Wall clock time and date at job start Tue Mar 31 2020 18:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.52995 * 109.47159 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47158 * 64.99728 * 4 3 2 6 6 C 1.36932 * 120.00061 * 264.43050 * 5 4 3 7 7 H 1.07997 * 120.00220 * 146.17971 * 6 5 4 8 8 C 1.38815 * 119.99696 * 326.17122 * 6 5 4 9 9 N 1.31613 * 120.00330 * 337.62368 * 8 6 5 10 10 Si 1.86807 * 119.99639 * 157.62427 * 8 6 5 11 11 H 1.48503 * 109.46934 * 90.00145 * 10 8 6 12 12 H 1.48495 * 109.47049 * 209.99888 * 10 8 6 13 13 H 1.48496 * 109.47023 * 330.00238 * 10 8 6 14 14 C 1.46507 * 119.99640 * 84.42956 * 5 4 3 15 15 C 1.53004 * 109.47044 * 90.00323 * 14 5 4 16 16 N 1.46504 * 109.46958 * 179.97438 * 15 14 5 17 17 C 1.34776 * 119.99696 * 179.97438 * 16 15 14 18 18 O 1.21276 * 120.00241 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99771 * 180.27885 * 17 16 15 20 20 C 1.52997 * 109.47296 * 179.72375 * 19 17 16 21 21 H 1.09000 * 110.43229 * 305.69696 * 20 19 17 22 22 C 1.54264 * 110.48975 * 183.15428 * 20 19 17 23 23 C 1.53874 * 106.60193 * 217.71186 * 22 20 19 24 24 C 1.54256 * 106.59704 * 0.02562 * 23 22 20 25 25 F 1.39899 * 110.48649 * 142.28850 * 24 23 22 26 26 F 1.39901 * 110.48720 * 264.79819 * 24 23 22 27 27 C 1.54889 * 110.48660 * 68.23726 * 20 19 17 28 28 H 1.08994 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47150 * 300.00677 * 1 2 3 30 30 H 1.09001 * 109.46775 * 60.00496 * 1 2 3 31 31 H 1.09001 * 109.47601 * 59.99556 * 3 2 1 32 32 H 1.09001 * 109.46889 * 299.99461 * 3 2 1 33 33 H 1.09001 * 109.47233 * 304.99669 * 4 3 2 34 34 H 1.09005 * 109.47091 * 184.99616 * 4 3 2 35 35 H 0.97005 * 120.00351 * 179.97438 * 9 8 6 36 36 H 1.08990 * 109.47099 * 329.99838 * 14 5 4 37 37 H 1.09003 * 109.46764 * 209.99848 * 14 5 4 38 38 H 1.09004 * 109.47408 * 59.99553 * 15 14 5 39 39 H 1.09003 * 109.46952 * 299.99410 * 15 14 5 40 40 H 0.96996 * 119.99575 * 0.02562 * 16 15 14 41 41 H 1.09000 * 109.46999 * 299.72332 * 19 17 16 42 42 H 1.08997 * 109.47214 * 59.71866 * 19 17 16 43 43 H 1.09000 * 110.03449 * 337.00276 * 22 20 19 44 44 H 1.09007 * 110.02937 * 98.37758 * 22 20 19 45 45 H 1.08998 * 110.02710 * 119.28888 * 23 22 20 46 46 H 1.09001 * 110.02835 * 240.66763 * 23 22 20 47 47 H 1.08999 * 110.75908 * 274.93693 * 27 20 19 48 48 H 1.08999 * 110.75527 * 38.30958 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2077 -0.7849 -1.3019 7 1 3.9970 -1.3350 -2.2071 8 6 4.7127 -1.4451 -0.1902 9 7 5.3724 -0.7744 0.7302 10 14 4.4560 -3.2857 -0.0005 11 1 5.5857 -4.0110 -0.6354 12 1 4.3948 -3.6308 1.4425 13 1 3.1837 -3.6784 -0.6579 14 6 4.1708 1.3861 -2.4477 15 6 5.6136 1.8936 -2.4893 16 7 5.8079 2.7155 -3.6865 17 6 7.0098 3.2730 -3.9333 18 8 7.9304 3.0949 -3.1642 19 6 7.2079 4.1235 -5.1615 20 6 8.6489 4.6361 -5.1999 21 1 8.8950 5.1499 -4.2707 22 6 8.8563 5.5743 -6.4068 23 6 10.2675 5.2874 -6.9492 24 6 10.8681 4.1846 -6.0534 25 9 11.6291 3.2935 -6.8176 26 9 11.6493 4.7489 -5.0393 27 6 9.6336 3.4670 -5.4501 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8465 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0901 35 1 5.7250 -1.2357 1.5073 36 1 3.4877 2.2350 -2.4200 37 1 3.9705 0.7874 -3.3363 38 1 6.2968 1.0447 -2.5170 39 1 5.8139 2.4924 -1.6008 40 1 5.0712 2.8588 -4.3010 41 1 7.0106 3.5270 -6.0522 42 1 6.5218 4.9700 -5.1318 43 1 8.1115 5.3652 -7.1747 44 1 8.7821 6.6142 -6.0885 45 1 10.2074 4.9391 -7.9803 46 1 10.8786 6.1884 -6.8947 47 1 9.8911 2.9717 -4.5139 48 1 9.2157 2.7557 -6.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701003953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:04 Heat of formation + Delta-G solvation = -198.643911 kcal Electronic energy + Delta-G solvation = -29261.955999 eV Core-core repulsion = 24793.917894 eV Total energy + Delta-G solvation = -4468.038105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.88624 -48.04231 -40.83242 -38.92402 -38.34273 -37.35845 -35.58726 -33.37285 -32.33976 -30.97131 -29.64042 -29.05330 -27.11930 -26.74100 -25.29132 -23.75534 -22.19131 -21.85428 -21.57847 -20.85367 -18.76525 -18.58955 -18.02452 -17.60561 -17.29489 -17.02759 -16.91185 -16.61159 -16.42051 -16.30275 -15.88177 -15.53631 -15.35456 -15.14872 -15.11308 -14.58870 -14.51255 -14.39907 -14.35852 -13.87286 -13.53753 -13.45365 -13.37741 -12.91532 -12.73106 -12.67183 -12.55393 -12.45087 -12.36750 -12.26643 -12.23869 -12.10161 -11.93850 -11.76890 -11.50388 -11.50009 -11.42292 -10.76331 -10.47477 -10.32421 -9.96709 -8.59664 -7.79761 -5.33353 1.45639 1.49019 1.58486 1.78339 2.29702 2.58419 2.78070 2.97204 3.21678 3.25604 3.35007 3.42711 3.72443 3.92486 4.04287 4.11454 4.26024 4.29477 4.33421 4.37413 4.43957 4.47652 4.55766 4.63640 4.67165 4.70735 4.71433 4.77179 4.83000 4.85206 4.87047 4.93627 4.97319 4.98538 5.05369 5.15042 5.26373 5.30174 5.39732 5.59233 5.71402 5.82617 6.44906 6.67167 6.73463 7.20693 7.44905 7.90879 8.37561 9.19624 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002289 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.354504 B =12229.454366 C =13282.776079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.138 3.862 5 N -0.586 5.586 6 C -0.243 4.243 7 H 0.056 0.944 8 C -0.034 4.034 9 N -0.921 5.921 10 Si 0.950 3.050 11 H -0.289 1.289 12 H -0.296 1.296 13 H -0.273 1.273 14 C 0.145 3.855 15 C 0.120 3.880 16 N -0.713 5.713 17 C 0.494 3.506 18 O -0.596 6.596 19 C -0.118 4.118 20 C -0.075 4.075 21 H 0.066 0.934 22 C -0.106 4.106 23 C -0.152 4.152 24 C 0.260 3.740 25 F -0.213 7.213 26 F -0.214 7.214 27 C -0.156 4.156 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.021 0.979 39 H 0.029 0.971 40 H 0.417 0.583 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.061 0.939 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 16.027 -17.552 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.022 4.022 4 C 0.012 3.988 5 N -0.307 5.307 6 C -0.374 4.374 7 H 0.074 0.926 8 C -0.231 4.231 9 N -0.566 5.566 10 Si 0.780 3.220 11 H -0.216 1.216 12 H -0.222 1.222 13 H -0.198 1.198 14 C 0.018 3.982 15 C -0.007 4.007 16 N -0.366 5.366 17 C 0.282 3.718 18 O -0.476 6.476 19 C -0.158 4.158 20 C -0.094 4.094 21 H 0.085 0.915 22 C -0.143 4.143 23 C -0.189 4.189 24 C 0.224 3.776 25 F -0.194 7.194 26 F -0.196 7.196 27 C -0.194 4.194 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.254 0.746 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.134 0.866 46 H 0.116 0.884 47 H 0.080 0.920 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.348 15.657 -16.859 23.047 hybrid contribution 0.241 -1.226 0.881 1.529 sum -1.107 14.431 -15.978 21.559 Atomic orbital electron populations 1.22829 0.81394 1.02667 1.00174 1.88128 1.19776 1.28811 1.95225 1.23179 0.96175 0.84014 0.98795 1.20986 0.89971 0.96232 0.91627 1.43859 1.75583 1.03890 1.07325 1.19090 1.34891 0.84184 0.99229 0.92648 1.25582 0.97291 1.00886 0.99298 1.70101 1.37252 1.36471 1.12783 0.85551 0.77877 0.82242 0.76361 1.21636 1.22245 1.19767 1.21153 0.91640 0.94648 0.90772 1.21793 1.00269 0.92328 0.86324 1.45980 1.13408 1.51122 1.26123 1.21723 0.81753 0.80033 0.88313 1.90718 1.42860 1.62884 1.51168 1.21796 0.97905 1.00789 0.95270 1.21665 0.93175 0.94728 0.99876 0.91547 1.22198 0.95232 1.00195 0.96694 1.23148 0.98429 0.97204 1.00163 1.22590 0.84298 0.88453 0.82285 1.92962 1.79263 1.70806 1.76333 1.92969 1.77967 1.85840 1.62783 1.23565 0.94062 0.99643 1.02126 0.89999 0.93606 0.93514 0.93447 0.93501 0.91214 0.93657 0.94378 0.91073 0.92344 0.96002 0.95288 0.74590 0.85367 0.84721 0.87054 0.88940 0.86602 0.88424 0.91986 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.68 10.44 -148.98 -1.56 -18.23 16 3 C 0.06 2.13 6.28 71.98 0.45 2.59 16 4 C 0.14 6.33 5.63 86.38 0.49 6.82 16 5 N -0.59 -27.92 2.41 -701.99 -1.69 -29.61 16 6 C -0.24 -13.25 9.28 84.04 0.78 -12.47 16 7 H 0.06 3.01 7.92 -2.91 -0.02 2.99 16 8 C -0.03 -1.94 4.91 84.86 0.42 -1.53 16 9 N -0.92 -55.30 11.34 21.65 0.25 -55.05 16 10 Si 0.95 46.69 29.61 68.60 2.03 48.72 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 14 C 0.14 5.34 5.80 86.38 0.50 5.84 16 15 C 0.12 4.66 6.00 86.38 0.52 5.18 16 16 N -0.71 -19.06 5.56 -463.05 -2.57 -21.63 16 17 C 0.49 13.70 7.63 87.66 0.67 14.37 16 18 O -0.60 -23.84 14.61 -3.02 -0.04 -23.89 16 19 C -0.12 -1.67 5.05 29.85 0.15 -1.52 16 20 C -0.08 -1.30 2.45 -9.72 -0.02 -1.32 16 21 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 22 C -0.11 -0.93 6.37 31.32 0.20 -0.73 16 23 C -0.15 -1.82 6.42 31.31 0.20 -1.62 16 24 C 0.26 5.65 2.49 31.71 0.08 5.73 16 25 F -0.21 -5.26 17.17 44.97 0.77 -4.49 16 26 F -0.21 -5.90 17.17 44.97 0.77 -5.13 16 27 C -0.16 -3.52 5.29 31.93 0.17 -3.36 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.07 3.84 5.34 -2.39 -0.01 3.83 16 34 H 0.05 1.95 8.11 -2.38 -0.02 1.93 16 35 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.07 2.16 8.05 -2.39 -0.02 2.14 16 37 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 38 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.42 7.22 8.47 -92.71 -0.79 6.44 16 41 H 0.13 1.05 8.06 -2.39 -0.02 1.03 16 42 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 0.34 7.84 -2.39 -0.02 0.32 16 44 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.12 0.95 8.11 -2.39 -0.02 0.93 16 46 H 0.10 1.04 8.12 -2.39 -0.02 1.02 16 47 H 0.06 1.94 7.17 -2.39 -0.02 1.93 16 48 H 0.11 2.07 8.00 -2.39 -0.02 2.05 16 Total: -1.00 -79.46 396.99 3.97 -75.50 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.16 Total: 13.82 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.85 Total: 20.00 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.02 Total: -106.30 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.60 Total: -42.12 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 1.54 Total: -9.62 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -79.46 3.97 -75.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.147 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds