Wall clock time and date at job start Tue Mar 31 2020 18:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.52995 * 109.47159 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47158 * 64.99728 * 4 3 2 6 6 C 1.36932 * 120.00061 * 264.43050 * 5 4 3 7 7 H 1.07997 * 120.00220 * 146.17971 * 6 5 4 8 8 C 1.38815 * 119.99696 * 326.17122 * 6 5 4 9 9 N 1.31613 * 120.00330 * 337.62368 * 8 6 5 10 10 Si 1.86807 * 119.99639 * 157.62427 * 8 6 5 11 11 H 1.48503 * 109.46934 * 90.00145 * 10 8 6 12 12 H 1.48495 * 109.47049 * 209.99888 * 10 8 6 13 13 H 1.48496 * 109.47023 * 330.00238 * 10 8 6 14 14 C 1.46507 * 119.99640 * 84.42956 * 5 4 3 15 15 C 1.53004 * 109.47044 * 90.00323 * 14 5 4 16 16 N 1.46504 * 109.46958 * 179.97438 * 15 14 5 17 17 C 1.34776 * 119.99696 * 179.97438 * 16 15 14 18 18 O 1.21276 * 120.00241 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99771 * 180.27885 * 17 16 15 20 20 C 1.52997 * 109.47296 * 179.72375 * 19 17 16 21 21 H 1.09000 * 110.43229 * 305.69696 * 20 19 17 22 22 C 1.54264 * 110.48975 * 183.15428 * 20 19 17 23 23 C 1.53874 * 106.60193 * 217.71186 * 22 20 19 24 24 C 1.54256 * 106.59704 * 0.02562 * 23 22 20 25 25 F 1.39899 * 110.48649 * 142.28850 * 24 23 22 26 26 F 1.39901 * 110.48720 * 264.79819 * 24 23 22 27 27 C 1.54889 * 110.48660 * 68.23726 * 20 19 17 28 28 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47150 * 300.00677 * 1 2 3 30 30 H 1.09001 * 109.46775 * 60.00496 * 1 2 3 31 31 H 1.09001 * 109.47601 * 59.99556 * 3 2 1 32 32 H 1.09001 * 109.46889 * 299.99461 * 3 2 1 33 33 H 1.09001 * 109.47233 * 304.99669 * 4 3 2 34 34 H 1.09005 * 109.47091 * 184.99616 * 4 3 2 35 35 H 0.97005 * 120.00351 * 179.97438 * 9 8 6 36 36 H 1.08990 * 109.47099 * 329.99838 * 14 5 4 37 37 H 1.09003 * 109.46764 * 209.99848 * 14 5 4 38 38 H 1.09004 * 109.47408 * 59.99553 * 15 14 5 39 39 H 1.09003 * 109.46952 * 299.99410 * 15 14 5 40 40 H 0.96996 * 119.99575 * 0.02562 * 16 15 14 41 41 H 1.09000 * 109.46999 * 299.72332 * 19 17 16 42 42 H 1.08997 * 109.47214 * 59.71866 * 19 17 16 43 43 H 1.09000 * 110.03449 * 337.00276 * 22 20 19 44 44 H 1.09007 * 110.02937 * 98.37758 * 22 20 19 45 45 H 1.08998 * 110.02710 * 119.28888 * 23 22 20 46 46 H 1.09001 * 110.02835 * 240.66763 * 23 22 20 47 47 H 1.08999 * 110.75908 * 274.93693 * 27 20 19 48 48 H 1.08999 * 110.75527 * 38.30958 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2077 -0.7849 -1.3019 7 1 3.9970 -1.3350 -2.2071 8 6 4.7127 -1.4451 -0.1902 9 7 5.3724 -0.7744 0.7302 10 14 4.4560 -3.2857 -0.0005 11 1 5.5857 -4.0110 -0.6354 12 1 4.3948 -3.6308 1.4425 13 1 3.1837 -3.6784 -0.6579 14 6 4.1708 1.3861 -2.4477 15 6 5.6136 1.8936 -2.4893 16 7 5.8079 2.7155 -3.6865 17 6 7.0098 3.2730 -3.9333 18 8 7.9304 3.0949 -3.1642 19 6 7.2079 4.1235 -5.1615 20 6 8.6489 4.6361 -5.1999 21 1 8.8950 5.1499 -4.2707 22 6 8.8563 5.5743 -6.4068 23 6 10.2675 5.2874 -6.9492 24 6 10.8681 4.1846 -6.0534 25 9 11.6291 3.2935 -6.8176 26 9 11.6493 4.7489 -5.0393 27 6 9.6336 3.4670 -5.4501 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8465 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0901 35 1 5.7250 -1.2357 1.5073 36 1 3.4877 2.2350 -2.4200 37 1 3.9705 0.7874 -3.3363 38 1 6.2968 1.0447 -2.5170 39 1 5.8139 2.4924 -1.6008 40 1 5.0712 2.8588 -4.3010 41 1 7.0106 3.5270 -6.0522 42 1 6.5218 4.9700 -5.1318 43 1 8.1115 5.3652 -7.1747 44 1 8.7821 6.6142 -6.0885 45 1 10.2074 4.9391 -7.9803 46 1 10.8786 6.1884 -6.8947 47 1 9.8911 2.9717 -4.5139 48 1 9.2157 2.7557 -6.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:05 Heat of formation + Delta-G solvation = -176.339601 kcal Electronic energy + Delta-G solvation = -29260.988811 eV Core-core repulsion = 24793.917894 eV Total energy + Delta-G solvation = -4467.070917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.95517 -47.08706 -39.69193 -37.59018 -37.24052 -35.75097 -34.07719 -31.69989 -31.20969 -29.51076 -28.82454 -27.50686 -25.73237 -25.69325 -23.58788 -22.21684 -21.32828 -20.70199 -20.22899 -19.73486 -17.71617 -17.10745 -16.78918 -16.59505 -16.12246 -15.74952 -15.54854 -15.30897 -15.01699 -14.84517 -14.59480 -14.29307 -14.02784 -13.91782 -13.76443 -13.55812 -13.42189 -13.20437 -13.00279 -12.76890 -12.39506 -12.00616 -11.90106 -11.87071 -11.74686 -11.54532 -11.32446 -11.12620 -10.96565 -10.83336 -10.79995 -10.69891 -10.69668 -10.45635 -10.14032 -9.94906 -9.72788 -9.51439 -8.87865 -8.58492 -8.41455 -6.63892 -5.74472 -3.25989 2.91341 3.41351 3.44741 3.51434 3.56398 3.60181 3.74617 3.99908 4.17554 4.55924 4.64725 4.72309 4.76440 4.85401 4.90316 5.03902 5.14174 5.32756 5.37640 5.39968 5.42151 5.48846 5.50460 5.59171 5.70749 5.76042 5.76205 5.90051 5.95645 5.99633 6.04439 6.09076 6.10010 6.21028 6.30385 6.56009 6.67365 6.78011 6.81819 7.03969 7.66064 7.84355 7.86174 8.02905 8.52775 8.56796 9.19964 9.84857 10.36899 11.28792 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002289 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.354504 B =12229.454366 C =13282.776079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.047 3.953 4 C 0.141 3.859 5 N -0.570 5.570 6 C -0.247 4.247 7 H 0.060 0.940 8 C 0.017 3.983 9 N -0.890 5.890 10 Si 0.900 3.100 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.139 3.861 15 C 0.097 3.903 16 N -0.727 5.727 17 C 0.502 3.498 18 O -0.539 6.539 19 C -0.133 4.133 20 C -0.075 4.075 21 H 0.094 0.906 22 C -0.118 4.118 23 C -0.160 4.160 24 C 0.275 3.725 25 F -0.201 7.201 26 F -0.195 7.195 27 C -0.152 4.152 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.254 0.746 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.394 0.606 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 14.050 -14.430 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.032 4.032 4 C 0.014 3.986 5 N -0.289 5.289 6 C -0.377 4.377 7 H 0.078 0.922 8 C -0.183 4.183 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.012 3.988 15 C -0.028 4.028 16 N -0.378 5.378 17 C 0.287 3.713 18 O -0.416 6.416 19 C -0.173 4.173 20 C -0.094 4.094 21 H 0.112 0.888 22 C -0.156 4.156 23 C -0.198 4.198 24 C 0.239 3.761 25 F -0.182 7.182 26 F -0.176 7.176 27 C -0.190 4.190 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.128 0.872 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.206 13.653 -13.682 19.366 hybrid contribution -0.541 -0.629 -0.074 0.833 sum 0.665 13.024 -13.755 18.955 Atomic orbital electron populations 1.22636 0.84181 1.01520 0.98418 1.88208 1.16618 1.27762 1.94830 1.23405 0.98887 0.84076 0.96877 1.21083 0.87284 0.96998 0.93196 1.43677 1.75164 1.04200 1.05895 1.18900 1.36676 0.82357 0.99743 0.92226 1.24995 0.96557 0.97830 0.98939 1.69960 1.35479 1.35504 1.12325 0.86359 0.78012 0.85718 0.76968 1.21665 1.21643 1.20329 1.21077 0.91449 0.93979 0.92320 1.22448 1.01338 0.93853 0.85164 1.46257 1.12172 1.52055 1.27316 1.20588 0.82971 0.80513 0.87251 1.90720 1.41067 1.61012 1.48804 1.21736 0.97711 1.00296 0.97604 1.21679 0.93281 0.95073 0.99336 0.88799 1.22195 0.95269 1.00409 0.97704 1.23101 0.98050 0.98546 1.00123 1.22055 0.84913 0.87246 0.81929 1.92992 1.78888 1.70112 1.76209 1.93013 1.77370 1.85589 1.61606 1.23568 0.92898 0.98607 1.03892 0.90689 0.95488 0.95311 0.95559 0.95554 0.87227 0.94291 0.93585 0.94529 0.93368 0.91081 0.92355 0.77371 0.88794 0.88600 0.90321 0.90447 0.88666 0.89253 0.87569 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.66 10.44 -35.23 -0.37 -8.03 16 3 C 0.05 0.92 6.28 37.15 0.23 1.15 16 4 C 0.14 3.21 5.63 -4.04 -0.02 3.19 16 5 N -0.57 -13.52 2.41 -173.23 -0.42 -13.94 16 6 C -0.25 -6.63 9.28 -15.06 -0.14 -6.77 16 7 H 0.06 1.61 7.92 -52.49 -0.42 1.19 16 8 C 0.02 0.46 4.91 -17.43 -0.09 0.37 16 9 N -0.89 -25.59 11.34 55.49 0.63 -24.96 16 10 Si 0.90 22.17 29.61 -169.99 -5.03 17.14 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.14 2.66 5.80 -4.04 -0.02 2.63 16 15 C 0.10 1.85 6.00 -4.04 -0.02 1.83 16 16 N -0.73 -10.22 5.56 -60.29 -0.33 -10.56 16 17 C 0.50 7.16 7.63 -10.99 -0.08 7.07 16 18 O -0.54 -10.26 14.61 5.56 0.08 -10.18 16 19 C -0.13 -1.18 5.05 -27.89 -0.14 -1.32 16 20 C -0.07 -0.71 2.45 -88.96 -0.22 -0.93 16 21 H 0.09 1.07 7.96 -51.93 -0.41 0.65 16 22 C -0.12 -0.77 6.37 -25.61 -0.16 -0.93 16 23 C -0.16 -1.20 6.42 -25.62 -0.16 -1.36 16 24 C 0.27 3.03 2.49 -25.01 -0.06 2.97 16 25 F -0.20 -2.49 17.17 2.25 0.04 -2.45 16 26 F -0.19 -2.57 17.17 2.25 0.04 -2.54 16 27 C -0.15 -1.71 5.29 -24.67 -0.13 -1.84 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.11 2.91 5.34 -51.93 -0.28 2.64 16 34 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.39 4.10 8.47 -40.82 -0.35 3.75 16 41 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.38 7.84 -51.93 -0.41 -0.03 16 44 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 46 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 47 H 0.11 1.51 7.17 -51.93 -0.37 1.14 16 48 H 0.09 0.95 8.00 -51.93 -0.42 0.53 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -33.13 396.99 -7.40 -40.53 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.10 Total: 1.35 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 0.09 Total: 7.65 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.12 Total: -49.45 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.29 Total: -18.21 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.08 Total: -4.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.13 -7.40 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.813 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds