Wall clock time and date at job start Tue Mar 31 2020 18:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99531 * 2 1 4 4 C 1.53007 * 109.46888 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46690 * 64.99863 * 4 3 2 6 6 C 1.36930 * 120.00337 * 274.48151 * 5 4 3 7 7 H 1.07997 * 120.00447 * 146.17675 * 6 5 4 8 8 C 1.38813 * 119.99968 * 326.17511 * 6 5 4 9 9 N 1.31623 * 120.00104 * 335.29939 * 8 6 5 10 10 Si 1.86804 * 120.00037 * 155.29528 * 8 6 5 11 11 H 1.48496 * 109.46984 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46780 * 120.00080 * 10 8 6 13 13 H 1.48500 * 109.47266 * 240.00290 * 10 8 6 14 14 C 1.46503 * 119.99530 * 94.48596 * 5 4 3 15 15 C 1.52998 * 109.46903 * 269.99317 * 14 5 4 16 16 N 1.46509 * 109.47195 * 180.02562 * 15 14 5 17 17 C 1.34776 * 119.99859 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99374 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.46849 * 179.97438 * 19 17 16 21 21 H 1.09007 * 110.66501 * 51.76603 * 20 19 17 22 22 C 1.54891 * 110.75638 * 174.99814 * 20 19 17 23 23 C 1.54264 * 104.18982 * 156.25987 * 22 20 19 24 24 C 1.53869 * 106.60483 * 336.39222 * 23 22 20 25 25 F 1.39894 * 110.03519 * 119.28641 * 24 23 22 26 26 F 1.39902 * 110.03414 * 240.67076 * 24 23 22 27 27 C 1.54270 * 106.59789 * 359.97438 * 24 23 22 28 28 H 1.08999 * 109.47351 * 60.00182 * 1 2 3 29 29 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47382 * 300.00070 * 1 2 3 31 31 H 1.08998 * 109.47312 * 60.00041 * 3 2 1 32 32 H 1.08999 * 109.47600 * 299.99595 * 3 2 1 33 33 H 1.09003 * 109.47167 * 305.00093 * 4 3 2 34 34 H 1.09003 * 109.47205 * 184.99728 * 4 3 2 35 35 H 0.97002 * 119.99848 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47227 * 149.99861 * 14 5 4 37 37 H 1.08995 * 109.47454 * 29.99655 * 14 5 4 38 38 H 1.08997 * 109.47820 * 300.00205 * 15 14 5 39 39 H 1.09002 * 109.47239 * 60.00400 * 15 14 5 40 40 H 0.96996 * 119.99583 * 0.02562 * 16 15 14 41 41 H 1.08995 * 109.47389 * 300.00052 * 19 17 16 42 42 H 1.08997 * 109.47146 * 60.00729 * 19 17 16 43 43 H 1.08997 * 110.48467 * 274.93985 * 22 20 19 44 44 H 1.09000 * 110.47871 * 37.45277 * 22 20 19 45 45 H 1.09002 * 110.02922 * 95.68060 * 23 22 20 46 46 H 1.09003 * 110.02866 * 217.05662 * 23 22 20 47 47 H 1.08990 * 110.49172 * 264.93300 * 27 24 23 48 48 H 1.09001 * 110.48404 * 142.28393 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0099 -0.8002 -1.3641 7 1 3.7917 -1.2690 -2.3122 8 6 4.3242 -1.5808 -0.2601 9 7 5.0408 -1.0748 0.7212 10 14 3.7299 -3.3493 -0.1669 11 1 2.9498 -3.6743 -1.3879 12 1 4.8991 -4.2598 -0.0700 13 1 2.8691 -3.5198 1.0311 14 6 4.3822 1.4030 -2.3814 15 6 3.1640 1.7018 -3.2575 16 7 3.5697 2.5403 -4.3884 17 6 2.6562 2.9319 -5.2987 18 8 1.4983 2.5907 -5.1814 19 6 3.0737 3.7939 -6.4621 20 6 1.8555 4.0929 -7.3383 21 1 1.0359 4.4858 -6.7365 22 6 2.2248 5.0794 -8.4739 23 6 1.1683 4.8121 -9.5656 24 6 0.6527 3.3804 -9.3374 25 9 -0.7216 3.4018 -9.0767 26 9 0.9144 2.5917 -10.4629 27 6 1.4145 2.8273 -8.1152 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.2601 -1.6202 1.4928 36 1 5.1342 0.8790 -2.9713 37 1 4.7997 2.3381 -2.0084 38 1 2.7464 0.7666 -3.6305 39 1 2.4119 2.2258 -2.6677 40 1 4.4957 2.8134 -4.4819 41 1 3.4922 4.7290 -6.0899 42 1 3.8250 3.2690 -7.0521 43 1 2.1577 6.1088 -8.1217 44 1 3.2263 4.8703 -8.8499 45 1 0.3477 5.5236 -9.4732 46 1 1.6229 4.8931 -10.5530 47 1 2.2839 2.2532 -8.4353 48 1 0.7557 2.2134 -7.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:00 Heat of formation + Delta-G solvation = -175.864452 kcal Electronic energy + Delta-G solvation = -29594.157439 eV Core-core repulsion = 25127.107126 eV Total energy + Delta-G solvation = -4467.050313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.06866 -47.14150 -39.79301 -37.67960 -37.19658 -35.72984 -34.15061 -31.77673 -31.21768 -29.46653 -28.88329 -27.57222 -25.78492 -25.60638 -23.79758 -21.86834 -21.25961 -20.92581 -20.47054 -19.84316 -17.82761 -17.16274 -16.81471 -16.70854 -16.24531 -15.83967 -15.46704 -15.28918 -14.96470 -14.75045 -14.57867 -14.49829 -14.04740 -13.91520 -13.78293 -13.60460 -13.48230 -13.27268 -13.09212 -12.74815 -12.41858 -12.06485 -11.94013 -11.87036 -11.80355 -11.62626 -11.36470 -11.17110 -11.00489 -10.85662 -10.82450 -10.76902 -10.65620 -10.53643 -10.05568 -9.93432 -9.70983 -9.66696 -8.83611 -8.63531 -8.40029 -6.63138 -5.72360 -3.25331 2.78785 3.32264 3.46561 3.54322 3.54920 3.59563 3.68158 3.92927 4.10631 4.56383 4.63735 4.70853 4.75345 4.77811 4.85080 4.93656 5.06958 5.26262 5.30367 5.36219 5.37716 5.42011 5.51274 5.55181 5.66579 5.77329 5.81483 5.85667 5.87704 5.92041 6.00069 6.10316 6.18078 6.29087 6.30647 6.56855 6.63554 6.68014 6.68667 6.92921 7.66636 7.72485 7.88842 8.12686 8.41310 8.55754 9.20902 9.87176 10.37438 11.29139 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002354 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.198049 B =11894.088693 C =11984.021691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.245 4.245 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.725 5.725 17 C 0.504 3.496 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.074 4.074 21 H 0.095 0.905 22 C -0.118 4.118 23 C -0.163 4.163 24 C 0.279 3.721 25 F -0.198 7.198 26 F -0.203 7.203 27 C -0.156 4.156 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 14.895 -15.640 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.032 4.032 4 C 0.010 3.990 5 N -0.291 5.291 6 C -0.374 4.374 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.031 4.031 16 N -0.376 5.376 17 C 0.289 3.711 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.093 4.093 21 H 0.114 0.886 22 C -0.156 4.156 23 C -0.201 4.201 24 C 0.243 3.757 25 F -0.180 7.180 26 F -0.184 7.184 27 C -0.194 4.194 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.230 0.770 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.924 14.347 -15.398 21.408 hybrid contribution -0.478 -0.629 -0.027 0.791 sum -4.402 13.717 -15.425 21.106 Atomic orbital electron populations 1.22639 0.84336 1.01457 0.98430 1.88230 1.16453 1.27431 1.94794 1.23450 0.98638 0.84323 0.96834 1.21166 0.87920 0.96519 0.93392 1.43597 1.74048 1.02402 1.09018 1.18857 1.40877 0.80705 0.96954 0.92380 1.24878 0.96865 0.97696 0.98258 1.69979 1.36376 1.36708 1.10252 0.86315 0.78150 0.84790 0.77880 1.20268 1.22329 1.21428 1.20998 0.92786 0.94722 0.90489 1.22466 1.00542 0.93719 0.86331 1.46151 1.11698 1.53005 1.26752 1.20589 0.86005 0.80911 0.83553 1.90705 1.18641 1.56623 1.76065 1.21693 0.99056 1.00872 0.95751 1.21841 0.97945 0.94254 0.95221 0.88636 1.22433 0.98585 1.00223 0.94319 1.23153 1.01174 0.93814 1.01947 1.21899 0.77727 0.91774 0.84338 1.93020 1.33566 1.97204 1.94161 1.93004 1.93706 1.76920 1.54740 1.23453 1.01909 0.99520 0.94506 0.95186 0.90789 0.95605 0.95890 0.95334 0.87465 0.94133 0.93782 0.92728 0.94379 0.91676 0.92445 0.77018 0.88406 0.88644 0.90044 0.90291 0.88796 0.88806 0.88695 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.02 9.96 -35.23 -0.35 -8.37 16 3 C 0.05 0.96 6.28 37.16 0.23 1.20 16 4 C 0.14 3.10 5.83 -4.04 -0.02 3.08 16 5 N -0.57 -13.53 2.45 -173.23 -0.43 -13.96 16 6 C -0.24 -6.58 8.74 -15.06 -0.13 -6.71 16 7 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.54 16 9 N -0.89 -25.33 11.37 55.49 0.63 -24.70 16 10 Si 0.90 22.42 29.62 -169.99 -5.04 17.39 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 C 0.14 2.61 5.82 -4.04 -0.02 2.59 16 15 C 0.09 1.67 6.00 -4.04 -0.02 1.64 16 16 N -0.73 -9.53 5.56 -60.29 -0.33 -9.87 16 17 C 0.50 6.65 7.66 -10.99 -0.08 6.56 16 18 O -0.54 -9.53 14.84 5.56 0.08 -9.45 16 19 C -0.13 -1.08 5.20 -27.88 -0.14 -1.22 16 20 C -0.07 -0.63 2.45 -88.61 -0.22 -0.85 16 21 H 0.10 0.98 7.88 -51.92 -0.41 0.57 16 22 C -0.12 -0.69 6.28 -25.07 -0.16 -0.84 16 23 C -0.16 -1.14 6.50 -25.62 -0.17 -1.31 16 24 C 0.28 2.87 2.57 -25.61 -0.07 2.81 16 25 F -0.20 -2.49 17.04 2.25 0.04 -2.46 16 26 F -0.20 -2.35 17.04 2.25 0.04 -2.31 16 27 C -0.16 -1.61 5.33 -25.06 -0.13 -1.74 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.57 6.47 -51.93 -0.34 0.24 16 33 H 0.11 2.83 5.37 -51.93 -0.28 2.55 16 34 H 0.04 0.82 7.84 -51.93 -0.41 0.42 16 35 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.09 6.47 -51.93 -0.34 0.76 16 40 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.60 7.99 -51.93 -0.41 0.19 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.36 8.05 -51.93 -0.42 -0.05 16 45 H 0.09 0.60 8.02 -51.93 -0.42 0.19 16 46 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 47 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 48 H 0.10 1.36 7.35 -51.93 -0.38 0.98 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -32.91 392.81 -7.26 -40.17 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.91 Total: 0.27 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 0.09 Total: 7.37 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.13 Total: -48.52 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.27 Total: -17.82 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.08 Total: -4.77 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.04 Total: 17.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.91 -7.26 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.696 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds