Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99931 * 2 1 4 4 H 1.08006 * 120.00072 * 206.07297 * 3 2 1 5 5 C 1.38810 * 120.00172 * 26.07189 * 3 2 1 6 6 N 1.31613 * 120.00085 * 9.31620 * 5 3 2 7 7 Si 1.86809 * 120.00041 * 189.32032 * 5 3 2 8 8 H 1.48505 * 109.46957 * 89.99927 * 7 5 3 9 9 H 1.48502 * 109.47158 * 209.99670 * 7 5 3 10 10 H 1.48493 * 109.47084 * 329.99678 * 7 5 3 11 11 C 1.46500 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47229 * 90.00381 * 11 2 1 13 13 C 1.53001 * 109.47132 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.47320 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00320 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99618 * 4.79402 * 15 14 13 17 17 C 1.50695 * 120.00127 * 184.80040 * 15 14 13 18 18 C 1.50705 * 112.84621 * 293.99028 * 17 15 14 19 19 C 1.38264 * 119.99007 * 283.09998 * 18 17 15 20 20 C 1.38221 * 120.05396 * 180.02562 * 19 18 17 21 21 C 1.38224 * 120.02457 * 359.97438 * 20 19 18 22 22 C 1.38437 * 119.97351 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.02608 * 180.02562 * 22 21 20 24 24 C 1.38178 * 119.98467 * 102.82720 * 18 17 15 25 25 C 1.53778 * 113.69467 * 65.25921 * 17 15 14 26 26 C 1.53783 * 87.07964 * 89.12968 * 25 17 15 27 27 C 1.53776 * 113.61643 * 162.79969 * 17 15 14 28 28 H 1.08997 * 109.46943 * 265.90804 * 1 2 3 29 29 H 1.08998 * 109.46909 * 25.90550 * 1 2 3 30 30 H 1.08998 * 109.46546 * 145.90781 * 1 2 3 31 31 H 0.97008 * 120.00504 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47301 * 329.99654 * 11 2 1 33 33 H 1.09003 * 109.46839 * 210.00057 * 11 2 1 34 34 H 1.08997 * 109.47572 * 59.99439 * 12 11 2 35 35 H 1.09003 * 109.46946 * 299.99611 * 12 11 2 36 36 H 1.09007 * 109.46840 * 59.99801 * 13 12 11 37 37 H 1.08994 * 109.47507 * 299.99469 * 13 12 11 38 38 H 0.97006 * 119.99898 * 0.02562 * 14 13 12 39 39 H 1.08007 * 119.97277 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.99010 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.01263 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.01318 * 359.97438 * 24 18 17 43 43 H 1.09001 * 113.61679 * 203.67833 * 25 17 15 44 44 H 1.09003 * 113.61405 * 334.58113 * 25 17 15 45 45 H 1.09004 * 113.61111 * 270.88453 * 26 25 17 46 46 H 1.09003 * 113.69192 * 139.99740 * 26 25 17 47 47 H 1.09003 * 113.61789 * 25.34026 * 27 17 15 48 48 H 1.08998 * 113.62000 * 156.24706 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1473 1.2335 -0.4111 5 6 1.5616 2.3268 0.5283 6 7 0.4285 2.2363 1.1917 7 14 2.3784 3.9910 0.2977 8 1 1.8825 4.6164 -0.9547 9 1 2.0516 4.8670 1.4514 10 1 3.8501 3.8125 0.2129 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 7 3.4618 -3.4571 -2.8251 15 6 4.1252 -4.6041 -3.0719 16 8 4.4440 -5.3297 -2.1539 17 6 4.4708 -4.9848 -4.4884 18 6 3.2546 -5.2764 -5.3293 19 6 2.5888 -6.4798 -5.1877 20 6 1.4736 -6.7489 -5.9586 21 6 1.0223 -5.8146 -6.8718 22 6 1.6881 -4.6092 -7.0145 23 9 1.2476 -3.6951 -7.9064 24 6 2.8020 -4.3385 -6.2376 25 6 5.4687 -4.0266 -5.1599 26 6 6.5859 -4.9175 -4.5916 27 6 5.5614 -6.0644 -4.5875 28 1 -0.3633 -0.0733 1.0250 29 1 -0.3633 0.9244 -0.4490 30 1 -0.3632 -0.8511 -0.5760 31 1 0.0176 3.0335 1.5613 32 1 1.6085 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5134 34 1 3.0416 -0.9499 -1.9567 35 1 1.5001 -1.8399 -1.9571 36 1 2.6293 -3.7945 -0.9301 37 1 4.1705 -2.9040 -0.9300 38 1 3.1464 -2.9110 -3.5623 39 1 2.9405 -7.2103 -4.4740 40 1 0.9545 -7.6894 -5.8474 41 1 0.1506 -6.0248 -7.4738 42 1 3.3194 -3.3966 -6.3446 43 1 5.4158 -4.0337 -6.2486 44 1 5.4571 -3.0203 -4.7411 45 1 6.9152 -4.6226 -3.5952 46 1 7.4146 -5.0747 -5.2820 47 1 5.6248 -6.7032 -3.7066 48 1 5.5339 -6.6286 -5.5197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707392636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = -39.084421 kcal Electronic energy + Delta-G solvation = -28526.784436 eV Core-core repulsion = 24496.434575 eV Total energy + Delta-G solvation = -4030.349861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.89955 -42.10003 -39.78790 -38.40991 -37.81663 -36.19854 -33.81511 -32.45487 -31.64416 -31.50983 -28.09387 -27.77937 -26.83642 -26.33039 -23.91545 -23.49631 -22.99298 -22.35910 -22.04489 -20.04584 -18.84990 -18.71711 -17.60704 -17.33549 -17.19928 -16.93292 -16.77241 -16.71866 -16.56718 -16.11122 -15.71488 -15.36814 -15.08398 -14.79487 -14.59850 -14.56607 -14.33695 -14.30001 -13.49128 -13.39470 -13.31950 -13.04049 -12.95959 -12.80683 -12.78124 -12.63540 -12.51724 -12.38395 -12.28805 -12.12749 -11.93783 -11.86956 -11.49253 -11.48549 -11.29593 -11.01852 -10.61612 -10.14290 -9.93557 -9.65760 -8.74162 -7.85269 -5.35532 0.10474 0.19665 1.47227 1.47706 1.50781 1.56927 2.08296 2.50772 2.58058 3.18525 3.30865 3.32137 3.54224 3.60698 3.64418 3.71304 3.82081 3.99350 4.09018 4.09744 4.18894 4.26326 4.40856 4.43845 4.45711 4.63932 4.75854 4.77184 4.78864 4.83925 4.87156 4.91777 4.98516 5.05183 5.07034 5.09954 5.14091 5.23787 5.26837 5.31080 5.39634 5.42337 5.46399 5.49346 5.61076 5.68469 5.88683 6.34961 6.47551 7.14261 7.15570 7.86269 8.31973 9.20093 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.002606 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.588037 B =10742.678834 C =11537.050171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.620 5.620 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.267 1.267 11 C 0.151 3.849 12 C -0.128 4.128 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.540 3.460 16 O -0.572 6.572 17 C -0.070 4.070 18 C -0.044 4.044 19 C -0.125 4.125 20 C -0.084 4.084 21 C -0.156 4.156 22 C 0.082 3.918 23 F -0.149 7.149 24 C -0.149 4.149 25 C -0.118 4.118 26 C -0.141 4.141 27 C -0.108 4.108 28 H -0.006 1.006 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.249 0.751 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.409 0.591 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -19.748 -19.746 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.211 1.211 9 H -0.222 1.222 10 H -0.192 1.192 11 C 0.024 3.976 12 C -0.168 4.168 13 C 0.008 3.992 14 N -0.365 5.365 15 C 0.327 3.673 16 O -0.451 6.451 17 C -0.073 4.073 18 C -0.044 4.044 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.174 4.174 22 C 0.063 3.937 23 F -0.127 7.127 24 C -0.167 4.167 25 C -0.156 4.156 26 C -0.178 4.178 27 C -0.145 4.145 28 H 0.012 0.988 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.245 0.755 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.133 0.867 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.425 -20.077 -19.009 28.628 hybrid contribution -0.334 1.625 -0.045 1.659 sum 7.091 -18.452 -19.054 27.456 Atomic orbital electron populations 1.20522 0.83013 0.96975 0.96401 1.44115 1.02045 1.01736 1.86477 1.19540 1.00202 0.87387 1.32292 0.91073 1.25897 0.98622 1.02297 0.98043 1.70215 1.20738 1.28289 1.39534 0.85218 0.78560 0.79640 0.76726 1.21115 1.22237 1.19168 1.20756 0.95749 0.86960 0.94119 1.22145 0.99739 0.94899 1.00010 1.21202 0.99813 0.95748 0.82467 1.45969 1.57224 1.23959 1.09387 1.20171 0.76541 0.80329 0.90296 1.90675 1.55167 1.52161 1.47144 1.20914 0.93587 1.02267 0.90538 1.19182 0.95306 0.94242 0.95697 1.21299 0.96033 0.97052 0.99953 1.21292 0.95388 0.99872 0.93664 1.21465 1.01784 0.92771 1.01403 1.17899 0.96090 0.88350 0.91360 1.91494 1.89061 1.66003 1.66166 1.21119 0.96834 1.01398 0.97364 1.23105 0.93052 0.97545 1.01860 1.22815 0.97475 0.96062 1.01440 1.22900 0.92270 0.95831 1.03543 0.98818 0.95210 0.95695 0.94231 0.93504 0.93691 0.92085 0.92044 0.92026 0.91972 0.75502 0.84953 0.82327 0.83088 0.83383 0.86662 0.90613 0.91572 0.88720 0.91256 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.80 8.99 127.77 1.15 9.95 16 2 N -0.62 -31.16 2.92 -726.95 -2.12 -33.28 16 3 C -0.26 -14.44 9.63 84.03 0.81 -13.63 16 4 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -3.01 5.11 84.86 0.43 -2.58 16 6 N -0.94 -56.15 10.75 21.65 0.23 -55.91 16 7 Si 0.97 44.88 29.56 68.60 2.03 46.90 16 8 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 C 0.15 5.99 5.69 86.38 0.49 6.48 16 12 C -0.13 -4.04 5.65 30.59 0.17 -3.87 16 13 C 0.13 3.66 5.68 86.38 0.49 4.15 16 14 N -0.71 -17.04 5.55 -463.06 -2.57 -19.61 16 15 C 0.54 13.36 6.43 87.66 0.56 13.93 16 16 O -0.57 -18.39 15.95 -3.03 -0.05 -18.44 16 17 C -0.07 -1.22 0.91 -53.15 -0.05 -1.27 16 18 C -0.04 -0.72 4.82 -19.87 -0.10 -0.81 16 19 C -0.13 -1.95 9.39 22.27 0.21 -1.74 16 20 C -0.08 -1.09 10.04 22.26 0.22 -0.87 16 21 C -0.16 -2.24 10.03 22.31 0.22 -2.02 16 22 C 0.08 1.45 7.30 22.38 0.16 1.61 16 23 F -0.15 -3.01 17.27 44.97 0.78 -2.24 16 24 C -0.15 -2.39 9.00 22.31 0.20 -2.19 16 25 C -0.12 -1.60 6.20 31.12 0.19 -1.41 16 26 C -0.14 -2.04 7.81 31.12 0.24 -1.80 16 27 C -0.11 -1.68 6.75 31.12 0.21 -1.47 16 28 H -0.01 -0.35 7.80 -2.39 -0.02 -0.37 16 29 H 0.03 1.61 6.82 -2.39 -0.02 1.59 16 30 H 0.02 1.06 8.10 -2.39 -0.02 1.04 16 31 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 32 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 33 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 8.30 8.48 -92.70 -0.79 7.51 16 39 H 0.13 2.00 8.03 -2.91 -0.02 1.97 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.99 7.03 -2.91 -0.02 1.97 16 43 H 0.12 1.14 7.45 -2.39 -0.02 1.12 16 44 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 45 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 1.36 7.34 -2.39 -0.02 1.34 16 48 H 0.11 1.27 8.09 -2.39 -0.02 1.25 16 Total: -1.00 -68.76 397.23 4.10 -64.67 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.17 Total: 15.46 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.63 Total: 2.45 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.46 Total: -108.81 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.76 4.10 -64.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707392636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.582 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds