Wall clock time and date at job start Tue Mar 31 2020 18:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47322 * 2 1 4 4 C 1.36933 * 119.99581 * 263.78544 * 3 2 1 5 5 H 1.08008 * 120.00009 * 142.61732 * 4 3 2 6 6 C 1.38807 * 120.00344 * 322.61065 * 4 3 2 7 7 N 1.31626 * 119.99988 * 157.38744 * 6 4 3 8 8 Si 1.86802 * 120.00000 * 337.39342 * 6 4 3 9 9 H 1.48506 * 109.47056 * 95.71305 * 8 6 4 10 10 H 1.48500 * 109.46842 * 215.71001 * 8 6 4 11 11 H 1.48493 * 109.46920 * 335.71056 * 8 6 4 12 12 C 1.46496 * 119.99964 * 83.78655 * 3 2 1 13 13 C 1.53002 * 109.47360 * 90.00391 * 12 3 2 14 14 C 1.53000 * 109.47045 * 179.97438 * 13 12 3 15 15 N 1.46496 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99901 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99657 * 180.02562 * 16 15 14 19 19 H 1.09001 * 110.27017 * 302.07184 * 18 16 15 20 20 C 1.54347 * 110.29967 * 180.02562 * 18 16 15 21 21 C 1.54344 * 102.39187 * 267.43005 * 20 18 16 22 22 C 1.51371 * 105.17462 * 333.64696 * 21 20 18 23 23 C 1.38458 * 130.37021 * 197.21025 * 22 21 20 24 24 C 1.38327 * 120.19884 * 179.97438 * 23 22 21 25 25 F 1.35098 * 120.06499 * 179.97438 * 24 23 22 26 26 C 1.38481 * 119.87609 * 359.97438 * 24 23 22 27 27 C 1.38057 * 119.91196 * 0.02562 * 26 24 23 28 28 C 1.38238 * 109.75689 * 17.18632 * 22 21 20 29 29 H 1.08999 * 109.46542 * 60.00223 * 1 2 3 30 30 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46864 * 300.00570 * 1 2 3 32 32 H 1.08995 * 109.47498 * 239.99367 * 2 1 3 33 33 H 1.09007 * 109.46874 * 119.99835 * 2 1 3 34 34 H 0.97003 * 119.99555 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47310 * 329.99830 * 12 3 2 36 36 H 1.09003 * 109.46800 * 209.99998 * 12 3 2 37 37 H 1.08999 * 109.46863 * 59.99574 * 13 12 3 38 38 H 1.08998 * 109.46395 * 299.99582 * 13 12 3 39 39 H 1.09001 * 109.47405 * 59.99574 * 14 13 12 40 40 H 1.09003 * 109.47020 * 299.99549 * 14 13 12 41 41 H 0.97005 * 120.00293 * 359.97438 * 15 14 13 42 42 H 1.09005 * 110.82239 * 149.20523 * 20 18 16 43 43 H 1.08996 * 110.82158 * 25.65602 * 20 18 16 44 44 H 1.09003 * 110.29804 * 214.72571 * 21 20 18 45 45 H 1.08993 * 110.30251 * 92.57790 * 21 20 18 46 46 H 1.08002 * 119.90254 * 359.97438 * 23 22 21 47 47 H 1.08007 * 120.04420 * 179.97438 * 26 24 23 48 48 H 1.07995 * 119.88019 * 179.73227 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3676 1.9838 -1.1790 5 1 2.1498 3.0300 -1.3360 6 6 3.0018 1.2503 -2.1722 7 7 2.9451 1.6517 -3.4245 8 14 3.9355 -0.3065 -1.7317 9 1 3.0563 -1.4857 -1.9367 10 1 5.1348 -0.4265 -2.5991 11 1 4.3573 -0.2448 -0.3093 12 6 2.1331 2.1176 1.2612 13 6 3.5251 1.8960 1.8565 14 6 3.6450 2.6656 3.1734 15 7 4.9776 2.4529 3.7436 16 6 5.3125 3.0381 4.9106 17 8 4.5104 3.7404 5.4889 18 6 6.6835 2.8197 5.4968 19 1 6.8619 1.7560 5.6540 20 6 6.8255 3.5885 6.8277 21 6 7.4309 4.9327 6.3707 22 6 8.1724 4.6180 5.0891 23 6 9.1457 5.3372 4.4165 24 6 9.6894 4.8443 3.2439 25 9 10.6386 5.5485 2.5895 26 6 9.2588 3.6275 2.7421 27 6 8.2883 2.9107 3.4130 28 6 7.7430 3.4038 4.5869 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3880 1.1388 -4.1186 35 1 1.3776 1.7599 1.9608 36 1 1.9823 3.1811 1.0760 37 1 4.2805 2.2537 1.1568 38 1 3.6758 0.8325 2.0417 39 1 2.8895 2.3083 3.8732 40 1 3.4944 3.7290 2.9877 41 1 5.6190 1.8909 3.2812 42 1 7.5031 3.0686 7.5050 43 1 5.8517 3.7404 7.2931 44 1 8.1216 5.3118 7.1240 45 1 6.6403 5.6588 6.1819 46 1 9.4815 6.2859 4.8084 47 1 9.6811 3.2402 1.8265 48 1 7.9498 1.9639 3.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713018599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:30 Heat of formation + Delta-G solvation = -46.583234 kcal Electronic energy + Delta-G solvation = -28503.794732 eV Core-core repulsion = 24473.119698 eV Total energy + Delta-G solvation = -4030.675034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.13187 -41.01987 -39.01170 -36.79116 -35.65009 -34.90225 -32.36046 -31.81191 -31.27658 -29.16244 -29.04068 -27.98989 -25.49933 -23.44436 -23.23816 -22.48593 -21.70555 -21.33308 -20.39503 -19.61208 -17.62022 -17.24168 -16.98075 -16.75771 -16.09691 -15.86675 -15.79098 -15.39035 -15.05201 -14.88727 -14.58788 -14.21013 -13.90079 -13.84817 -13.40604 -13.19907 -13.14998 -13.04080 -12.68011 -12.44643 -12.25554 -11.92760 -11.89930 -11.79454 -11.54739 -11.35223 -11.31764 -11.22735 -11.12708 -10.99166 -10.80007 -10.40671 -10.09315 -10.02798 -9.76277 -9.53043 -9.24727 -9.02060 -8.70530 -8.56185 -6.88517 -6.02934 -3.43794 0.77629 0.90558 2.54213 3.06854 3.26882 3.33488 3.41092 3.45044 3.77861 4.10827 4.15753 4.48040 4.51621 4.59310 4.67040 4.83133 4.89560 4.90638 4.96648 5.21405 5.24729 5.34402 5.38873 5.41287 5.54865 5.60261 5.67167 5.75687 5.77350 5.78069 5.87050 5.90643 5.97873 6.01183 6.06442 6.17744 6.22810 6.28873 6.33525 6.48891 6.52940 6.56334 6.69923 6.77484 6.86998 7.04908 7.47896 8.02978 8.16195 8.35617 8.96064 9.68128 10.09321 11.12897 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002977 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.470074 B = 9403.006755 C =11007.157043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.605 5.605 4 C -0.268 4.268 5 H 0.078 0.922 6 C 0.036 3.964 7 N -0.900 5.900 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.269 1.269 12 C 0.156 3.844 13 C -0.153 4.153 14 C 0.120 3.880 15 N -0.723 5.723 16 C 0.522 3.478 17 O -0.539 6.539 18 C -0.070 4.070 19 H 0.108 0.892 20 C -0.105 4.105 21 C -0.083 4.083 22 C -0.056 4.056 23 C -0.145 4.145 24 C 0.105 3.895 25 F -0.138 7.138 26 C -0.151 4.151 27 C -0.069 4.069 28 C -0.107 4.107 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.141 0.859 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.781 1.569 19.990 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.327 5.327 4 C -0.396 4.396 5 H 0.096 0.904 6 C -0.165 4.165 7 N -0.541 5.541 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.193 1.193 12 C 0.029 3.971 13 C -0.194 4.194 14 C -0.003 4.003 15 N -0.373 5.373 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.092 4.092 19 H 0.126 0.874 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.057 4.057 23 C -0.164 4.164 24 C 0.086 3.914 25 F -0.117 7.117 26 C -0.170 4.170 27 C -0.087 4.087 28 C -0.108 4.108 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.152 0.848 47 H 0.158 0.842 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.247 2.095 20.174 23.192 hybrid contribution 1.225 -1.144 -0.545 1.763 sum 12.471 0.951 19.628 23.275 Atomic orbital electron populations 1.22246 0.99002 0.99420 1.01661 1.21125 0.92627 0.86757 0.98965 1.44168 1.74436 1.11280 1.02799 1.18801 1.33316 0.97162 0.90357 0.90402 1.25486 0.97794 0.97938 0.95275 1.69883 1.44166 1.40689 0.99364 0.86916 0.79944 0.83924 0.78449 1.21532 1.23058 1.19328 1.20766 0.92049 0.96838 0.87465 1.22529 1.03067 0.99403 0.94380 1.21490 0.82715 1.00944 0.95192 1.46133 1.17054 1.50993 1.23135 1.20241 0.88466 0.79560 0.80994 1.90678 1.51870 1.38331 1.60700 1.20812 0.90804 1.02401 0.95136 0.87359 1.22253 1.02970 0.94356 0.94659 1.21116 0.98841 0.98854 0.93168 1.20439 0.94476 0.93886 0.96855 1.20529 0.98996 1.01640 0.95218 1.17534 0.89946 0.91544 0.92382 1.91512 1.61762 1.78091 1.80291 1.21059 0.99803 0.94347 1.01812 1.20493 0.95078 0.99850 0.93322 1.20250 0.97908 0.96453 0.96165 0.92251 0.94294 0.93807 0.92563 0.94918 0.92726 0.94022 0.92745 0.90965 0.92454 0.91781 0.91518 0.76725 0.90159 0.88362 0.90078 0.89164 0.84760 0.84160 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.23 37.16 0.38 -2.66 16 2 C 0.13 2.75 5.01 -4.04 -0.02 2.73 16 3 N -0.60 -13.72 2.08 -173.24 -0.36 -14.08 16 4 C -0.27 -7.25 9.91 -15.06 -0.15 -7.40 16 5 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 6 C 0.04 1.00 5.26 -17.43 -0.09 0.91 16 7 N -0.90 -27.04 13.97 55.49 0.78 -26.27 16 8 Si 0.88 21.47 25.05 -169.99 -4.26 17.21 16 9 H -0.29 -6.92 6.69 56.52 0.38 -6.54 16 10 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.16 2.89 5.69 -4.04 -0.02 2.87 16 13 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 14 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 15 N -0.72 -8.90 5.52 -60.29 -0.33 -9.23 16 16 C 0.52 6.56 7.15 -10.98 -0.08 6.48 16 17 O -0.54 -8.49 15.47 5.56 0.09 -8.41 16 18 C -0.07 -0.65 3.27 -91.88 -0.30 -0.95 16 19 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.10 -0.86 6.37 -25.32 -0.16 -1.02 16 21 C -0.08 -0.70 6.76 -26.85 -0.18 -0.88 16 22 C -0.06 -0.56 6.14 -104.21 -0.64 -1.19 16 23 C -0.15 -1.44 10.02 -39.47 -0.40 -1.83 16 24 C 0.11 1.14 7.30 -39.46 -0.29 0.85 16 25 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 26 C -0.15 -1.52 10.03 -39.56 -0.40 -1.91 16 27 C -0.07 -0.65 9.87 -39.55 -0.39 -1.04 16 28 C -0.11 -1.05 5.41 -104.19 -0.56 -1.62 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.06 1.31 3.60 -51.93 -0.19 1.12 16 33 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.40 4.19 8.10 -40.82 -0.33 3.86 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.92 6.97 -51.93 -0.36 0.56 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 48 H 0.13 0.99 7.86 -52.49 -0.41 0.58 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -31.99 392.75 -9.23 -41.23 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.63 Total: 2.84 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.47 Total: -7.66 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.08 Total: -49.58 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.26 Total: 17.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.99 -9.23 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713018599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.358 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds