Wall clock time and date at job start Tue Mar 31 2020 18:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99531 * 2 1 4 4 C 1.53007 * 109.46888 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46690 * 64.99863 * 4 3 2 6 6 C 1.36930 * 120.00337 * 274.48151 * 5 4 3 7 7 H 1.07997 * 120.00447 * 146.17675 * 6 5 4 8 8 C 1.38813 * 119.99968 * 326.17511 * 6 5 4 9 9 N 1.31623 * 120.00104 * 335.29939 * 8 6 5 10 10 Si 1.86804 * 120.00037 * 155.29528 * 8 6 5 11 11 H 1.48496 * 109.46984 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46780 * 120.00080 * 10 8 6 13 13 H 1.48500 * 109.47266 * 240.00290 * 10 8 6 14 14 C 1.46503 * 119.99530 * 94.48596 * 5 4 3 15 15 C 1.52998 * 109.46903 * 269.99317 * 14 5 4 16 16 N 1.46509 * 109.47195 * 180.02562 * 15 14 5 17 17 C 1.34776 * 119.99859 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99374 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.46849 * 179.97438 * 19 17 16 21 21 H 1.09007 * 110.66501 * 51.76603 * 20 19 17 22 22 C 1.54891 * 110.75638 * 174.99814 * 20 19 17 23 23 C 1.54264 * 104.18982 * 156.25987 * 22 20 19 24 24 C 1.53869 * 106.60483 * 336.39222 * 23 22 20 25 25 F 1.39894 * 110.03519 * 119.28641 * 24 23 22 26 26 F 1.39902 * 110.03414 * 240.67076 * 24 23 22 27 27 C 1.54270 * 106.59789 * 359.97438 * 24 23 22 28 28 H 1.08999 * 109.47351 * 60.00182 * 1 2 3 29 29 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47382 * 300.00070 * 1 2 3 31 31 H 1.08998 * 109.47312 * 60.00041 * 3 2 1 32 32 H 1.08999 * 109.47600 * 299.99595 * 3 2 1 33 33 H 1.09003 * 109.47167 * 305.00093 * 4 3 2 34 34 H 1.09003 * 109.47205 * 184.99728 * 4 3 2 35 35 H 0.97002 * 119.99848 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47227 * 149.99861 * 14 5 4 37 37 H 1.08995 * 109.47454 * 29.99655 * 14 5 4 38 38 H 1.08997 * 109.47820 * 300.00205 * 15 14 5 39 39 H 1.09002 * 109.47239 * 60.00400 * 15 14 5 40 40 H 0.96996 * 119.99583 * 0.02562 * 16 15 14 41 41 H 1.08995 * 109.47389 * 300.00052 * 19 17 16 42 42 H 1.08997 * 109.47146 * 60.00729 * 19 17 16 43 43 H 1.08997 * 110.48467 * 274.93985 * 22 20 19 44 44 H 1.09000 * 110.47871 * 37.45277 * 22 20 19 45 45 H 1.09002 * 110.02922 * 95.68060 * 23 22 20 46 46 H 1.09003 * 110.02866 * 217.05662 * 23 22 20 47 47 H 1.08990 * 110.49172 * 264.93300 * 27 24 23 48 48 H 1.09001 * 110.48404 * 142.28393 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0099 -0.8002 -1.3641 7 1 3.7917 -1.2690 -2.3122 8 6 4.3242 -1.5808 -0.2601 9 7 5.0408 -1.0748 0.7212 10 14 3.7299 -3.3493 -0.1669 11 1 2.9498 -3.6743 -1.3879 12 1 4.8991 -4.2598 -0.0700 13 1 2.8691 -3.5198 1.0311 14 6 4.3822 1.4030 -2.3814 15 6 3.1640 1.7018 -3.2575 16 7 3.5697 2.5403 -4.3884 17 6 2.6562 2.9319 -5.2987 18 8 1.4983 2.5907 -5.1814 19 6 3.0737 3.7939 -6.4621 20 6 1.8555 4.0929 -7.3383 21 1 1.0359 4.4858 -6.7365 22 6 2.2248 5.0794 -8.4739 23 6 1.1683 4.8121 -9.5656 24 6 0.6527 3.3804 -9.3374 25 9 -0.7216 3.4018 -9.0767 26 9 0.9144 2.5917 -10.4629 27 6 1.4145 2.8273 -8.1152 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.2601 -1.6202 1.4928 36 1 5.1342 0.8790 -2.9713 37 1 4.7997 2.3381 -2.0084 38 1 2.7464 0.7666 -3.6305 39 1 2.4119 2.2258 -2.6677 40 1 4.4957 2.8134 -4.4819 41 1 3.4922 4.7290 -6.0899 42 1 3.8250 3.2690 -7.0521 43 1 2.1577 6.1088 -8.1217 44 1 3.2263 4.8703 -8.8499 45 1 0.3477 5.5236 -9.4732 46 1 1.6229 4.8931 -10.5530 47 1 2.2839 2.2532 -8.4353 48 1 0.7557 2.2134 -7.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701003952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:59 Heat of formation + Delta-G solvation = -197.451893 kcal Electronic energy + Delta-G solvation = -29595.093541 eV Core-core repulsion = 25127.107126 eV Total energy + Delta-G solvation = -4467.986415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.93777 -48.03426 -40.84066 -38.97824 -38.34486 -37.34125 -35.59700 -33.37660 -32.33148 -30.95652 -29.66396 -29.07145 -27.19124 -26.74971 -25.47463 -23.35447 -22.17112 -22.03726 -21.70233 -20.90256 -18.75780 -18.63466 -18.02015 -17.63050 -17.45323 -17.08161 -16.86684 -16.59439 -16.42147 -16.27975 -15.67445 -15.61755 -15.33290 -15.28196 -15.05536 -14.66991 -14.58038 -14.41824 -14.36408 -13.83841 -13.62568 -13.43912 -13.30886 -13.01946 -12.73997 -12.72571 -12.47199 -12.45121 -12.40141 -12.31115 -12.21125 -12.08060 -11.92277 -11.70982 -11.61307 -11.54499 -11.48969 -10.82668 -10.45138 -10.35465 -9.96077 -8.59237 -7.77137 -5.32093 1.44466 1.50515 1.58039 1.75726 2.26415 2.60372 2.80195 2.98462 3.19342 3.24507 3.35630 3.40003 3.72252 3.90137 4.03561 4.07889 4.21689 4.24266 4.29763 4.34036 4.40584 4.47610 4.49457 4.56648 4.67170 4.70626 4.72138 4.72727 4.79185 4.81235 4.85358 4.90136 4.93299 4.95634 5.06982 5.13252 5.23621 5.28161 5.39094 5.57367 5.72353 5.83167 6.44438 6.64949 6.70052 7.22671 7.40139 7.92492 8.38219 9.19696 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002354 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.198049 B =11894.088693 C =11984.021691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.588 5.588 6 C -0.241 4.241 7 H 0.043 0.957 8 C -0.017 4.017 9 N -0.912 5.912 10 Si 0.941 3.059 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.294 1.294 14 C 0.142 3.858 15 C 0.118 3.882 16 N -0.715 5.715 17 C 0.498 3.502 18 O -0.593 6.593 19 C -0.121 4.121 20 C -0.074 4.074 21 H 0.073 0.927 22 C -0.104 4.104 23 C -0.157 4.157 24 C 0.265 3.735 25 F -0.218 7.218 26 F -0.213 7.213 27 C -0.159 4.159 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.042 0.958 40 H 0.416 0.584 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 17.378 -17.003 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.308 5.308 6 C -0.372 4.372 7 H 0.061 0.939 8 C -0.215 4.215 9 N -0.557 5.557 10 Si 0.771 3.229 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.221 1.221 14 C 0.016 3.984 15 C -0.009 4.009 16 N -0.368 5.368 17 C 0.286 3.714 18 O -0.474 6.474 19 C -0.160 4.160 20 C -0.093 4.093 21 H 0.092 0.908 22 C -0.142 4.142 23 C -0.195 4.195 24 C 0.229 3.771 25 F -0.199 7.199 26 F -0.194 7.194 27 C -0.197 4.197 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.253 0.747 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.814 16.863 -16.793 23.964 hybrid contribution -0.894 -1.394 0.349 1.693 sum -3.709 15.468 -16.444 22.879 Atomic orbital electron populations 1.22795 0.82050 1.02456 0.99792 1.88153 1.19134 1.28762 1.95118 1.23330 0.97217 0.83946 0.98059 1.21120 0.89482 0.96736 0.91851 1.43750 1.74592 1.01939 1.10498 1.18878 1.39472 0.82582 0.96229 0.93908 1.25315 0.97668 1.00024 0.98463 1.70063 1.37675 1.37397 1.10593 0.85640 0.77609 0.82394 0.77216 1.20445 1.21932 1.22102 1.21053 0.93091 0.95049 0.89249 1.21831 0.99242 0.92583 0.87221 1.45958 1.12984 1.52234 1.25607 1.21616 0.85081 0.80473 0.84238 1.90700 1.20974 1.58468 1.77238 1.21752 0.99279 1.01539 0.93429 1.21825 0.97641 0.93929 0.95871 0.90843 1.22441 0.99133 1.00352 0.92240 1.23193 1.01816 0.91006 1.03469 1.22406 0.76806 0.93869 0.83986 1.92977 1.35269 1.97379 1.94303 1.92978 1.93663 1.77553 1.55208 1.23454 1.01546 1.00312 0.94394 0.94674 0.90110 0.93229 0.93543 0.94924 0.90909 0.91822 0.94188 0.92846 0.91631 0.95538 0.93932 0.74659 0.84699 0.85768 0.87856 0.87898 0.88295 0.87116 0.87642 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.92 9.96 -148.98 -1.48 -19.41 16 3 C 0.05 2.16 6.28 71.98 0.45 2.61 16 4 C 0.13 6.06 5.83 86.38 0.50 6.56 16 5 N -0.59 -27.83 2.45 -701.99 -1.72 -29.55 16 6 C -0.24 -13.16 8.74 84.03 0.73 -12.43 16 7 H 0.04 2.42 7.94 -2.91 -0.02 2.40 16 8 C -0.02 -0.98 4.95 84.86 0.42 -0.56 16 9 N -0.91 -52.64 11.37 21.65 0.25 -52.39 16 10 Si 0.94 46.78 29.62 68.60 2.03 48.81 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 14 C 0.14 5.25 5.82 86.38 0.50 5.75 16 15 C 0.12 4.13 6.00 86.38 0.52 4.65 16 16 N -0.72 -17.55 5.56 -463.04 -2.57 -20.13 16 17 C 0.50 12.44 7.66 87.66 0.67 13.11 16 18 O -0.59 -21.24 14.84 -3.03 -0.05 -21.28 16 19 C -0.12 -1.51 5.20 29.85 0.16 -1.36 16 20 C -0.07 -1.11 2.45 -9.49 -0.02 -1.13 16 21 H 0.07 1.45 7.88 -2.38 -0.02 1.43 16 22 C -0.10 -0.78 6.28 31.67 0.20 -0.58 16 23 C -0.16 -1.79 6.50 31.32 0.20 -1.58 16 24 C 0.27 5.32 2.57 31.32 0.08 5.41 16 25 F -0.22 -5.65 17.04 44.97 0.77 -4.89 16 26 F -0.21 -4.84 17.04 44.97 0.77 -4.07 16 27 C -0.16 -3.24 5.33 31.68 0.17 -3.07 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.29 6.47 -2.39 -0.02 1.27 16 33 H 0.07 3.88 5.37 -2.39 -0.01 3.87 16 34 H 0.06 2.50 7.84 -2.39 -0.02 2.48 16 35 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 37 H 0.07 2.08 7.86 -2.39 -0.02 2.06 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.62 6.47 -2.39 -0.02 1.60 16 40 H 0.42 6.91 8.47 -92.71 -0.79 6.13 16 41 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.12 0.95 7.99 -2.39 -0.02 0.93 16 43 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.10 0.35 8.05 -2.39 -0.02 0.34 16 45 H 0.10 1.04 8.02 -2.39 -0.02 1.02 16 46 H 0.11 0.92 8.02 -2.39 -0.02 0.90 16 47 H 0.11 1.84 7.91 -2.39 -0.02 1.82 16 48 H 0.07 1.85 7.35 -2.39 -0.02 1.83 16 Total: -1.00 -75.59 392.81 3.99 -71.59 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.17 Total: 11.78 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.83 Total: 19.53 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.05 Total: -102.07 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.53 Total: -40.69 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 1.53 Total: -8.96 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.59 3.99 -71.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.858 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds