Wall clock time and date at job start Tue Mar 31 2020 18:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 C 1.53000 * 109.46884 * 239.99745 * 2 1 3 5 5 C 1.50699 * 109.47213 * 65.00372 * 4 2 1 6 6 C 1.38266 * 119.98580 * 269.72761 * 5 4 2 7 7 C 1.38222 * 120.05143 * 179.72611 * 6 5 4 8 8 C 1.38223 * 120.02446 * 0.54050 * 7 6 5 9 9 C 1.38433 * 119.97466 * 359.73129 * 8 7 6 10 10 F 1.35098 * 120.02581 * 180.02562 * 9 8 7 11 11 C 1.38174 * 119.99043 * 89.99019 * 5 4 2 12 12 C 1.50700 * 109.46987 * 120.00189 * 2 1 3 13 13 O 1.21284 * 120.00269 * 120.00124 * 12 2 1 14 14 N 1.34783 * 119.99747 * 299.99830 * 12 2 1 15 15 C 1.46498 * 119.99720 * 180.02562 * 14 12 2 16 16 H 1.09006 * 112.85248 * 23.80619 * 15 14 12 17 17 C 1.53778 * 113.61444 * 154.99832 * 15 14 12 18 18 C 1.53787 * 87.08069 * 89.19909 * 17 15 14 19 19 H 1.08990 * 113.61394 * 270.80166 * 18 17 15 20 20 C 1.53000 * 113.61270 * 139.97924 * 18 17 15 21 21 N 1.46499 * 109.46840 * 176.52995 * 20 18 17 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47261 * 59.99582 * 26 24 22 28 28 H 1.48502 * 109.47375 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46897 * 300.00142 * 26 24 22 30 30 C 1.53783 * 87.17078 * 25.39268 * 18 17 15 31 31 H 1.08998 * 109.47610 * 299.99709 * 1 2 3 32 32 H 1.08998 * 109.47262 * 60.00261 * 1 2 3 33 33 H 1.09010 * 109.46750 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46899 * 185.00116 * 4 2 1 35 35 H 1.08994 * 109.47673 * 304.99640 * 4 2 1 36 36 H 1.07998 * 119.97681 * 359.96984 * 6 5 4 37 37 H 1.07998 * 119.98887 * 180.26955 * 7 6 5 38 38 H 1.08001 * 120.01068 * 179.70753 * 8 7 6 39 39 H 1.08000 * 120.01189 * 359.97438 * 11 5 4 40 40 H 0.96997 * 120.00030 * 0.02562 * 14 12 2 41 41 H 1.09000 * 113.61215 * 334.65498 * 17 15 14 42 42 H 1.09002 * 113.61764 * 203.74678 * 17 15 14 43 43 H 1.09002 * 109.47398 * 296.53321 * 20 18 17 44 44 H 1.09001 * 109.47194 * 56.53501 * 20 18 17 45 45 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 46 46 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 47 47 H 1.09003 * 113.61584 * 89.15627 * 30 18 17 48 48 H 1.09000 * 113.61286 * 220.05881 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4378 -0.2092 -3.1029 7 6 0.0682 0.5077 -4.2254 8 6 0.9068 1.4840 -4.7296 9 6 2.1147 1.7475 -4.1067 10 9 2.9348 2.7018 -4.5983 11 6 2.4812 1.0325 -2.9788 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 3.1011 -1.5181 3.4657 17 6 2.2849 -0.0354 4.8909 18 6 0.8309 -0.4363 5.1911 19 1 0.0929 0.2156 4.7238 20 6 0.5557 -0.6763 6.6769 21 7 -0.8667 -0.9700 6.8688 22 6 -1.3507 -1.2200 8.1251 23 1 -0.6840 -1.2002 8.9746 24 6 -2.6984 -1.4988 8.3070 25 7 -3.5110 -1.5224 7.2719 26 14 -3.3589 -1.8392 10.0208 27 1 -3.1166 -0.6584 10.8882 28 1 -4.8177 -2.1062 9.9452 29 1 -2.6674 -3.0228 10.5917 30 6 1.1032 -1.7259 4.3990 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 3.1263 -0.7996 -1.2056 35 1 1.6055 -1.7198 -1.2951 36 1 -0.2159 -0.9751 -2.7125 37 1 -0.8741 0.3020 -4.7113 38 1 0.6200 2.0408 -5.6095 39 1 3.4230 1.2376 -2.4916 40 1 1.1488 0.5385 2.5436 41 1 2.4061 1.0213 4.6525 42 1 2.9976 -0.3865 5.6371 43 1 1.1512 -1.5202 7.0251 44 1 0.8223 0.2153 7.2445 45 1 -1.4656 -0.9874 6.1060 46 1 -4.4528 -1.7169 7.3989 47 1 1.4922 -2.5401 5.0104 48 1 0.2717 -2.0321 3.7640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700646113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:57 Heat of formation + Delta-G solvation = -42.689002 kcal Electronic energy + Delta-G solvation = -27497.106723 eV Core-core repulsion = 23466.600556 eV Total energy + Delta-G solvation = -4030.506168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.24272 -40.54806 -39.60195 -38.41610 -35.19494 -34.55270 -33.18080 -31.49982 -30.89272 -30.55070 -27.22067 -26.85794 -25.50704 -24.48139 -23.29283 -22.95252 -21.85310 -21.37223 -20.11388 -19.08330 -17.84692 -17.15388 -16.97525 -16.71199 -16.53892 -16.07718 -15.90072 -15.46299 -14.97632 -14.68583 -14.41969 -14.34344 -13.91430 -13.84609 -13.72792 -13.40982 -13.19028 -13.07947 -12.72733 -12.54947 -12.41116 -12.33202 -12.13152 -12.03592 -11.65267 -11.49358 -11.40189 -11.28827 -11.03309 -10.81604 -10.48405 -10.36063 -10.11167 -9.87988 -9.82186 -9.60556 -9.34535 -9.03996 -9.01007 -8.83858 -6.90127 -5.75755 -3.03873 0.74388 0.79221 2.51886 2.98417 3.21821 3.44246 3.48448 3.49559 3.83883 4.22691 4.34751 4.46862 4.57519 4.58568 4.65399 4.67720 4.74080 4.81809 4.84326 4.95018 5.06944 5.11173 5.14225 5.32574 5.38954 5.45516 5.53223 5.58284 5.66403 5.70798 5.73894 5.82738 5.85676 5.88491 5.91454 5.93547 6.01730 6.10807 6.13994 6.23912 6.31446 6.42415 6.49391 6.63372 6.78446 6.93856 7.42733 7.70008 8.13132 8.43576 9.54432 10.13648 10.48118 11.47168 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.001821 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.526584 B =15371.743239 C =16161.265974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.098 0.902 4 C -0.064 4.064 5 C -0.048 4.048 6 C -0.124 4.124 7 C -0.089 4.089 8 C -0.160 4.160 9 C 0.099 3.901 10 F -0.141 7.141 11 C -0.152 4.152 12 C 0.520 3.480 13 O -0.542 6.542 14 N -0.707 5.707 15 C 0.115 3.885 16 H 0.098 0.902 17 C -0.138 4.138 18 C -0.113 4.113 19 H 0.087 0.913 20 C 0.162 3.838 21 N -0.731 5.731 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.138 4.138 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.401 0.599 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.361 6.594 -24.375 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.102 4.102 5 C -0.048 4.048 6 C -0.143 4.143 7 C -0.107 4.107 8 C -0.179 4.179 9 C 0.080 3.920 10 F -0.120 7.120 11 C -0.170 4.170 12 C 0.306 3.694 13 O -0.418 6.418 14 N -0.358 5.358 15 C 0.009 3.991 16 H 0.116 0.884 17 C -0.177 4.177 18 C -0.131 4.131 19 H 0.105 0.895 20 C 0.034 3.966 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.176 4.176 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.236 0.764 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.888 5.890 -24.285 27.673 hybrid contribution -0.848 0.454 0.700 1.190 sum 11.040 6.344 -23.585 26.802 Atomic orbital electron populations 1.21903 0.92402 1.03263 1.03192 1.21269 0.98106 1.00800 0.92407 0.88353 1.20454 1.02546 0.98263 0.88909 1.19742 0.93741 0.95125 0.96221 1.21221 0.96458 1.00601 0.95982 1.21040 0.99272 0.94586 0.95772 1.21161 0.93896 1.00901 1.01923 1.17712 0.89759 0.89550 0.95028 1.91505 1.71611 1.61687 1.87190 1.21074 1.01713 0.97738 0.96505 1.20549 0.79807 0.84480 0.84563 1.90702 1.38092 1.26245 1.86799 1.45702 1.53185 1.31737 1.05142 1.21985 0.98248 0.95071 0.83752 0.88355 1.23309 0.98311 0.99405 0.96665 1.22746 0.95495 0.97189 0.97715 0.89505 1.20639 0.87531 0.97000 0.91393 1.42328 1.03106 1.85041 1.07062 1.19203 0.92249 1.39711 0.85865 0.91299 1.24739 0.96250 1.02871 0.97259 1.69645 1.03991 1.56179 1.28526 0.86262 0.77804 0.78087 0.84006 1.21310 1.21705 1.21289 1.23425 0.98379 0.97458 0.98361 0.91686 0.91021 0.91646 0.89673 0.89572 0.85045 0.84912 0.84893 0.84725 0.76390 0.91310 0.88753 0.96234 0.96446 0.78351 0.93518 0.89177 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.67 37.16 0.32 -0.77 16 2 C -0.10 -0.84 2.71 -91.77 -0.25 -1.09 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.06 -0.52 4.19 -27.88 -0.12 -0.63 16 5 C -0.05 -0.36 4.70 -104.64 -0.49 -0.85 16 6 C -0.12 -0.82 7.98 -39.58 -0.32 -1.14 16 7 C -0.09 -0.54 10.04 -39.59 -0.40 -0.94 16 8 C -0.16 -1.11 10.03 -39.51 -0.40 -1.51 16 9 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 10 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 11 C -0.15 -1.19 9.68 -39.51 -0.38 -1.57 16 12 C 0.52 5.89 7.15 -10.98 -0.08 5.81 16 13 O -0.54 -8.14 15.52 5.55 0.09 -8.06 16 14 N -0.71 -7.53 5.16 -52.93 -0.27 -7.80 16 15 C 0.11 1.41 4.33 -67.03 -0.29 1.12 16 16 H 0.10 1.29 7.47 -51.93 -0.39 0.91 16 17 C -0.14 -1.63 7.39 -25.92 -0.19 -1.82 16 18 C -0.11 -1.70 3.63 -89.80 -0.33 -2.03 16 19 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.16 3.19 6.08 -4.04 -0.02 3.16 16 21 N -0.73 -18.47 5.60 -59.91 -0.34 -18.81 16 22 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 C -0.14 -2.01 7.44 -25.82 -0.19 -2.20 16 31 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.07 0.46 6.28 -51.93 -0.33 0.13 16 33 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 35 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.13 0.71 8.05 -52.49 -0.42 0.28 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.40 3.50 8.12 -40.82 -0.33 3.17 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.02 0.39 7.88 -51.93 -0.41 -0.01 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.09 1.36 7.92 -51.93 -0.41 0.95 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -33.11 398.49 -10.04 -43.15 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.60 Total: 8.25 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.66 Total: -11.34 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.12 Total: -54.17 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.11 -10.04 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700646113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.459 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds