Wall clock time and date at job start Tue Mar 31 2020 17:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47267 * 2 1 4 4 C 1.53001 * 109.47073 * 239.99827 * 2 1 3 5 5 N 1.46498 * 109.47356 * 185.00244 * 4 2 1 6 6 C 1.46503 * 120.00031 * 270.00070 * 5 4 2 7 7 C 1.34775 * 120.00424 * 89.99847 * 5 4 2 8 8 O 1.21287 * 119.99905 * 5.12150 * 7 5 4 9 9 C 1.50704 * 120.00231 * 185.12460 * 7 5 4 10 10 C 1.50694 * 112.84748 * 295.02839 * 9 7 5 11 11 C 1.38215 * 120.01397 * 114.48915 * 10 9 7 12 12 C 1.38219 * 120.02774 * 180.27231 * 11 10 9 13 13 C 1.38269 * 120.05255 * 0.02562 * 12 11 10 14 14 C 1.38177 * 120.02610 * 359.97438 * 13 12 11 15 15 C 1.38444 * 120.01173 * 294.76408 * 10 9 7 16 16 F 1.35099 * 120.02684 * 359.74527 * 15 10 9 17 17 C 1.53780 * 113.68810 * 66.29596 * 9 7 5 18 18 C 1.53782 * 87.08265 * 89.12909 * 17 9 7 19 19 C 1.53778 * 113.61151 * 163.83164 * 9 7 5 20 20 N 1.46501 * 109.47031 * 120.00027 * 2 1 3 21 21 C 1.36936 * 120.00020 * 274.99834 * 20 2 1 22 22 H 1.08001 * 120.00130 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00347 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99486 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46940 * 60.00164 * 25 23 21 27 27 H 1.48500 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47047 * 299.99648 * 25 23 21 29 29 H 1.09004 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47025 * 299.99770 * 1 2 3 31 31 H 1.08994 * 109.46877 * 60.00232 * 1 2 3 32 32 H 1.08996 * 109.47314 * 64.99749 * 4 2 1 33 33 H 1.09002 * 109.47113 * 305.00154 * 4 2 1 34 34 H 1.08998 * 109.47079 * 267.94668 * 6 5 4 35 35 H 1.09008 * 109.46686 * 27.94351 * 6 5 4 36 36 H 1.09000 * 109.47372 * 147.94153 * 6 5 4 37 37 H 1.08000 * 119.98693 * 0.26897 * 11 10 9 38 38 H 1.07999 * 119.97834 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99206 * 180.02562 * 13 12 11 40 40 H 1.07993 * 120.01411 * 180.02562 * 14 13 12 41 41 H 1.09005 * 113.60692 * 203.67634 * 17 9 7 42 42 H 1.09000 * 113.61584 * 334.57694 * 17 9 7 43 43 H 1.08999 * 113.61001 * 270.88268 * 18 17 9 44 44 H 1.08999 * 113.61500 * 139.98008 * 18 17 9 45 45 H 1.08996 * 113.61986 * 25.34847 * 19 9 7 46 46 H 1.09006 * 113.60964 * 156.25164 * 19 9 7 47 47 H 0.97006 * 120.00277 * 94.99958 * 20 2 1 48 48 H 0.96997 * 119.99860 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3344 0.2339 -1.7613 7 6 4.0758 -1.8988 -0.6116 8 8 3.3890 -2.8196 -0.2224 9 6 5.5728 -1.9536 -0.4476 10 6 6.3043 -2.0000 -1.7643 11 6 7.1148 -0.9462 -2.1425 12 6 7.7814 -0.9860 -3.3526 13 6 7.6381 -2.0796 -4.1865 14 6 6.8284 -3.1343 -3.8106 15 6 6.1604 -3.0957 -2.5982 16 9 5.3681 -4.1262 -2.2298 17 6 6.1264 -0.9016 0.5279 18 6 5.9131 -1.9383 1.6435 19 6 6.0439 -3.0185 0.5568 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3757 22 1 1.8927 1.0405 2.4242 23 6 2.6123 -0.6617 3.5091 24 7 2.9253 -1.9388 3.4499 25 14 2.7914 0.2704 5.1179 26 1 1.4692 0.8072 5.5288 27 1 3.3002 -0.6480 6.1681 28 1 3.7466 1.3928 4.9361 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1585 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 4.5727 -0.0090 -2.7968 35 1 3.7944 1.1801 -1.7251 36 1 5.2566 0.3196 -1.1866 37 1 7.2272 -0.0913 -1.4922 38 1 8.4142 -0.1620 -3.6475 39 1 8.1597 -2.1099 -5.1317 40 1 6.7169 -3.9885 -4.4619 41 1 7.1741 -0.6550 0.3555 42 1 5.4933 -0.0197 0.6245 43 1 4.9233 -1.8935 2.0977 44 1 6.7170 -1.9596 2.3793 45 1 5.3441 -3.8455 0.6767 46 1 7.0690 -3.3506 0.3923 47 1 2.2490 -1.6318 1.1527 48 1 3.2493 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700801112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:46 Heat of formation + Delta-G solvation = -8.204738 kcal Electronic energy + Delta-G solvation = -31501.382504 eV Core-core repulsion = 27472.371686 eV Total energy + Delta-G solvation = -4029.010818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.70051 -40.77003 -38.67061 -37.17149 -35.65505 -34.29659 -31.91289 -31.29686 -30.57531 -28.65353 -27.08462 -26.53080 -25.41806 -24.62421 -23.53345 -22.55375 -21.90605 -20.58757 -19.53932 -18.11417 -17.74012 -17.08835 -16.55919 -16.22751 -15.78323 -15.43268 -15.33531 -15.02975 -14.74006 -14.29937 -14.12952 -13.95547 -13.67864 -13.17255 -13.02351 -12.78483 -12.53439 -12.35224 -12.17741 -12.08053 -12.03724 -11.94290 -11.75999 -11.46880 -11.38565 -11.23624 -11.08694 -10.78628 -10.62434 -10.33407 -10.21405 -10.09597 -10.00908 -9.80880 -9.51325 -9.31449 -8.91378 -8.79710 -8.51302 -7.99280 -6.79090 -5.60420 -2.90169 1.08641 1.11275 3.25060 3.44594 3.47533 3.52992 3.53945 3.58114 4.27313 4.57413 4.63573 4.67449 4.83318 4.93386 4.96552 5.06957 5.18835 5.29684 5.41335 5.45677 5.50248 5.59022 5.65207 5.71300 5.85957 5.89268 5.93130 5.95691 6.02493 6.07332 6.08970 6.14506 6.20861 6.25450 6.31395 6.33029 6.44911 6.50281 6.65525 6.70649 6.72722 6.81926 6.86336 7.02854 7.21527 7.40773 7.78854 7.95556 8.56230 8.88104 9.68177 10.30099 10.69183 11.59039 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.004718 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.344028 B = 5933.436649 C = 6635.799012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.043 0.957 4 C 0.109 3.891 5 N -0.604 5.604 6 C 0.077 3.923 7 C 0.558 3.442 8 O -0.509 6.509 9 C -0.063 4.063 10 C -0.091 4.091 11 C -0.088 4.088 12 C -0.132 4.132 13 C -0.098 4.098 14 C -0.157 4.157 15 C 0.108 3.892 16 F -0.128 7.128 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.111 4.111 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.063 0.937 23 C -0.009 4.009 24 N -0.918 5.918 25 Si 0.896 3.104 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.289 1.289 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.587 3.020 -16.383 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.061 0.939 4 C -0.014 4.014 5 N -0.337 5.337 6 C -0.066 4.066 7 C 0.345 3.655 8 O -0.382 6.382 9 C -0.066 4.066 10 C -0.092 4.092 11 C -0.106 4.106 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.176 4.176 15 C 0.088 3.912 16 F -0.106 7.106 17 C -0.162 4.162 18 C -0.184 4.184 19 C -0.148 4.148 20 N -0.365 5.365 21 C -0.367 4.367 22 H 0.081 0.919 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.727 3.273 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.154 0.846 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.235 0.765 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.195 2.556 -16.013 19.154 hybrid contribution 0.054 0.231 0.919 0.949 sum 10.249 2.786 -15.094 18.456 Atomic orbital electron populations 1.22403 0.99145 1.00974 0.99867 1.20635 0.91948 0.95515 0.87578 0.93910 1.21840 0.79359 1.02097 0.98130 1.47420 1.06426 1.21016 1.58861 1.21945 0.96151 0.90918 0.97601 1.19289 0.87917 0.81768 0.76563 1.90687 1.63610 1.36670 1.47260 1.20829 0.92579 1.02239 0.90999 1.19720 0.99590 0.94109 0.95795 1.21043 0.95428 0.97598 0.96518 1.21151 1.00567 0.98745 0.94522 1.20960 0.97832 0.93110 0.99725 1.21139 0.99616 1.00950 0.95873 1.17656 0.93226 0.85936 0.94338 1.91573 1.71300 1.56210 1.91516 1.23051 1.00164 0.97531 0.95490 1.23209 1.06191 0.93551 0.95449 1.22802 1.00429 0.97492 0.94103 1.42650 1.77631 1.11611 1.04626 1.19146 1.36295 0.93556 0.87674 0.91889 1.24660 1.02671 0.95854 0.97379 1.69660 1.50469 1.08106 1.28361 0.86454 0.77603 0.78661 0.84552 1.21639 1.21804 1.21601 0.93384 0.92665 0.94682 0.91292 0.90279 0.93631 0.91482 0.90703 0.84630 0.85399 0.85334 0.84972 0.90062 0.90053 0.84614 0.92351 0.89580 0.90802 0.76506 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.15 3.20 -67.93 -0.22 2.93 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 C 0.11 1.94 5.14 -4.04 -0.02 1.92 16 5 N -0.60 -10.67 2.77 -181.57 -0.50 -11.17 16 6 C 0.08 1.04 8.72 59.85 0.52 1.57 16 7 C 0.56 11.23 5.08 -10.98 -0.06 11.17 16 8 O -0.51 -12.44 13.55 5.55 0.08 -12.36 16 9 C -0.06 -1.07 0.20 -156.00 -0.03 -1.10 16 10 C -0.09 -1.28 3.92 -104.56 -0.41 -1.69 16 11 C -0.09 -0.96 7.34 -39.60 -0.29 -1.25 16 12 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 13 C -0.10 -0.88 10.04 -39.59 -0.40 -1.28 16 14 C -0.16 -1.76 10.03 -39.51 -0.40 -2.15 16 15 C 0.11 1.56 7.04 -39.41 -0.28 1.29 16 16 F -0.13 -2.22 16.24 2.25 0.04 -2.18 16 17 C -0.13 -2.03 5.20 -25.92 -0.13 -2.16 16 18 C -0.15 -2.86 7.81 -25.92 -0.20 -3.06 16 19 C -0.11 -2.01 6.72 -25.92 -0.17 -2.18 16 20 N -0.72 -18.32 4.52 -53.43 -0.24 -18.56 16 21 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.17 11.65 55.49 0.65 -26.53 16 25 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 34 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 35 H 0.07 0.81 8.06 -51.92 -0.42 0.40 16 36 H 0.07 0.97 3.15 -51.93 -0.16 0.80 16 37 H 0.14 1.28 5.74 -52.49 -0.30 0.98 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.08 1.06 6.77 -51.93 -0.35 0.70 16 42 H 0.08 1.44 6.91 -51.93 -0.36 1.08 16 43 H 0.14 3.34 6.68 -51.93 -0.35 3.00 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.81 7.34 -51.93 -0.38 1.42 16 46 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 47 H 0.40 11.09 5.24 -40.82 -0.21 10.88 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.65 377.31 -8.79 -41.44 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -7.09 Total: 13.64 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.38 Total: -7.25 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.10 Total: -56.26 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.65 -8.79 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700801112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.239 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds