Wall clock time and date at job start Tue Mar 31 2020 18:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99931 * 2 1 4 4 H 1.08006 * 120.00072 * 206.07297 * 3 2 1 5 5 C 1.38810 * 120.00172 * 26.07189 * 3 2 1 6 6 N 1.31613 * 120.00085 * 9.31620 * 5 3 2 7 7 Si 1.86809 * 120.00041 * 189.32032 * 5 3 2 8 8 H 1.48505 * 109.46957 * 89.99927 * 7 5 3 9 9 H 1.48502 * 109.47158 * 209.99670 * 7 5 3 10 10 H 1.48493 * 109.47084 * 329.99678 * 7 5 3 11 11 C 1.46500 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47229 * 90.00381 * 11 2 1 13 13 C 1.53001 * 109.47132 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.47320 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00320 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99618 * 4.79402 * 15 14 13 17 17 C 1.50695 * 120.00127 * 184.80040 * 15 14 13 18 18 C 1.50705 * 112.84621 * 293.99028 * 17 15 14 19 19 C 1.38264 * 119.99007 * 283.09998 * 18 17 15 20 20 C 1.38221 * 120.05396 * 180.02562 * 19 18 17 21 21 C 1.38224 * 120.02457 * 359.97438 * 20 19 18 22 22 C 1.38437 * 119.97351 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.02608 * 180.02562 * 22 21 20 24 24 C 1.38178 * 119.98467 * 102.82720 * 18 17 15 25 25 C 1.53778 * 113.69467 * 65.25921 * 17 15 14 26 26 C 1.53783 * 87.07964 * 89.12968 * 25 17 15 27 27 C 1.53776 * 113.61643 * 162.79969 * 17 15 14 28 28 H 1.08997 * 109.46943 * 265.90804 * 1 2 3 29 29 H 1.08998 * 109.46909 * 25.90550 * 1 2 3 30 30 H 1.08998 * 109.46546 * 145.90781 * 1 2 3 31 31 H 0.97008 * 120.00504 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47301 * 329.99654 * 11 2 1 33 33 H 1.09003 * 109.46839 * 210.00057 * 11 2 1 34 34 H 1.08997 * 109.47572 * 59.99439 * 12 11 2 35 35 H 1.09003 * 109.46946 * 299.99611 * 12 11 2 36 36 H 1.09007 * 109.46840 * 59.99801 * 13 12 11 37 37 H 1.08994 * 109.47507 * 299.99469 * 13 12 11 38 38 H 0.97006 * 119.99898 * 0.02562 * 14 13 12 39 39 H 1.08007 * 119.97277 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.99010 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.01263 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.01318 * 359.97438 * 24 18 17 43 43 H 1.09001 * 113.61679 * 203.67833 * 25 17 15 44 44 H 1.09003 * 113.61405 * 334.58113 * 25 17 15 45 45 H 1.09004 * 113.61111 * 270.88453 * 26 25 17 46 46 H 1.09003 * 113.69192 * 139.99740 * 26 25 17 47 47 H 1.09003 * 113.61789 * 25.34026 * 27 17 15 48 48 H 1.08998 * 113.62000 * 156.24706 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1473 1.2335 -0.4111 5 6 1.5616 2.3268 0.5283 6 7 0.4285 2.2363 1.1917 7 14 2.3784 3.9910 0.2977 8 1 1.8825 4.6164 -0.9547 9 1 2.0516 4.8670 1.4514 10 1 3.8501 3.8125 0.2129 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 7 3.4618 -3.4571 -2.8251 15 6 4.1252 -4.6041 -3.0719 16 8 4.4440 -5.3297 -2.1539 17 6 4.4708 -4.9848 -4.4884 18 6 3.2546 -5.2764 -5.3293 19 6 2.5888 -6.4798 -5.1877 20 6 1.4736 -6.7489 -5.9586 21 6 1.0223 -5.8146 -6.8718 22 6 1.6881 -4.6092 -7.0145 23 9 1.2476 -3.6951 -7.9064 24 6 2.8020 -4.3385 -6.2376 25 6 5.4687 -4.0266 -5.1599 26 6 6.5859 -4.9175 -4.5916 27 6 5.5614 -6.0644 -4.5875 28 1 -0.3633 -0.0733 1.0250 29 1 -0.3633 0.9244 -0.4490 30 1 -0.3632 -0.8511 -0.5760 31 1 0.0176 3.0335 1.5613 32 1 1.6085 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5134 34 1 3.0416 -0.9499 -1.9567 35 1 1.5001 -1.8399 -1.9571 36 1 2.6293 -3.7945 -0.9301 37 1 4.1705 -2.9040 -0.9300 38 1 3.1464 -2.9110 -3.5623 39 1 2.9405 -7.2103 -4.4740 40 1 0.9545 -7.6894 -5.8474 41 1 0.1506 -6.0248 -7.4738 42 1 3.3194 -3.3966 -6.3446 43 1 5.4158 -4.0337 -6.2486 44 1 5.4571 -3.0203 -4.7411 45 1 6.9152 -4.6226 -3.5952 46 1 7.4146 -5.0747 -5.2820 47 1 5.6248 -6.7032 -3.7066 48 1 5.5339 -6.6286 -5.5197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707392636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:31 Heat of formation + Delta-G solvation = -22.037578 kcal Electronic energy + Delta-G solvation = -28526.045230 eV Core-core repulsion = 24496.434575 eV Total energy + Delta-G solvation = -4029.610655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.15730 -41.28407 -38.95750 -37.54080 -36.20168 -34.78391 -32.15932 -31.64655 -30.88252 -29.99673 -26.91729 -26.15717 -25.86592 -25.02618 -22.86150 -22.63031 -22.02768 -21.38835 -20.41506 -19.09836 -18.09972 -16.86753 -16.72915 -16.55644 -16.22581 -16.01601 -15.82965 -15.77879 -15.05284 -15.00583 -14.60838 -14.21118 -13.88732 -13.64417 -13.60227 -13.27223 -12.92206 -12.87342 -12.71705 -12.63509 -12.29394 -12.10551 -11.75417 -11.70217 -11.43529 -11.24501 -11.00814 -10.84253 -10.82321 -10.81369 -10.62094 -10.45446 -10.21813 -10.02927 -9.89220 -9.79004 -9.27771 -9.02624 -8.94341 -8.52187 -6.70317 -5.74635 -3.22387 0.77107 0.83970 2.49883 3.03871 3.27877 3.37266 3.43404 3.44892 3.87209 4.00206 4.22289 4.28568 4.45342 4.48297 4.50900 4.64779 4.70905 4.83228 5.01988 5.08744 5.24582 5.34712 5.39087 5.42664 5.43499 5.46130 5.58992 5.68789 5.72845 5.75485 5.78741 5.79873 5.89305 5.93637 6.06194 6.09520 6.10268 6.16946 6.41443 6.52288 6.54032 6.76101 6.79430 6.94404 7.39251 7.48399 7.70102 7.80252 8.15466 8.42861 9.24460 9.86903 10.37765 11.32045 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.002606 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.588037 B =10742.678834 C =11537.050171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.720 5.720 15 C 0.541 3.459 16 O -0.535 6.535 17 C -0.072 4.072 18 C -0.037 4.037 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.155 4.155 22 C 0.102 3.898 23 F -0.138 7.138 24 C -0.148 4.148 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.111 4.111 28 H 0.018 0.982 29 H 0.055 0.945 30 H -0.008 1.008 31 H 0.253 0.747 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.400 0.600 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -18.942 -17.789 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.370 5.370 15 C 0.326 3.674 16 O -0.412 6.412 17 C -0.075 4.075 18 C -0.038 4.038 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.174 4.174 22 C 0.083 3.917 23 F -0.117 7.117 24 C -0.167 4.167 25 C -0.163 4.163 26 C -0.178 4.178 27 C -0.149 4.149 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.011 0.989 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.234 0.766 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.589 -19.248 -17.016 26.523 hybrid contribution -0.072 1.484 -0.665 1.628 sum 6.517 -17.764 -17.681 25.897 Atomic orbital electron populations 1.20768 0.82756 0.97054 0.97634 1.43858 1.01806 1.00631 1.86148 1.19188 0.99990 0.86328 1.33139 0.91565 1.25109 0.97843 0.98809 0.97796 1.70049 1.19266 1.27792 1.38180 0.86246 0.78960 0.84056 0.77211 1.21474 1.21675 1.20443 1.20588 0.96358 0.88619 0.91732 1.22520 0.99466 0.94145 1.02986 1.21494 1.00465 0.97077 0.81289 1.46076 1.57256 1.23713 1.09939 1.19615 0.77589 0.81081 0.89144 1.90692 1.53816 1.51108 1.45589 1.21000 0.92829 1.01102 0.92620 1.19222 0.95248 0.93873 0.95434 1.21121 0.95641 0.97047 0.99753 1.21017 0.95855 0.99086 0.94539 1.21201 1.01526 0.93270 1.01401 1.17649 0.95329 0.87842 0.90890 1.91521 1.88879 1.65543 1.65733 1.21030 0.96953 1.01068 0.97635 1.23064 0.94274 0.98144 1.00850 1.22833 0.96757 0.96289 1.01917 1.22870 0.92593 0.96038 1.03395 0.96381 0.92582 0.98936 0.93695 0.94457 0.93283 0.91577 0.92236 0.91667 0.91547 0.76602 0.85096 0.84786 0.84688 0.84359 0.88679 0.90401 0.89685 0.90693 0.89447 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.99 59.85 0.54 4.59 16 2 N -0.60 -15.18 2.92 -181.12 -0.53 -15.71 16 3 C -0.26 -7.05 9.63 -15.06 -0.15 -7.19 16 4 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 5 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 6 N -0.91 -26.64 10.75 55.49 0.60 -26.05 16 7 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.16 3.15 5.69 -4.05 -0.02 3.12 16 12 C -0.15 -2.48 5.65 -26.73 -0.15 -2.63 16 13 C 0.12 1.73 5.68 -4.04 -0.02 1.71 16 14 N -0.72 -9.02 5.55 -60.29 -0.33 -9.35 16 15 C 0.54 6.93 6.43 -10.99 -0.07 6.86 16 16 O -0.54 -8.64 15.95 5.56 0.09 -8.55 16 17 C -0.07 -0.68 0.91 -156.00 -0.14 -0.83 16 18 C -0.04 -0.34 4.82 -104.63 -0.50 -0.84 16 19 C -0.12 -1.02 9.39 -39.58 -0.37 -1.40 16 20 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 21 C -0.16 -1.28 10.03 -39.51 -0.40 -1.68 16 22 C 0.10 0.98 7.30 -39.42 -0.29 0.70 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.15 -1.33 9.00 -39.51 -0.36 -1.69 16 25 C -0.13 -0.99 6.20 -25.92 -0.16 -1.15 16 26 C -0.14 -1.14 7.81 -25.92 -0.20 -1.34 16 27 C -0.11 -0.95 6.75 -25.92 -0.17 -1.13 16 28 H 0.02 0.48 7.80 -51.93 -0.40 0.07 16 29 H 0.06 1.51 6.82 -51.93 -0.35 1.15 16 30 H -0.01 -0.17 8.10 -51.93 -0.42 -0.59 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.40 4.39 8.48 -40.82 -0.35 4.04 16 39 H 0.13 1.08 8.03 -52.48 -0.42 0.66 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.14 1.07 7.03 -52.49 -0.37 0.71 16 43 H 0.09 0.62 7.45 -51.93 -0.39 0.23 16 44 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.87 7.34 -51.93 -0.38 0.49 16 48 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -31.95 397.23 -9.83 -41.78 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.69 Total: 0.55 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.96 Total: -3.98 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.27 Total: -51.11 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.95 -9.83 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707392636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds