Wall clock time and date at job start Tue Mar 31 2020 18:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00528 * 2 1 4 4 H 1.08000 * 120.00450 * 199.52903 * 3 2 1 5 5 C 1.38819 * 119.99580 * 19.52811 * 3 2 1 6 6 N 1.31619 * 119.99928 * 17.02408 * 5 3 2 7 7 Si 1.86805 * 119.99735 * 197.02593 * 5 3 2 8 8 H 1.48497 * 109.46976 * 94.98695 * 7 5 3 9 9 H 1.48497 * 109.46661 * 214.98759 * 7 5 3 10 10 H 1.48499 * 109.47017 * 334.98625 * 7 5 3 11 11 C 1.46504 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46608 * 269.99591 * 11 2 1 13 13 H 1.09001 * 109.50030 * 305.06195 * 12 11 2 14 14 C 1.53046 * 109.49883 * 185.00147 * 12 11 2 15 15 C 1.53035 * 109.53959 * 178.68656 * 14 12 11 16 16 C 1.53185 * 109.31710 * 61.36435 * 15 14 12 17 17 N 1.46934 * 108.77381 * 305.36453 * 16 15 14 18 18 C 1.34776 * 120.63035 * 233.60608 * 17 16 15 19 19 O 1.21553 * 119.99706 * 174.21100 * 18 17 16 20 20 C 1.47845 * 119.99811 * 354.21911 * 18 17 16 21 21 C 1.39580 * 120.14321 * 324.54728 * 20 18 17 22 22 C 1.37955 * 119.85288 * 179.79434 * 21 20 18 23 23 C 1.38364 * 120.14310 * 0.49569 * 22 21 20 24 24 C 1.50702 * 119.85505 * 179.71964 * 23 22 21 25 25 F 1.39898 * 109.47096 * 270.02463 * 24 23 22 26 26 C 1.38354 * 120.29432 * 359.74034 * 23 22 21 27 27 C 1.37962 * 120.14361 * 0.02562 * 26 23 22 28 28 C 1.46929 * 118.73755 * 53.60841 * 17 16 15 29 29 H 1.08997 * 109.46675 * 273.44786 * 1 2 3 30 30 H 1.09005 * 109.46781 * 33.43880 * 1 2 3 31 31 H 1.08995 * 109.47475 * 153.44210 * 1 2 3 32 32 H 0.97003 * 119.99489 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47188 * 149.99985 * 11 2 1 34 34 H 1.08997 * 109.47329 * 29.99064 * 11 2 1 35 35 H 1.08998 * 109.45615 * 298.70551 * 14 12 11 36 36 H 1.08997 * 109.45895 * 58.66003 * 14 12 11 37 37 H 1.09001 * 109.49722 * 181.32094 * 15 14 12 38 38 H 1.08997 * 109.49686 * 301.37375 * 15 14 12 39 39 H 1.09000 * 109.58709 * 65.15023 * 16 15 14 40 40 H 1.09001 * 109.58851 * 185.43523 * 16 15 14 41 41 H 1.08001 * 120.07508 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.93243 * 180.23518 * 22 21 20 43 43 H 1.09003 * 109.46828 * 30.02017 * 24 23 22 44 44 H 1.08998 * 109.47604 * 150.01999 * 24 23 22 45 45 H 1.08000 * 119.93217 * 180.02562 * 26 23 22 46 46 H 1.08006 * 120.07307 * 179.97438 * 27 26 23 47 47 H 1.08996 * 109.58215 * 186.60723 * 28 17 16 48 48 H 1.08999 * 109.58560 * 66.17907 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1832 1.2127 -0.3126 5 6 1.5156 2.3535 0.4019 6 7 0.3948 2.2906 1.0891 7 14 2.2529 4.0139 -0.0327 8 1 1.6268 4.5225 -1.2795 9 1 2.0018 4.9718 1.0738 10 1 3.7164 3.8672 -0.2378 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 2.9632 -0.9137 1.9818 14 6 3.3239 -2.9690 1.4439 15 6 3.6068 -3.3933 2.8868 16 6 2.2843 -3.7202 3.5874 17 7 1.3853 -2.5646 3.4634 18 6 0.8177 -2.0159 4.5557 19 8 0.1611 -0.9981 4.4531 20 6 0.9938 -2.6518 5.8787 21 6 1.0468 -4.0424 5.9866 22 6 1.2156 -4.6293 7.2236 23 6 1.3221 -3.8429 8.3570 24 6 1.5000 -4.4912 9.7058 25 9 0.2456 -4.7346 10.2753 26 6 1.2655 -2.4641 8.2577 27 6 1.1018 -1.8644 7.0261 28 6 1.1168 -2.0187 2.1260 29 1 -0.3632 0.0618 1.0258 30 1 -0.3633 0.8576 -0.5663 31 1 -0.3634 -0.9192 -0.4594 32 1 -0.0485 3.1066 1.3695 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5146 35 1 2.8023 -3.7730 0.9246 36 1 4.2652 -2.7596 0.9358 37 1 4.2468 -4.2756 2.8878 38 1 4.1070 -2.5807 3.4135 39 1 1.8272 -4.5909 3.1172 40 1 2.4707 -3.9294 4.6407 41 1 0.9595 -4.6575 5.1031 42 1 1.2606 -5.7051 7.3080 43 1 2.0347 -5.4337 9.5882 44 1 2.0714 -3.8279 10.3552 45 1 1.3496 -1.8559 9.1462 46 1 1.0573 -0.7879 6.9499 47 1 0.5327 -1.1029 2.2157 48 1 0.5645 -2.7507 1.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713137274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:11 Heat of formation + Delta-G solvation = -30.242625 kcal Electronic energy + Delta-G solvation = -29306.059144 eV Core-core repulsion = 25276.092692 eV Total energy + Delta-G solvation = -4029.966452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -47.95851 -40.54450 -38.80714 -37.32572 -35.49848 -33.33603 -32.29295 -31.59164 -31.28051 -29.95441 -27.48116 -26.19445 -25.48862 -24.99659 -23.14380 -22.29174 -22.26764 -20.82096 -19.89157 -19.14952 -17.31343 -16.81342 -16.59951 -16.41873 -16.20568 -15.78015 -15.10812 -14.81036 -14.76718 -14.67180 -14.36519 -14.06502 -13.84500 -13.68437 -13.36705 -13.15286 -13.05343 -12.83060 -12.64703 -12.37575 -12.18064 -11.72148 -11.60702 -11.36594 -11.23744 -11.02050 -10.95229 -10.83440 -10.67457 -10.59377 -10.42024 -10.06637 -9.98561 -9.83040 -9.64329 -9.56858 -9.20067 -9.05432 -8.44185 -8.29595 -6.68809 -5.62719 -3.04619 0.64796 1.10257 2.84978 3.17390 3.44254 3.50398 3.52579 3.61138 4.10041 4.30777 4.51712 4.52490 4.58345 4.69467 4.76017 4.87921 5.02362 5.11545 5.15351 5.25394 5.28951 5.39402 5.48924 5.49354 5.54086 5.64294 5.72205 5.76619 5.83569 5.96413 5.97971 6.13108 6.14768 6.18723 6.21769 6.24188 6.34394 6.47668 6.58371 6.66125 6.78144 6.86091 6.93472 7.12495 7.44523 7.66466 7.81891 7.91278 8.43082 8.47770 9.32235 9.97110 10.44896 11.42640 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002905 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.927463 B = 9635.910538 C =10614.841353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.898 5.898 7 Si 0.899 3.101 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.281 1.281 11 C 0.160 3.840 12 C -0.121 4.121 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.133 4.133 16 C 0.094 3.906 17 N -0.603 5.603 18 C 0.547 3.453 19 O -0.514 6.514 20 C -0.108 4.108 21 C -0.096 4.096 22 C -0.107 4.107 23 C -0.124 4.124 24 C 0.106 3.894 25 F -0.211 7.211 26 C -0.103 4.103 27 C -0.067 4.067 28 C 0.121 3.879 29 H 0.032 0.968 30 H 0.044 0.956 31 H -0.005 1.005 32 H 0.252 0.748 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.114 0.886 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -18.797 13.029 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.542 5.542 7 Si 0.730 3.270 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.144 4.144 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.029 4.029 17 N -0.336 5.336 18 C 0.334 3.666 19 O -0.390 6.390 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.124 4.124 24 C 0.051 3.949 25 F -0.192 7.192 26 C -0.121 4.121 27 C -0.086 4.086 28 C 0.000 4.000 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.149 0.851 46 H 0.155 0.845 47 H 0.132 0.868 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.713 -18.091 13.016 22.779 hybrid contribution 0.381 0.917 -0.095 0.998 sum 5.094 -17.173 12.921 22.087 Atomic orbital electron populations 1.20867 0.82648 0.95644 0.99303 1.43982 1.01814 1.00685 1.85820 1.19155 0.96502 0.84813 1.38159 0.91446 1.24938 0.98042 0.98135 0.98546 1.70116 1.19367 1.26558 1.38170 0.86313 0.78502 0.84617 0.77577 1.21662 1.21922 1.20613 1.20818 0.95910 0.88176 0.91970 1.22279 0.94850 0.96251 1.00974 0.90617 1.21584 1.00172 0.98264 0.95274 1.21914 0.96434 1.01450 0.97379 1.22170 0.90610 0.88363 1.01736 1.48076 1.46212 1.31926 1.07388 1.18338 0.80391 0.84096 0.83732 1.90898 1.39858 1.22737 1.85481 1.20177 1.02606 0.94033 0.94282 1.21521 0.98023 0.93730 0.98172 1.20961 1.00005 0.99849 0.91653 1.20377 1.02275 0.94397 0.95387 1.20822 0.81708 1.01424 0.90916 1.92822 1.44493 1.95904 1.85973 1.21021 0.99487 0.93803 0.97789 1.21301 0.95566 1.00860 0.90860 1.21886 0.98137 1.00307 0.79699 0.95018 0.93712 0.98608 0.93806 0.93519 0.94499 0.92388 0.91968 0.91324 0.91626 0.91571 0.89163 0.84490 0.85225 0.89749 0.89730 0.85122 0.84469 0.86788 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 7.98 59.85 0.48 4.50 16 2 N -0.60 -15.15 2.77 -181.12 -0.50 -15.65 16 3 C -0.26 -7.16 9.67 -15.06 -0.15 -7.31 16 4 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 5 C 0.00 0.06 5.01 -17.43 -0.09 -0.02 16 6 N -0.90 -27.16 10.75 55.49 0.60 -26.57 16 7 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 8 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.16 3.20 5.18 -4.04 -0.02 3.18 16 12 C -0.12 -2.21 2.54 -90.50 -0.23 -2.44 16 13 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 14 C -0.11 -1.54 5.17 -26.69 -0.14 -1.68 16 15 C -0.13 -1.54 6.08 -26.62 -0.16 -1.70 16 16 C 0.09 1.08 4.77 -3.71 -0.02 1.06 16 17 N -0.60 -9.72 2.97 -173.88 -0.52 -10.23 16 18 C 0.55 9.82 7.38 -12.33 -0.09 9.73 16 19 O -0.51 -11.90 16.25 5.32 0.09 -11.81 16 20 C -0.11 -1.49 5.29 -104.97 -0.56 -2.05 16 21 C -0.10 -1.01 7.36 -39.18 -0.29 -1.30 16 22 C -0.11 -0.93 9.68 -39.64 -0.38 -1.32 16 23 C -0.12 -1.11 5.60 -104.53 -0.59 -1.70 16 24 C 0.11 0.71 7.67 36.01 0.28 0.98 16 25 F -0.21 -2.07 17.34 2.25 0.04 -2.03 16 26 C -0.10 -1.04 9.68 -39.64 -0.38 -1.42 16 27 C -0.07 -0.87 9.61 -39.19 -0.38 -1.25 16 28 C 0.12 2.25 5.11 -3.71 -0.02 2.23 16 29 H 0.03 0.88 6.03 -51.93 -0.31 0.56 16 30 H 0.04 1.22 7.10 -51.93 -0.37 0.85 16 31 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 32 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.09 0.90 4.47 -51.93 -0.23 0.66 16 41 H 0.14 1.22 6.05 -52.49 -0.32 0.91 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.14 1.88 8.00 -52.48 -0.42 1.46 16 47 H 0.11 2.73 4.78 -51.93 -0.25 2.48 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -34.35 380.34 -9.65 -44.00 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.32 Total: -0.43 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.73 Total: -0.49 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.42 Total: -52.45 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.35 -9.65 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713137274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.757 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds