Wall clock time and date at job start Tue Mar 31 2020 18:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00048 * 2 1 4 4 H 1.08002 * 119.99949 * 202.94789 * 3 2 1 5 5 C 1.38819 * 119.99954 * 22.95504 * 3 2 1 6 6 N 1.31618 * 119.99842 * 10.00339 * 5 3 2 7 7 Si 1.86794 * 119.99811 * 190.00199 * 5 3 2 8 8 H 1.48499 * 109.47277 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.46816 * 120.00253 * 7 5 3 10 10 H 1.48499 * 109.47234 * 239.99613 * 7 5 3 11 11 C 1.46499 * 119.99919 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47382 * 89.99553 * 11 2 1 13 13 C 1.52991 * 109.47147 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47333 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00259 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00080 * 354.96262 * 15 14 13 17 17 C 1.50704 * 119.99504 * 174.96616 * 15 14 13 18 18 C 1.52995 * 115.55130 * 65.97340 * 17 15 14 19 19 C 1.50699 * 109.47089 * 39.59120 * 18 17 15 20 20 C 1.38251 * 119.97681 * 84.54272 * 19 18 17 21 21 C 1.38199 * 120.02751 * 180.02562 * 20 19 18 22 22 C 1.38457 * 119.97433 * 0.23358 * 21 20 19 23 23 F 1.35101 * 120.02826 * 179.72598 * 22 21 20 24 24 C 1.38470 * 119.94583 * 359.49047 * 22 21 20 25 25 C 1.38193 * 119.97266 * 0.52833 * 24 22 21 26 26 C 1.53002 * 117.51195 * 211.66941 * 17 15 14 27 27 C 1.52993 * 117.49892 * 280.29805 * 17 15 14 28 28 H 1.09001 * 109.47187 * 273.69610 * 1 2 3 29 29 H 1.08999 * 109.47282 * 33.69484 * 1 2 3 30 30 H 1.08998 * 109.47403 * 153.69745 * 1 2 3 31 31 H 0.96994 * 119.99807 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46856 * 330.00046 * 11 2 1 33 33 H 1.08994 * 109.47038 * 209.99623 * 11 2 1 34 34 H 1.08999 * 109.46368 * 60.00002 * 12 11 2 35 35 H 1.08997 * 109.46664 * 300.00314 * 12 11 2 36 36 H 1.08999 * 109.47442 * 60.00238 * 13 12 11 37 37 H 1.09003 * 109.47250 * 300.00314 * 13 12 11 38 38 H 0.97007 * 119.99798 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47595 * 279.59194 * 18 17 15 40 40 H 1.08998 * 109.47464 * 159.58806 * 18 17 15 41 41 H 1.08002 * 119.98617 * 0.02562 * 20 19 18 42 42 H 1.07999 * 120.00950 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.00525 * 180.26041 * 24 22 21 44 44 H 1.08005 * 119.98248 * 179.74377 * 25 24 22 45 45 H 1.09004 * 117.49861 * 214.97072 * 26 17 15 46 46 H 1.09000 * 117.50176 * 359.97438 * 26 17 15 47 47 H 1.09008 * 117.50156 * 359.97438 * 27 17 15 48 48 H 1.08999 * 117.50073 * 144.97982 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1656 1.2229 -0.3647 5 6 1.5380 2.3405 0.4689 6 7 0.3813 2.2657 1.0924 7 14 2.3567 4.0001 0.2149 8 1 3.6405 3.8135 -0.5077 9 1 1.4618 4.8766 -0.5828 10 1 2.6188 4.6299 1.5340 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2179 -3.0345 -1.4438 14 7 3.4626 -3.4567 -2.8252 15 6 4.1252 -4.6041 -3.0720 16 8 4.5984 -5.2404 -2.1544 17 6 4.2781 -5.0962 -4.4881 18 6 5.1364 -4.2197 -5.4023 19 6 6.3250 -3.7041 -4.6326 20 6 7.4623 -4.4813 -4.5156 21 6 8.5527 -4.0097 -3.8096 22 6 8.5040 -2.7602 -3.2151 23 9 9.5673 -2.3004 -2.5199 24 6 7.3665 -1.9802 -3.3377 25 6 6.2772 -2.4541 -4.0440 26 6 4.3288 -6.6094 -4.7089 27 6 3.0850 -5.8178 -5.1179 28 1 -0.3633 0.0662 1.0255 29 1 -0.3634 0.8550 -0.5701 30 1 -0.3634 -0.9212 -0.4554 31 1 -0.0462 3.0725 1.4196 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5132 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 2.6293 -3.7946 -0.9302 37 1 4.1704 -2.9040 -0.9301 38 1 3.1470 -2.9107 -3.5623 39 1 4.5432 -3.3786 -5.7610 40 1 5.4816 -4.8093 -6.2516 41 1 7.4986 -5.4575 -4.9762 42 1 9.4408 -4.6173 -3.7180 43 1 7.3290 -1.0037 -2.8780 44 1 5.3884 -1.8476 -4.1362 45 1 4.9737 -6.9804 -5.5056 46 1 4.2520 -7.2492 -3.8298 47 1 2.1895 -5.9370 -4.5078 48 1 2.9113 -5.6678 -6.1835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712976217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:12 Heat of formation + Delta-G solvation = -37.899293 kcal Electronic energy + Delta-G solvation = -28628.405424 eV Core-core repulsion = 24598.106953 eV Total energy + Delta-G solvation = -4030.298470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.93827 -41.37895 -39.82537 -38.14645 -37.56772 -36.12859 -33.76023 -33.02550 -32.09594 -31.61273 -28.10091 -27.90066 -27.10272 -24.59369 -24.05384 -23.27761 -23.07644 -22.56007 -22.10051 -20.26903 -18.72899 -18.71501 -17.90425 -17.37573 -17.16612 -16.81169 -16.67508 -16.58734 -16.32779 -15.96104 -15.54562 -15.12294 -15.02106 -14.88405 -14.59811 -14.58153 -14.41066 -14.35053 -13.76794 -13.35590 -13.31371 -13.03038 -12.97378 -12.82021 -12.72226 -12.63294 -12.49952 -12.34842 -12.27595 -12.06777 -11.95971 -11.84112 -11.50351 -11.47681 -10.94762 -10.74454 -10.61803 -10.10408 -10.01013 -9.53052 -8.77207 -7.82490 -5.31665 0.12351 0.27554 1.45864 1.47280 1.57297 1.65053 2.18382 2.51325 2.56338 2.81200 3.29062 3.32059 3.57599 3.65928 3.75341 3.80255 3.88866 3.95771 3.99479 4.11339 4.25472 4.31887 4.33319 4.35400 4.47404 4.64505 4.76642 4.79703 4.81574 4.83526 4.86967 4.92239 4.96513 5.00005 5.06420 5.15932 5.16356 5.26774 5.28189 5.28684 5.29647 5.48356 5.52062 5.54751 5.63475 5.73537 5.93279 6.33794 6.61904 7.16523 7.30651 7.88217 8.31695 9.21301 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003036 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.045542 B = 9219.962436 C =11086.638987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.621 5.621 3 C -0.259 4.259 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.266 1.266 9 H -0.289 1.289 10 H -0.295 1.295 11 C 0.150 3.850 12 C -0.124 4.124 13 C 0.134 3.866 14 N -0.711 5.711 15 C 0.547 3.453 16 O -0.586 6.586 17 C -0.164 4.164 18 C -0.031 4.031 19 C -0.098 4.098 20 C -0.081 4.081 21 C -0.160 4.160 22 C 0.067 3.933 23 F -0.155 7.155 24 C -0.167 4.167 25 C -0.089 4.089 26 C -0.147 4.147 27 C -0.138 4.138 28 H -0.001 1.001 29 H 0.020 0.980 30 H 0.031 0.969 31 H 0.247 0.753 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.412 0.588 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -17.657 -20.042 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.344 5.344 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.250 4.250 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.190 1.190 9 H -0.216 1.216 10 H -0.222 1.222 11 C 0.023 3.977 12 C -0.165 4.165 13 C 0.010 3.990 14 N -0.363 5.363 15 C 0.335 3.665 16 O -0.466 6.466 17 C -0.167 4.167 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.098 4.098 21 C -0.178 4.178 22 C 0.048 3.952 23 F -0.133 7.133 24 C -0.186 4.186 25 C -0.107 4.107 26 C -0.185 4.185 27 C -0.175 4.175 28 H 0.017 0.983 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.176 0.824 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.214 -17.958 -19.270 28.251 hybrid contribution 0.381 1.725 0.793 1.937 sum 10.595 -16.232 -18.477 26.779 Atomic orbital electron populations 1.20534 0.82716 0.96115 0.97336 1.44147 1.02172 1.01641 1.86484 1.19567 0.98264 0.86769 1.34325 0.91073 1.25813 0.98408 1.01935 0.98856 1.70243 1.18916 1.27465 1.42278 0.85188 0.78163 0.80064 0.76955 1.19006 1.21614 1.22190 1.20765 0.95491 0.86929 0.94474 1.22122 0.99941 0.94701 0.99721 1.21098 0.99058 0.95836 0.83046 1.45917 1.57572 1.23843 1.08930 1.20080 0.76131 0.80012 0.90284 1.90677 1.49585 1.58481 1.47895 1.21406 1.05893 0.97138 0.92286 1.20203 0.91572 0.99601 0.95388 1.20164 0.96543 0.93983 0.99168 1.21217 0.91347 1.00230 0.97051 1.21387 1.01798 0.94567 1.00068 1.18074 0.84942 0.95286 0.96889 1.91456 1.55199 1.89253 1.77429 1.21327 0.93450 1.01281 1.02531 1.21143 0.97646 0.96164 0.95703 1.23154 1.01483 0.90367 1.03458 1.23220 0.91277 1.00078 1.02952 0.98301 0.96106 0.95085 0.94339 0.93462 0.94271 0.92077 0.91360 0.92311 0.93355 0.75114 0.88005 0.86584 0.82433 0.83399 0.85028 0.84096 0.85111 0.90284 0.89157 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.96 127.77 1.14 9.90 16 2 N -0.62 -30.82 2.93 -726.93 -2.13 -32.94 16 3 C -0.26 -14.11 9.67 84.04 0.81 -13.30 16 4 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 5 C -0.06 -3.11 5.15 84.86 0.44 -2.68 16 6 N -0.94 -55.99 10.55 21.65 0.23 -55.76 16 7 Si 0.97 45.01 29.56 68.60 2.03 47.04 16 8 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 C 0.15 5.91 5.65 86.38 0.49 6.40 16 12 C -0.12 -3.80 5.65 30.59 0.17 -3.63 16 13 C 0.13 3.69 5.68 86.38 0.49 4.18 16 14 N -0.71 -15.62 5.45 -463.07 -2.52 -18.14 16 15 C 0.55 13.07 5.63 87.66 0.49 13.56 16 16 O -0.59 -19.80 16.72 -3.02 -0.05 -19.85 16 17 C -0.16 -2.36 2.20 -52.93 -0.12 -2.48 16 18 C -0.03 -0.31 5.48 29.85 0.16 -0.14 16 19 C -0.10 -1.63 4.28 -19.86 -0.09 -1.72 16 20 C -0.08 -1.34 9.72 22.26 0.22 -1.13 16 21 C -0.16 -3.21 10.03 22.31 0.22 -2.99 16 22 C 0.07 1.67 7.30 22.38 0.16 1.83 16 23 F -0.15 -4.23 17.27 44.97 0.78 -3.46 16 24 C -0.17 -4.00 10.03 22.31 0.22 -3.78 16 25 C -0.09 -1.77 9.11 22.26 0.20 -1.57 16 26 C -0.15 -1.83 9.70 30.60 0.30 -1.53 16 27 C -0.14 -1.36 9.95 30.59 0.30 -1.05 16 28 H 0.00 -0.07 7.44 -2.39 -0.02 -0.09 16 29 H 0.02 1.09 7.16 -2.39 -0.02 1.07 16 30 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16 31 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 33 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.41 6.84 8.48 -92.70 -0.79 6.05 16 39 H 0.10 0.69 8.05 -2.39 -0.02 0.67 16 40 H 0.12 0.54 7.92 -2.39 -0.02 0.52 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.13 0.87 8.08 -2.38 -0.02 0.85 16 46 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 47 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -73.73 404.52 4.13 -69.60 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.16 Total: 13.64 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.63 Total: -0.12 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.42 Total: -106.85 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.73 4.13 -69.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712976217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.696 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds