Wall clock time and date at job start Tue Mar 31 2020 18:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00048 * 2 1 4 4 H 1.08002 * 119.99949 * 202.94789 * 3 2 1 5 5 C 1.38819 * 119.99954 * 22.95504 * 3 2 1 6 6 N 1.31618 * 119.99842 * 10.00339 * 5 3 2 7 7 Si 1.86794 * 119.99811 * 190.00199 * 5 3 2 8 8 H 1.48499 * 109.47277 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.46816 * 120.00253 * 7 5 3 10 10 H 1.48499 * 109.47234 * 239.99613 * 7 5 3 11 11 C 1.46499 * 119.99919 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47382 * 89.99553 * 11 2 1 13 13 C 1.52991 * 109.47147 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47333 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00259 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00080 * 354.96262 * 15 14 13 17 17 C 1.50704 * 119.99504 * 174.96616 * 15 14 13 18 18 C 1.52995 * 115.55130 * 65.97340 * 17 15 14 19 19 C 1.50699 * 109.47089 * 39.59120 * 18 17 15 20 20 C 1.38251 * 119.97681 * 84.54272 * 19 18 17 21 21 C 1.38199 * 120.02751 * 180.02562 * 20 19 18 22 22 C 1.38457 * 119.97433 * 0.23358 * 21 20 19 23 23 F 1.35101 * 120.02826 * 179.72598 * 22 21 20 24 24 C 1.38470 * 119.94583 * 359.49047 * 22 21 20 25 25 C 1.38193 * 119.97266 * 0.52833 * 24 22 21 26 26 C 1.53002 * 117.51195 * 211.66941 * 17 15 14 27 27 C 1.52993 * 117.49892 * 280.29805 * 17 15 14 28 28 H 1.09001 * 109.47187 * 273.69610 * 1 2 3 29 29 H 1.08999 * 109.47282 * 33.69484 * 1 2 3 30 30 H 1.08998 * 109.47403 * 153.69745 * 1 2 3 31 31 H 0.96994 * 119.99807 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46856 * 330.00046 * 11 2 1 33 33 H 1.08994 * 109.47038 * 209.99623 * 11 2 1 34 34 H 1.08999 * 109.46368 * 60.00002 * 12 11 2 35 35 H 1.08997 * 109.46664 * 300.00314 * 12 11 2 36 36 H 1.08999 * 109.47442 * 60.00238 * 13 12 11 37 37 H 1.09003 * 109.47250 * 300.00314 * 13 12 11 38 38 H 0.97007 * 119.99798 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47595 * 279.59194 * 18 17 15 40 40 H 1.08998 * 109.47464 * 159.58806 * 18 17 15 41 41 H 1.08002 * 119.98617 * 0.02562 * 20 19 18 42 42 H 1.07999 * 120.00950 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.00525 * 180.26041 * 24 22 21 44 44 H 1.08005 * 119.98248 * 179.74377 * 25 24 22 45 45 H 1.09004 * 117.49861 * 214.97072 * 26 17 15 46 46 H 1.09000 * 117.50176 * 359.97438 * 26 17 15 47 47 H 1.09008 * 117.50156 * 359.97438 * 27 17 15 48 48 H 1.08999 * 117.50073 * 144.97982 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1656 1.2229 -0.3647 5 6 1.5380 2.3405 0.4689 6 7 0.3813 2.2657 1.0924 7 14 2.3567 4.0001 0.2149 8 1 3.6405 3.8135 -0.5077 9 1 1.4618 4.8766 -0.5828 10 1 2.6188 4.6299 1.5340 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2179 -3.0345 -1.4438 14 7 3.4626 -3.4567 -2.8252 15 6 4.1252 -4.6041 -3.0720 16 8 4.5984 -5.2404 -2.1544 17 6 4.2781 -5.0962 -4.4881 18 6 5.1364 -4.2197 -5.4023 19 6 6.3250 -3.7041 -4.6326 20 6 7.4623 -4.4813 -4.5156 21 6 8.5527 -4.0097 -3.8096 22 6 8.5040 -2.7602 -3.2151 23 9 9.5673 -2.3004 -2.5199 24 6 7.3665 -1.9802 -3.3377 25 6 6.2772 -2.4541 -4.0440 26 6 4.3288 -6.6094 -4.7089 27 6 3.0850 -5.8178 -5.1179 28 1 -0.3633 0.0662 1.0255 29 1 -0.3634 0.8550 -0.5701 30 1 -0.3634 -0.9212 -0.4554 31 1 -0.0462 3.0725 1.4196 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5132 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 2.6293 -3.7946 -0.9302 37 1 4.1704 -2.9040 -0.9301 38 1 3.1470 -2.9107 -3.5623 39 1 4.5432 -3.3786 -5.7610 40 1 5.4816 -4.8093 -6.2516 41 1 7.4986 -5.4575 -4.9762 42 1 9.4408 -4.6173 -3.7180 43 1 7.3290 -1.0037 -2.8780 44 1 5.3884 -1.8476 -4.1362 45 1 4.9737 -6.9804 -5.5056 46 1 4.2520 -7.2492 -3.8298 47 1 2.1895 -5.9370 -4.5078 48 1 2.9113 -5.6678 -6.1835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712976217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:13 Heat of formation + Delta-G solvation = -19.648936 kcal Electronic energy + Delta-G solvation = -28627.614029 eV Core-core repulsion = 24598.106953 eV Total energy + Delta-G solvation = -4029.507075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.99525 -40.52526 -38.97599 -37.10652 -36.14765 -34.73101 -32.38609 -31.95087 -31.30507 -29.96040 -27.28409 -26.03952 -25.57065 -23.36660 -23.27347 -22.70626 -21.90324 -21.61206 -20.49150 -19.26976 -17.86119 -17.10065 -16.73914 -16.50607 -15.88593 -15.83556 -15.63760 -15.56730 -14.95204 -14.86858 -14.31551 -14.21483 -13.84721 -13.74614 -13.62735 -13.41118 -12.94406 -12.85534 -12.71053 -12.63559 -12.20004 -12.03004 -11.84208 -11.69335 -11.44482 -11.19718 -11.01860 -10.85151 -10.81505 -10.79693 -10.48346 -10.33488 -10.18115 -9.88365 -9.80064 -9.72548 -9.27965 -8.93998 -8.72523 -8.54872 -6.74340 -5.72351 -3.19356 0.93293 1.06710 2.59720 3.10252 3.34074 3.36848 3.43903 3.45720 3.46261 4.11687 4.22358 4.43396 4.48789 4.50903 4.56712 4.60536 4.74208 4.92160 5.03312 5.06121 5.23035 5.28994 5.32821 5.41159 5.43422 5.45306 5.54866 5.59758 5.70681 5.81257 5.82021 5.84564 5.90133 5.95813 6.05506 6.10174 6.19444 6.28722 6.40904 6.58784 6.71248 6.75366 6.75964 6.93357 7.40552 7.56540 7.73524 7.81274 8.26954 8.40489 9.24721 9.87764 10.36724 11.32884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003036 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.045542 B = 9219.962436 C =11086.638987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.149 4.149 13 C 0.121 3.879 14 N -0.721 5.721 15 C 0.551 3.449 16 O -0.537 6.537 17 C -0.156 4.156 18 C -0.035 4.035 19 C -0.099 4.099 20 C -0.078 4.078 21 C -0.154 4.154 22 C 0.097 3.903 23 F -0.141 7.141 24 C -0.148 4.148 25 C -0.078 4.078 26 C -0.144 4.144 27 C -0.158 4.158 28 H 0.027 0.973 29 H 0.045 0.955 30 H -0.005 1.005 31 H 0.251 0.749 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -16.301 -16.934 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.190 4.190 13 C -0.003 4.003 14 N -0.371 5.371 15 C 0.336 3.664 16 O -0.414 6.414 17 C -0.159 4.159 18 C -0.073 4.073 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.173 4.173 22 C 0.077 3.923 23 F -0.120 7.120 24 C -0.167 4.167 25 C -0.096 4.096 26 C -0.182 4.182 27 C -0.195 4.195 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.013 0.987 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.138 -16.585 -16.119 25.252 hybrid contribution 0.407 1.413 -0.207 1.485 sum 10.544 -15.173 -16.326 24.656 Atomic orbital electron populations 1.20787 0.82599 0.95486 0.99167 1.43899 1.01885 1.00641 1.86219 1.19239 0.98073 0.85673 1.35336 0.91395 1.25050 0.97623 0.98587 0.98482 1.70076 1.17505 1.27026 1.40882 0.86187 0.78674 0.84274 0.77424 1.20343 1.21656 1.21691 1.20590 0.96311 0.88513 0.91881 1.22513 0.99397 0.94181 1.02875 1.21446 1.00302 0.96926 0.81580 1.46064 1.57832 1.23630 1.09619 1.19348 0.77459 0.80757 0.88856 1.90696 1.47623 1.57163 1.45873 1.21488 1.03619 0.96255 0.94550 1.20081 0.92832 0.98856 0.95517 1.19795 0.95566 0.94648 0.99911 1.20814 0.91888 0.99189 0.97670 1.21100 1.00623 0.95139 1.00417 1.17756 0.84855 0.94076 0.95565 1.91501 1.54614 1.88961 1.76915 1.21195 0.92737 1.01129 1.01629 1.20938 0.97798 0.95245 0.95650 1.23047 1.00156 0.91494 1.03458 1.23100 0.92438 1.02413 1.01559 0.95449 0.93649 0.98680 0.93819 0.94478 0.93347 0.91611 0.92249 0.91990 0.91694 0.76740 0.89807 0.89636 0.85222 0.84896 0.84508 0.85045 0.87946 0.87855 0.88201 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.96 59.85 0.54 4.57 16 2 N -0.60 -15.03 2.93 -181.12 -0.53 -15.56 16 3 C -0.25 -6.90 9.67 -15.06 -0.15 -7.05 16 4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 5 C 0.00 0.01 5.15 -17.43 -0.09 -0.08 16 6 N -0.91 -26.55 10.55 55.49 0.59 -25.96 16 7 Si 0.90 21.76 29.56 -169.99 -5.03 16.73 16 8 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 12 C -0.15 -2.38 5.65 -26.73 -0.15 -2.53 16 13 C 0.12 1.72 5.68 -4.05 -0.02 1.69 16 14 N -0.72 -8.54 5.45 -60.30 -0.33 -8.87 16 15 C 0.55 7.01 5.63 -10.98 -0.06 6.95 16 16 O -0.54 -9.14 16.72 5.56 0.09 -9.05 16 17 C -0.16 -1.38 2.20 -155.66 -0.34 -1.72 16 18 C -0.04 -0.25 5.48 -27.89 -0.15 -0.41 16 19 C -0.10 -0.94 4.28 -104.62 -0.45 -1.39 16 20 C -0.08 -0.74 9.72 -39.59 -0.38 -1.12 16 21 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 22 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 23 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 24 C -0.15 -1.74 10.03 -39.51 -0.40 -2.14 16 25 C -0.08 -0.83 9.11 -39.60 -0.36 -1.19 16 26 C -0.14 -1.13 9.70 -26.73 -0.26 -1.39 16 27 C -0.16 -1.10 9.95 -26.73 -0.27 -1.36 16 28 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 29 H 0.04 1.19 7.16 -51.93 -0.37 0.82 16 30 H -0.01 -0.11 8.04 -51.93 -0.42 -0.53 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 33 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 3.85 8.48 -40.82 -0.35 3.50 16 39 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 40 H 0.09 0.45 7.92 -51.93 -0.41 0.04 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 46 H 0.10 0.99 8.01 -51.93 -0.42 0.57 16 47 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -33.03 404.52 -10.12 -43.15 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.80 Total: 0.48 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.25 Total: -5.20 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.27 Total: -50.39 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.03 -10.12 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712976217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.497 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds