Wall clock time and date at job start Tue Mar 31 2020 18:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47322 * 2 1 4 4 C 1.36933 * 119.99581 * 263.78544 * 3 2 1 5 5 H 1.08008 * 120.00009 * 142.61732 * 4 3 2 6 6 C 1.38807 * 120.00344 * 322.61065 * 4 3 2 7 7 N 1.31626 * 119.99988 * 157.38744 * 6 4 3 8 8 Si 1.86802 * 120.00000 * 337.39342 * 6 4 3 9 9 H 1.48506 * 109.47056 * 95.71305 * 8 6 4 10 10 H 1.48500 * 109.46842 * 215.71001 * 8 6 4 11 11 H 1.48493 * 109.46920 * 335.71056 * 8 6 4 12 12 C 1.46496 * 119.99964 * 83.78655 * 3 2 1 13 13 C 1.53002 * 109.47360 * 90.00391 * 12 3 2 14 14 C 1.53000 * 109.47045 * 179.97438 * 13 12 3 15 15 N 1.46496 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99901 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99657 * 180.02562 * 16 15 14 19 19 H 1.09001 * 110.27017 * 302.07184 * 18 16 15 20 20 C 1.54347 * 110.29967 * 180.02562 * 18 16 15 21 21 C 1.54344 * 102.39187 * 267.43005 * 20 18 16 22 22 C 1.51371 * 105.17462 * 333.64696 * 21 20 18 23 23 C 1.38458 * 130.37021 * 197.21025 * 22 21 20 24 24 C 1.38327 * 120.19884 * 179.97438 * 23 22 21 25 25 F 1.35098 * 120.06499 * 179.97438 * 24 23 22 26 26 C 1.38481 * 119.87609 * 359.97438 * 24 23 22 27 27 C 1.38057 * 119.91196 * 0.02562 * 26 24 23 28 28 C 1.38238 * 109.75689 * 17.18632 * 22 21 20 29 29 H 1.08999 * 109.46542 * 60.00223 * 1 2 3 30 30 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46864 * 300.00570 * 1 2 3 32 32 H 1.08995 * 109.47498 * 239.99367 * 2 1 3 33 33 H 1.09007 * 109.46874 * 119.99835 * 2 1 3 34 34 H 0.97003 * 119.99555 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47310 * 329.99830 * 12 3 2 36 36 H 1.09003 * 109.46800 * 209.99998 * 12 3 2 37 37 H 1.08999 * 109.46863 * 59.99574 * 13 12 3 38 38 H 1.08998 * 109.46395 * 299.99582 * 13 12 3 39 39 H 1.09001 * 109.47405 * 59.99574 * 14 13 12 40 40 H 1.09003 * 109.47020 * 299.99549 * 14 13 12 41 41 H 0.97005 * 120.00293 * 359.97438 * 15 14 13 42 42 H 1.09005 * 110.82239 * 149.20523 * 20 18 16 43 43 H 1.08996 * 110.82158 * 25.65602 * 20 18 16 44 44 H 1.09003 * 110.29804 * 214.72571 * 21 20 18 45 45 H 1.08993 * 110.30251 * 92.57790 * 21 20 18 46 46 H 1.08002 * 119.90254 * 359.97438 * 23 22 21 47 47 H 1.08007 * 120.04420 * 179.97438 * 26 24 23 48 48 H 1.07995 * 119.88019 * 179.73227 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3676 1.9838 -1.1790 5 1 2.1498 3.0300 -1.3360 6 6 3.0018 1.2503 -2.1722 7 7 2.9451 1.6517 -3.4245 8 14 3.9355 -0.3065 -1.7317 9 1 3.0563 -1.4857 -1.9367 10 1 5.1348 -0.4265 -2.5991 11 1 4.3573 -0.2448 -0.3093 12 6 2.1331 2.1176 1.2612 13 6 3.5251 1.8960 1.8565 14 6 3.6450 2.6656 3.1734 15 7 4.9776 2.4529 3.7436 16 6 5.3125 3.0381 4.9106 17 8 4.5104 3.7404 5.4889 18 6 6.6835 2.8197 5.4968 19 1 6.8619 1.7560 5.6540 20 6 6.8255 3.5885 6.8277 21 6 7.4309 4.9327 6.3707 22 6 8.1724 4.6180 5.0891 23 6 9.1457 5.3372 4.4165 24 6 9.6894 4.8443 3.2439 25 9 10.6386 5.5485 2.5895 26 6 9.2588 3.6275 2.7421 27 6 8.2883 2.9107 3.4130 28 6 7.7430 3.4038 4.5869 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3880 1.1388 -4.1186 35 1 1.3776 1.7599 1.9608 36 1 1.9823 3.1811 1.0760 37 1 4.2805 2.2537 1.1568 38 1 3.6758 0.8325 2.0417 39 1 2.8895 2.3083 3.8732 40 1 3.4944 3.7290 2.9877 41 1 5.6190 1.8909 3.2812 42 1 7.5031 3.0686 7.5050 43 1 5.8517 3.7404 7.2931 44 1 8.1216 5.3118 7.1240 45 1 6.6403 5.6588 6.1819 46 1 9.4815 6.2859 4.8084 47 1 9.6811 3.2402 1.8265 48 1 7.9498 1.9639 3.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713018599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:29 Heat of formation + Delta-G solvation = -64.721161 kcal Electronic energy + Delta-G solvation = -28504.581251 eV Core-core repulsion = 24473.119698 eV Total energy + Delta-G solvation = -4031.461554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.97162 -41.82683 -39.94158 -38.39527 -36.59680 -35.96616 -33.99589 -33.18559 -32.39937 -30.65496 -29.78434 -28.91347 -27.01199 -25.01187 -24.08163 -23.70776 -22.74776 -22.10071 -21.79909 -20.74439 -18.70195 -18.48953 -18.05084 -17.75684 -17.30547 -16.94941 -16.90555 -16.65645 -16.23848 -15.99819 -15.47804 -15.41079 -15.09293 -14.95048 -14.71572 -14.60849 -14.27398 -14.12791 -13.92096 -13.56209 -13.40089 -13.23754 -13.01842 -12.94020 -12.81248 -12.61242 -12.52817 -12.47357 -12.18593 -12.09624 -11.95731 -11.83364 -11.70949 -11.49581 -11.35185 -11.07671 -10.62289 -10.09017 -9.97219 -9.49261 -8.76919 -8.17871 -5.55604 0.00561 0.17761 1.33509 1.42338 1.54513 1.58908 2.15915 2.44789 2.53307 3.04408 3.06703 3.37463 3.39780 3.44309 3.74618 3.90086 3.97028 4.11543 4.12298 4.20635 4.22290 4.31823 4.34950 4.45919 4.59114 4.64736 4.64954 4.70299 4.70806 4.75179 4.84329 4.89801 4.94692 5.00282 5.01831 5.06873 5.12768 5.18132 5.19045 5.29666 5.30300 5.41142 5.45066 5.48147 5.52549 5.82593 5.97338 6.19525 6.52873 7.02305 7.20835 7.66838 8.08067 9.02377 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002977 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.470074 B = 9403.006755 C =11007.157043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 N -0.616 5.616 4 C -0.256 4.256 5 H 0.035 0.965 6 C -0.023 4.023 7 N -0.954 5.954 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.313 1.313 11 H -0.243 1.243 12 C 0.151 3.849 13 C -0.136 4.136 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.520 3.480 17 O -0.574 6.574 18 C -0.064 4.064 19 H 0.138 0.862 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.065 4.065 23 C -0.151 4.151 24 C 0.086 3.914 25 F -0.147 7.147 26 C -0.161 4.161 27 C -0.072 4.072 28 C -0.113 4.113 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.410 0.590 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -0.707 22.834 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.003 4.003 3 N -0.339 5.339 4 C -0.386 4.386 5 H 0.053 0.947 6 C -0.219 4.219 7 N -0.598 5.598 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.242 1.242 11 H -0.167 1.167 12 C 0.026 3.974 13 C -0.176 4.176 14 C 0.007 3.993 15 N -0.370 5.370 16 C 0.307 3.693 17 O -0.454 6.454 18 C -0.085 4.085 19 H 0.156 0.844 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.066 4.066 23 C -0.170 4.170 24 C 0.067 3.933 25 F -0.126 7.126 26 C -0.179 4.179 27 C -0.089 4.089 28 C -0.113 4.113 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.164 0.836 47 H 0.168 0.832 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.927 -0.198 23.066 25.968 hybrid contribution 0.915 -0.331 -1.404 1.708 sum 12.842 -0.529 21.662 25.188 Atomic orbital electron populations 1.22145 0.97251 1.01151 1.01029 1.21281 0.94142 0.85517 0.99322 1.44254 1.74855 1.12139 1.02664 1.18640 1.32189 0.95601 0.92151 0.94724 1.26125 0.98948 1.01953 0.94844 1.70029 1.46067 1.43067 1.00633 0.85827 0.77837 0.79921 0.79096 1.20649 1.24175 1.16665 1.20878 0.94394 0.95788 0.86373 1.22236 1.00553 1.00167 0.94684 1.21202 0.84105 0.99660 0.94296 1.46050 1.16567 1.51135 1.23229 1.20818 0.89418 0.78548 0.80493 1.90669 1.53287 1.39780 1.61638 1.20853 0.88182 1.04343 0.95073 0.84419 1.22293 1.02938 0.94221 0.94479 1.21145 0.98677 0.98911 0.93205 1.20674 0.94446 0.94016 0.97428 1.20711 0.99022 1.02232 0.95019 1.17797 0.90384 0.92149 0.93017 1.91484 1.62203 1.78376 1.80550 1.21280 1.00085 0.94223 1.02334 1.20751 0.94593 1.00546 0.93059 1.20404 0.97990 0.96539 0.96391 0.95224 0.91407 0.92075 0.94854 0.91620 0.92977 0.91221 0.94138 0.93126 0.91336 0.90993 0.93021 0.75448 0.87422 0.89595 0.87918 0.90737 0.83557 0.83216 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 10.23 71.98 0.74 -4.66 16 2 C 0.12 4.79 5.01 86.38 0.43 5.22 16 3 N -0.62 -27.23 2.08 -702.00 -1.46 -28.69 16 4 C -0.26 -14.15 9.91 84.03 0.83 -13.32 16 5 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 6 C -0.02 -1.29 5.26 84.86 0.45 -0.85 16 7 N -0.95 -59.30 13.97 21.65 0.30 -58.99 16 8 Si 0.94 44.15 25.05 68.60 1.72 45.87 16 9 H -0.28 -12.58 6.69 99.48 0.67 -11.91 16 10 H -0.31 -15.02 7.11 99.48 0.71 -14.32 16 11 H -0.24 -10.22 7.11 99.48 0.71 -9.52 16 12 C 0.15 5.37 5.69 86.38 0.49 5.86 16 13 C -0.14 -4.11 5.65 30.60 0.17 -3.94 16 14 C 0.13 3.44 5.67 86.38 0.49 3.93 16 15 N -0.72 -15.93 5.52 -463.06 -2.56 -18.48 16 16 C 0.52 11.97 7.15 87.66 0.63 12.60 16 17 O -0.57 -17.41 15.47 -3.03 -0.05 -17.46 16 18 C -0.06 -0.99 3.27 -11.61 -0.04 -1.03 16 19 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 20 C -0.10 -1.40 6.37 31.51 0.20 -1.20 16 21 C -0.08 -1.24 6.76 30.52 0.21 -1.04 16 22 C -0.07 -1.18 6.14 -19.60 -0.12 -1.30 16 23 C -0.15 -2.86 10.02 22.34 0.22 -2.64 16 24 C 0.09 1.80 7.30 22.35 0.16 1.96 16 25 F -0.15 -3.40 17.27 44.97 0.78 -2.62 16 26 C -0.16 -3.02 10.03 22.28 0.22 -2.80 16 27 C -0.07 -1.19 9.87 22.29 0.22 -0.97 16 28 C -0.11 -1.95 5.41 -19.58 -0.11 -2.06 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.87 8.12 -2.39 -0.02 1.86 16 32 H 0.03 1.47 3.60 -2.39 -0.01 1.46 16 33 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 36 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 7.31 8.10 -92.70 -0.75 6.56 16 42 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.09 1.45 6.97 -2.39 -0.02 1.43 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 48 H 0.15 1.81 7.86 -2.91 -0.02 1.79 16 Total: -1.00 -71.55 392.75 4.10 -67.45 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.17 Total: 19.16 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.20 Total: -6.24 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.72 Total: -106.17 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.72 Total: 45.87 kcal Total: -71.55 4.10 -67.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713018599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.730 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds