936 4.69957 4.74482 4.75735 4.82088 4.87640 4.92955 4.98703 5.08564 5.15985 5.21399 5.23285 5.23599 5.27019 5.42297 5.43504 5.49453 5.55329 6.00451 6.21675 6.42214 7.19293 7.26994 8.00697 8.25646 9.24042 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002481 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.680874 B =11283.814718 C =11910.481060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.132 3.868 4 C -0.118 4.118 5 C 0.156 3.844 6 N -0.749 5.749 7 C -0.250 4.250 8 H 0.077 0.923 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.265 1.265 13 H -0.292 1.292 14 H -0.288 1.288 15 C 0.541 3.459 16 O -0.588 6.588 17 C -0.161 4.161 18 C -0.033 4.033 19 C -0.126 4.126 20 C -0.086 4.086 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.175 4.175 24 C 0.071 3.929 25 F -0.149 7.149 26 C -0.148 4.148 27 C -0.136 4.136 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.010 0.990 37 H 0.372 0.628 38 H 0.253 0.747 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.145 0.855 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -23.697 21.695 34.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.008 3.992 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.391 5.391 7 C -0.382 4.382 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.622 5.622 11 Si 0.808 3.192 12 H -0.189 1.189 13 H -0.219 1.219 14 H -0.214 1.214 15 C 0.330 3.670 16 O -0.468 6.468 17 C -0.164 4.164 18 C -0.070 4.070 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.194 4.194 24 C 0.052 3.948 25 F -0.128 7.128 26 C -0.185 4.185 27 C -0.173 4.173 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.028 0.972 37 H 0.203 0.797 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.170 0.830 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.152 0.848 47 H 0.163 0.837 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.900 -23.463 21.720 34.116 hybrid contribution 0.904 1.490 -0.915 1.969 sum -10.996 -21.973 20.805 32.196 Atomic orbital electron populations 1.22197 0.77109 1.04941 1.03012 1.47807 1.08473 1.04972 1.72269 1.21241 0.97323 0.85314 0.95289 1.21829 1.00003 0.96025 0.97821 1.20674 0.96253 0.94014 0.86111 1.42604 1.68210 1.25500 1.02805 1.19716 1.27381 0.98793 0.92271 0.90531 1.25687 1.03170 1.02857 0.95342 1.69842 1.53211 1.40849 0.98346 0.84976 0.77471 0.78759 0.77948 1.18921 1.21914 1.21434 1.20231 0.86744 0.85516 0.74489 1.90682 1.16786 1.87877 1.51471 1.21302 1.06274 0.92707 0.96122 1.20200 0.94348 1.05330 0.87116 1.20080 1.00785 0.92849 0.99006 1.21320 0.96070 0.96137 0.96842 1.21611 0.96767 1.00100 0.96418 1.21348 0.99489 0.91124 0.99804 1.21393 0.98089 1.00355 0.99594 1.18040 0.97670 0.79994 0.99065 1.91463 1.87417 1.41347 1.92582 1.23076 0.97705 0.96208 1.01517 1.23281 0.97753 1.01764 0.94463 0.91803 0.88710 0.89592 0.92574 0.87981 0.94736 0.91306 0.94814 0.97175 0.79651 0.93833 0.89468 0.85477 0.82076 0.82466 0.83026 0.85048 0.91114 0.84775 0.83691 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.98 127.77 1.28 2.46 16 2 N -0.60 -16.20 2.64 -846.75 -2.24 -18.44 16 3 C 0.13 4.13 5.41 86.38 0.47 4.60 16 4 C -0.12 -4.46 5.65 30.59 0.17 -4.29 16 5 C 0.16 7.03 6.26 86.38 0.54 7.57 16 6 N -0.75 -41.98 5.60 -343.46 -1.92 -43.90 16 7 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 10 N -0.97 -62.46 13.06 21.65 0.28 -62.17 16 11 Si 0.98 48.11 29.55 68.60 2.03 50.13 16 12 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 C 0.54 16.19 5.25 87.66 0.46 16.65 16 16 O -0.59 -24.04 16.45 -3.05 -0.05 -24.09 16 17 C -0.16 -3.08 0.80 -52.93 -0.04 -3.12 16 18 C -0.03 -0.46 4.70 29.85 0.14 -0.32 16 19 C -0.13 -2.30 4.98 -19.82 -0.10 -2.40 16 20 C -0.09 -1.14 9.69 22.26 0.22 -0.93 16 21 C -0.13 -1.67 10.04 22.27 0.22 -1.45 16 22 C -0.10 -1.55 10.04 22.26 0.22 -1.33 16 23 C -0.18 -3.69 10.03 22.31 0.22 -3.47 16 24 C 0.07 1.68 6.80 22.37 0.15 1.84 16 25 F -0.15 -4.02 15.34 44.97 0.69 -3.33 16 26 C -0.15 -2.56 9.79 30.62 0.30 -2.26 16 27 C -0.14 -1.89 9.56 30.62 0.29 -1.59 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.20 4.57 -2.39 -0.01 1.19 16 30 H 0.09 1.27 7.85 -2.38 -0.02 1.25 16 31 H 0.06 2.03 7.50 -2.39 -0.02 2.02 16 32 H 0.10 2.63 7.87 -2.39 -0.02 2.61 16 33 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.37 22.11 7.67 -92.71 -0.71 21.39 16 38 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.09 1.18 5.55 -2.38 -0.01 1.17 16 40 H 0.13 0.77 8.01 -2.38 -0.02 0.75 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.07 1.71 8.07 -2.38 -0.02 1.69 16 46 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 47 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -83.54 399.03 4.89 -78.65 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.25 Total: 29.63 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.85 Total: -6.48 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -3.88 Total: -124.51 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.69 Total: -3.33 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Total: -83.54 4.89 -78.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699540126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.428 kcal (2) G-P(sol) polarization free energy of solvation -83.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds