Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 C 1.53000 * 109.46884 * 239.99745 * 2 1 3 5 5 C 1.50699 * 109.47213 * 65.00372 * 4 2 1 6 6 C 1.38266 * 119.98580 * 269.72761 * 5 4 2 7 7 C 1.38222 * 120.05143 * 179.72611 * 6 5 4 8 8 C 1.38223 * 120.02446 * 0.54050 * 7 6 5 9 9 C 1.38433 * 119.97466 * 359.73129 * 8 7 6 10 10 F 1.35098 * 120.02581 * 180.02562 * 9 8 7 11 11 C 1.38174 * 119.99043 * 89.99019 * 5 4 2 12 12 C 1.50700 * 109.46987 * 120.00189 * 2 1 3 13 13 O 1.21284 * 120.00269 * 120.00124 * 12 2 1 14 14 N 1.34783 * 119.99747 * 299.99830 * 12 2 1 15 15 C 1.46498 * 119.99720 * 180.02562 * 14 12 2 16 16 H 1.09006 * 112.85248 * 23.80619 * 15 14 12 17 17 C 1.53778 * 113.61444 * 154.99832 * 15 14 12 18 18 C 1.53787 * 87.08069 * 89.19909 * 17 15 14 19 19 H 1.08990 * 113.61394 * 270.80166 * 18 17 15 20 20 C 1.53000 * 113.61270 * 139.97924 * 18 17 15 21 21 N 1.46499 * 109.46840 * 176.52995 * 20 18 17 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47261 * 59.99582 * 26 24 22 28 28 H 1.48502 * 109.47375 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46897 * 300.00142 * 26 24 22 30 30 C 1.53783 * 87.17078 * 25.39268 * 18 17 15 31 31 H 1.08998 * 109.47610 * 299.99709 * 1 2 3 32 32 H 1.08998 * 109.47262 * 60.00261 * 1 2 3 33 33 H 1.09010 * 109.46750 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46899 * 185.00116 * 4 2 1 35 35 H 1.08994 * 109.47673 * 304.99640 * 4 2 1 36 36 H 1.07998 * 119.97681 * 359.96984 * 6 5 4 37 37 H 1.07998 * 119.98887 * 180.26955 * 7 6 5 38 38 H 1.08001 * 120.01068 * 179.70753 * 8 7 6 39 39 H 1.08000 * 120.01189 * 359.97438 * 11 5 4 40 40 H 0.96997 * 120.00030 * 0.02562 * 14 12 2 41 41 H 1.09000 * 113.61215 * 334.65498 * 17 15 14 42 42 H 1.09002 * 113.61764 * 203.74678 * 17 15 14 43 43 H 1.09002 * 109.47398 * 296.53321 * 20 18 17 44 44 H 1.09001 * 109.47194 * 56.53501 * 20 18 17 45 45 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 46 46 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 47 47 H 1.09003 * 113.61584 * 89.15627 * 30 18 17 48 48 H 1.09000 * 113.61286 * 220.05881 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4378 -0.2092 -3.1029 7 6 0.0682 0.5077 -4.2254 8 6 0.9068 1.4840 -4.7296 9 6 2.1147 1.7475 -4.1067 10 9 2.9348 2.7018 -4.5983 11 6 2.4812 1.0325 -2.9788 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 3.1011 -1.5181 3.4657 17 6 2.2849 -0.0354 4.8909 18 6 0.8309 -0.4363 5.1911 19 1 0.0929 0.2156 4.7238 20 6 0.5557 -0.6763 6.6769 21 7 -0.8667 -0.9700 6.8688 22 6 -1.3507 -1.2200 8.1251 23 1 -0.6840 -1.2002 8.9746 24 6 -2.6984 -1.4988 8.3070 25 7 -3.5110 -1.5224 7.2719 26 14 -3.3589 -1.8392 10.0208 27 1 -3.1166 -0.6584 10.8882 28 1 -4.8177 -2.1062 9.9452 29 1 -2.6674 -3.0228 10.5917 30 6 1.1032 -1.7259 4.3990 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 3.1263 -0.7996 -1.2056 35 1 1.6055 -1.7198 -1.2951 36 1 -0.2159 -0.9751 -2.7125 37 1 -0.8741 0.3020 -4.7113 38 1 0.6200 2.0408 -5.6095 39 1 3.4230 1.2376 -2.4916 40 1 1.1488 0.5385 2.5436 41 1 2.4061 1.0213 4.6525 42 1 2.9976 -0.3865 5.6371 43 1 1.1512 -1.5202 7.0251 44 1 0.8223 0.2153 7.2445 45 1 -1.4656 -0.9874 6.1060 46 1 -4.4528 -1.7169 7.3989 47 1 1.4922 -2.5401 5.0104 48 1 0.2717 -2.0321 3.7640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700646113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -61.707399 kcal Electronic energy + Delta-G solvation = -27497.931423 eV Core-core repulsion = 23466.600556 eV Total energy + Delta-G solvation = -4031.330867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.88817 -41.46447 -40.30260 -39.42783 -36.34503 -35.89028 -34.39916 -32.82752 -31.95205 -31.23548 -28.51133 -27.78474 -26.61665 -25.62132 -24.68806 -23.57696 -22.95534 -22.39639 -20.90821 -20.28328 -19.06084 -18.51403 -17.83998 -17.29184 -17.07534 -17.06477 -16.69070 -16.57552 -16.30133 -15.91150 -15.72686 -15.20299 -15.03082 -14.92978 -14.79380 -14.37478 -14.36276 -13.90632 -13.76564 -13.61607 -13.34687 -13.14450 -13.09963 -13.00764 -12.87411 -12.66309 -12.57448 -12.23011 -12.10842 -12.03271 -11.91941 -11.87009 -11.72191 -11.33970 -11.13106 -10.85310 -10.77291 -10.00449 -9.89410 -9.60038 -8.97079 -7.94419 -5.22518 0.19175 0.26423 1.47173 1.50166 1.56268 1.61565 2.15361 2.56583 2.64740 3.26244 3.38264 3.56220 3.60511 3.63086 3.81034 3.82678 3.94724 3.96327 4.03117 4.05568 4.20118 4.30416 4.35063 4.39038 4.45554 4.58863 4.72630 4.78539 4.82023 4.86114 4.86648 4.92510 4.93343 4.99494 5.00884 5.13904 5.16081 5.17098 5.21577 5.28394 5.30505 5.39061 5.40426 5.49828 5.58998 5.70502 5.96603 6.28372 6.56344 7.25237 7.34362 8.12499 8.35047 9.28887 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.001821 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.526584 B =15371.743239 C =16161.265974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.117 0.883 4 C -0.059 4.059 5 C -0.052 4.052 6 C -0.126 4.126 7 C -0.086 4.086 8 C -0.162 4.162 9 C 0.077 3.923 10 F -0.152 7.152 11 C -0.158 4.158 12 C 0.518 3.482 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.126 3.874 16 H 0.093 0.907 17 C -0.117 4.117 18 C -0.110 4.110 19 H 0.087 0.913 20 C 0.159 3.841 21 N -0.744 5.744 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.973 3.027 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.279 1.279 30 C -0.142 4.142 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.413 0.587 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.081 0.919 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 7.559 -24.647 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.135 0.865 4 C -0.096 4.096 5 C -0.052 4.052 6 C -0.144 4.144 7 C -0.104 4.104 8 C -0.180 4.180 9 C 0.058 3.942 10 F -0.131 7.131 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.461 6.461 14 N -0.351 5.351 15 C 0.020 3.980 16 H 0.111 0.889 17 C -0.156 4.156 18 C -0.128 4.128 19 H 0.105 0.895 20 C 0.033 3.967 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.802 3.198 27 H -0.203 1.203 28 H -0.221 1.221 29 H -0.205 1.205 30 C -0.181 4.181 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.250 0.750 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.032 6.888 -24.547 28.191 hybrid contribution -0.846 0.128 0.764 1.147 sum 11.185 7.016 -23.783 27.202 Atomic orbital electron populations 1.21898 0.91563 1.02975 1.04036 1.21253 0.98570 1.01188 0.90594 0.86471 1.20354 1.01854 0.98052 0.89374 1.19661 0.94222 0.95159 0.96149 1.21442 0.96198 1.00711 0.96010 1.21338 0.99969 0.93734 0.95375 1.21419 0.93359 1.01037 1.02215 1.17958 0.90465 0.90011 0.95762 1.91473 1.72063 1.62199 1.87390 1.21154 1.02033 0.97922 0.96609 1.21135 0.78933 0.83938 0.85418 1.90686 1.39965 1.28119 1.87359 1.45665 1.53021 1.31828 1.04607 1.21776 0.96927 0.94853 0.84462 0.88939 1.23221 0.95617 1.00695 0.96052 1.22668 0.97880 0.97765 0.94525 0.89494 1.20831 0.84529 0.96716 0.94652 1.42553 1.05220 1.85014 1.05874 1.19625 0.92596 1.38495 0.87173 0.90807 1.25572 0.96708 1.03650 1.01022 1.69802 1.03913 1.57750 1.30518 0.85213 0.76672 0.78207 0.79680 1.20323 1.22111 1.20536 1.23424 0.98789 0.97348 0.98526 0.91299 0.89713 0.92510 0.90682 0.90330 0.83792 0.82405 0.83453 0.84443 0.75007 0.88985 0.87806 0.96344 0.96133 0.79504 0.94026 0.90014 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.67 71.98 0.62 -1.29 16 2 C -0.09 -1.40 2.71 -11.54 -0.03 -1.43 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.06 -0.91 4.19 29.85 0.12 -0.78 16 5 C -0.05 -0.71 4.70 -19.87 -0.09 -0.80 16 6 C -0.13 -1.42 7.98 22.27 0.18 -1.24 16 7 C -0.09 -0.85 10.04 22.26 0.22 -0.63 16 8 C -0.16 -1.99 10.03 22.31 0.22 -1.77 16 9 C 0.08 1.23 7.30 22.37 0.16 1.40 16 10 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 11 C -0.16 -2.38 9.68 22.31 0.22 -2.16 16 12 C 0.52 11.30 7.15 87.66 0.63 11.93 16 13 O -0.58 -17.48 15.52 -3.04 -0.05 -17.53 16 14 N -0.70 -13.91 5.16 -439.74 -2.27 -16.18 16 15 C 0.13 2.93 4.33 45.58 0.20 3.13 16 16 H 0.09 2.35 7.47 -2.38 -0.02 2.33 16 17 C -0.12 -2.48 7.39 31.12 0.23 -2.25 16 18 C -0.11 -3.19 3.63 -10.26 -0.04 -3.23 16 19 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 20 C 0.16 6.15 6.08 86.38 0.53 6.68 16 21 N -0.74 -37.72 5.60 -343.45 -1.92 -39.64 16 22 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 25 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 26 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 C -0.14 -4.12 7.44 31.18 0.23 -3.89 16 31 H 0.07 0.85 7.56 -2.39 -0.02 0.83 16 32 H 0.08 0.90 6.28 -2.39 -0.01 0.88 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16 35 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.14 1.24 8.05 -2.91 -0.02 1.22 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.41 6.34 8.12 -92.71 -0.75 5.58 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.02 0.73 7.88 -2.39 -0.02 0.71 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.37 20.08 7.67 -92.71 -0.71 19.36 16 46 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 47 H 0.08 2.49 7.92 -2.39 -0.02 2.47 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.41 398.49 3.06 -68.34 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.49 Total: 31.26 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.71 Total: -13.38 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.91 Total: -114.85 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -71.41 3.06 -68.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700646113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.637 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds