Wall clock time and date at job start Tue Mar 31 2020 17:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47267 * 2 1 4 4 C 1.53001 * 109.47073 * 239.99827 * 2 1 3 5 5 N 1.46498 * 109.47356 * 185.00244 * 4 2 1 6 6 C 1.46503 * 120.00031 * 270.00070 * 5 4 2 7 7 C 1.34775 * 120.00424 * 89.99847 * 5 4 2 8 8 O 1.21287 * 119.99905 * 5.12150 * 7 5 4 9 9 C 1.50704 * 120.00231 * 185.12460 * 7 5 4 10 10 C 1.50694 * 112.84748 * 295.02839 * 9 7 5 11 11 C 1.38215 * 120.01397 * 114.48915 * 10 9 7 12 12 C 1.38219 * 120.02774 * 180.27231 * 11 10 9 13 13 C 1.38269 * 120.05255 * 0.02562 * 12 11 10 14 14 C 1.38177 * 120.02610 * 359.97438 * 13 12 11 15 15 C 1.38444 * 120.01173 * 294.76408 * 10 9 7 16 16 F 1.35099 * 120.02684 * 359.74527 * 15 10 9 17 17 C 1.53780 * 113.68810 * 66.29596 * 9 7 5 18 18 C 1.53782 * 87.08265 * 89.12909 * 17 9 7 19 19 C 1.53778 * 113.61151 * 163.83164 * 9 7 5 20 20 N 1.46501 * 109.47031 * 120.00027 * 2 1 3 21 21 C 1.36936 * 120.00020 * 274.99834 * 20 2 1 22 22 H 1.08001 * 120.00130 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00347 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99486 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46940 * 60.00164 * 25 23 21 27 27 H 1.48500 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47047 * 299.99648 * 25 23 21 29 29 H 1.09004 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47025 * 299.99770 * 1 2 3 31 31 H 1.08994 * 109.46877 * 60.00232 * 1 2 3 32 32 H 1.08996 * 109.47314 * 64.99749 * 4 2 1 33 33 H 1.09002 * 109.47113 * 305.00154 * 4 2 1 34 34 H 1.08998 * 109.47079 * 267.94668 * 6 5 4 35 35 H 1.09008 * 109.46686 * 27.94351 * 6 5 4 36 36 H 1.09000 * 109.47372 * 147.94153 * 6 5 4 37 37 H 1.08000 * 119.98693 * 0.26897 * 11 10 9 38 38 H 1.07999 * 119.97834 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99206 * 180.02562 * 13 12 11 40 40 H 1.07993 * 120.01411 * 180.02562 * 14 13 12 41 41 H 1.09005 * 113.60692 * 203.67634 * 17 9 7 42 42 H 1.09000 * 113.61584 * 334.57694 * 17 9 7 43 43 H 1.08999 * 113.61001 * 270.88268 * 18 17 9 44 44 H 1.08999 * 113.61500 * 139.98008 * 18 17 9 45 45 H 1.08996 * 113.61986 * 25.34847 * 19 9 7 46 46 H 1.09006 * 113.60964 * 156.25164 * 19 9 7 47 47 H 0.97006 * 120.00277 * 94.99958 * 20 2 1 48 48 H 0.96997 * 119.99860 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3344 0.2339 -1.7613 7 6 4.0758 -1.8988 -0.6116 8 8 3.3890 -2.8196 -0.2224 9 6 5.5728 -1.9536 -0.4476 10 6 6.3043 -2.0000 -1.7643 11 6 7.1148 -0.9462 -2.1425 12 6 7.7814 -0.9860 -3.3526 13 6 7.6381 -2.0796 -4.1865 14 6 6.8284 -3.1343 -3.8106 15 6 6.1604 -3.0957 -2.5982 16 9 5.3681 -4.1262 -2.2298 17 6 6.1264 -0.9016 0.5279 18 6 5.9131 -1.9383 1.6435 19 6 6.0439 -3.0185 0.5568 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3757 22 1 1.8927 1.0405 2.4242 23 6 2.6123 -0.6617 3.5091 24 7 2.9253 -1.9388 3.4499 25 14 2.7914 0.2704 5.1179 26 1 1.4692 0.8072 5.5288 27 1 3.3002 -0.6480 6.1681 28 1 3.7466 1.3928 4.9361 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1585 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 4.5727 -0.0090 -2.7968 35 1 3.7944 1.1801 -1.7251 36 1 5.2566 0.3196 -1.1866 37 1 7.2272 -0.0913 -1.4922 38 1 8.4142 -0.1620 -3.6475 39 1 8.1597 -2.1099 -5.1317 40 1 6.7169 -3.9885 -4.4619 41 1 7.1741 -0.6550 0.3555 42 1 5.4933 -0.0197 0.6245 43 1 4.9233 -1.8935 2.0977 44 1 6.7170 -1.9596 2.3793 45 1 5.3441 -3.8455 0.6767 46 1 7.0690 -3.3506 0.3923 47 1 2.2490 -1.6318 1.1527 48 1 3.2493 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700801112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:45 Heat of formation + Delta-G solvation = -27.688409 kcal Electronic energy + Delta-G solvation = -31502.227379 eV Core-core repulsion = 27472.371686 eV Total energy + Delta-G solvation = -4029.855693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.83523 -42.08327 -39.75626 -38.49933 -37.29953 -35.93521 -33.82014 -32.28618 -31.41604 -30.55241 -28.41972 -27.79097 -26.74641 -25.99818 -25.52077 -23.46654 -22.93816 -22.07841 -21.11534 -19.59088 -19.00226 -18.73043 -17.74342 -17.25980 -17.21161 -16.71479 -16.69091 -16.44087 -16.26827 -15.66827 -15.45929 -15.31371 -15.01201 -14.66993 -14.21926 -14.16958 -13.93865 -13.76074 -13.59041 -13.45094 -13.21986 -13.15692 -12.99912 -12.90317 -12.77732 -12.69812 -12.63151 -12.41330 -12.18376 -12.11404 -11.84175 -11.76625 -11.52106 -11.37025 -11.19651 -10.84775 -10.70753 -9.80057 -9.53243 -9.42220 -8.84160 -7.75993 -5.06019 0.22135 0.30174 1.46262 1.48613 1.54579 1.79745 2.19362 2.61798 2.68013 3.32157 3.46707 3.51227 3.59485 3.64824 3.69035 3.95681 3.97698 4.03466 4.18676 4.21183 4.34943 4.42380 4.47146 4.49380 4.56840 4.63029 4.66264 4.70301 4.75465 4.80259 4.90101 4.93003 4.98804 5.04416 5.08368 5.11354 5.18159 5.23745 5.28058 5.34080 5.45323 5.49085 5.52399 5.57776 5.78293 5.79006 6.00847 6.39824 6.57115 7.40613 7.49966 8.29990 8.54632 9.43101 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.004718 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.344028 B = 5933.436649 C = 6635.799012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.052 0.948 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.071 3.929 7 C 0.548 3.452 8 O -0.570 6.570 9 C -0.052 4.052 10 C -0.107 4.107 11 C -0.086 4.086 12 C -0.114 4.114 13 C -0.085 4.085 14 C -0.159 4.159 15 C 0.067 3.933 16 F -0.160 7.160 17 C -0.102 4.102 18 C -0.162 4.162 19 C -0.108 4.108 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.068 0.932 23 C -0.064 4.064 24 N -0.948 5.948 25 Si 0.957 3.043 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.277 1.277 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.125 0.875 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.100 0.900 47 H 0.382 0.618 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 6.522 -19.510 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.070 0.930 4 C -0.011 4.011 5 N -0.337 5.337 6 C -0.071 4.071 7 C 0.336 3.664 8 O -0.448 6.448 9 C -0.056 4.056 10 C -0.108 4.108 11 C -0.104 4.104 12 C -0.132 4.132 13 C -0.103 4.103 14 C -0.178 4.178 15 C 0.048 3.952 16 F -0.139 7.139 17 C -0.139 4.139 18 C -0.200 4.200 19 C -0.146 4.146 20 N -0.378 5.378 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.787 3.213 26 H -0.214 1.214 27 H -0.228 1.228 28 H -0.203 1.203 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.161 0.839 41 H 0.143 0.857 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.218 0.782 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.764 6.139 -19.195 23.855 hybrid contribution -0.745 -0.837 1.761 2.087 sum 12.019 5.302 -17.434 21.829 Atomic orbital electron populations 1.22252 0.97681 1.00295 1.01146 1.20923 0.92917 0.95575 0.86813 0.93044 1.21800 0.79757 1.00875 0.98626 1.47572 1.06737 1.21309 1.58046 1.22233 0.96040 0.90253 0.98581 1.19948 0.89290 0.81516 0.75634 1.90650 1.65231 1.39055 1.49896 1.20550 0.90879 1.01213 0.92916 1.19545 1.01173 0.95642 0.94480 1.21269 0.94558 0.96812 0.97722 1.21610 0.99244 0.99419 0.92937 1.21441 0.96171 0.91790 1.00883 1.21389 0.99391 1.02343 0.94640 1.18160 0.94766 0.85928 0.96299 1.91495 1.72590 1.57731 1.92036 1.23000 1.02266 0.95680 0.92998 1.23074 1.03743 0.96300 0.96853 1.22738 1.00699 0.96282 0.94887 1.42862 1.78006 1.11143 1.05781 1.19457 1.34937 0.93730 0.88548 0.91370 1.25343 1.03435 0.96573 1.00377 1.69879 1.51897 1.09674 1.28318 0.85472 0.77569 0.77503 0.80729 1.21369 1.22836 1.20268 0.95059 0.94388 0.90257 0.86627 0.93155 0.91395 0.89615 0.90043 0.82834 0.81396 0.81627 0.83919 0.85699 0.91444 0.89786 0.91143 0.94045 0.88208 0.78248 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.49 71.98 0.68 -4.94 16 2 C 0.15 5.96 3.20 44.99 0.14 6.11 16 3 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 4 C 0.11 3.98 5.14 86.38 0.44 4.42 16 5 N -0.61 -21.19 2.77 -846.74 -2.35 -23.54 16 6 C 0.07 1.70 8.72 127.77 1.11 2.81 16 7 C 0.55 23.02 5.08 87.66 0.44 23.46 16 8 O -0.57 -30.42 13.55 -3.05 -0.04 -30.46 16 9 C -0.05 -1.80 0.20 -53.15 -0.01 -1.81 16 10 C -0.11 -2.85 3.92 -19.82 -0.08 -2.92 16 11 C -0.09 -1.49 7.34 22.26 0.16 -1.33 16 12 C -0.11 -1.34 10.04 22.27 0.22 -1.12 16 13 C -0.09 -1.08 10.04 22.26 0.22 -0.86 16 14 C -0.16 -3.17 10.03 22.31 0.22 -2.94 16 15 C 0.07 1.93 7.04 22.38 0.16 2.09 16 16 F -0.16 -5.95 16.24 44.97 0.73 -5.22 16 17 C -0.10 -3.24 5.20 31.12 0.16 -3.08 16 18 C -0.16 -6.63 7.81 31.12 0.24 -6.39 16 19 C -0.11 -4.18 6.72 31.12 0.21 -3.97 16 20 N -0.73 -38.76 4.52 -322.95 -1.46 -40.22 16 21 C -0.23 -13.24 9.93 84.03 0.83 -12.40 16 22 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 23 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.95 -59.59 11.65 21.65 0.25 -59.33 16 25 Si 0.96 47.20 29.55 68.60 2.03 49.23 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 2.94 8.07 -2.39 -0.02 2.93 16 33 H 0.05 2.07 7.36 -2.39 -0.02 2.05 16 34 H 0.07 1.35 7.90 -2.39 -0.02 1.33 16 35 H 0.09 1.74 8.06 -2.38 -0.02 1.72 16 36 H 0.08 1.85 3.15 -2.39 -0.01 1.84 16 37 H 0.15 2.07 5.74 -2.91 -0.02 2.05 16 38 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.12 2.81 6.77 -2.38 -0.02 2.80 16 42 H 0.07 2.33 6.91 -2.39 -0.02 2.31 16 43 H 0.08 4.46 6.68 -2.39 -0.02 4.44 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.04 1.94 7.34 -2.39 -0.02 1.92 16 46 H 0.10 3.22 8.09 -2.38 -0.02 3.20 16 47 H 0.38 22.75 5.24 -92.70 -0.49 22.26 16 48 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -80.63 377.31 5.30 -75.33 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.49 Total: 40.36 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.65 Total: -6.15 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -3.56 Total: -123.09 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.04 Total: -30.46 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.73 Total: -5.22 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -80.63 5.30 -75.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700801112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.640 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds