Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00528 * 2 1 4 4 H 1.08000 * 120.00450 * 199.52903 * 3 2 1 5 5 C 1.38819 * 119.99580 * 19.52811 * 3 2 1 6 6 N 1.31619 * 119.99928 * 17.02408 * 5 3 2 7 7 Si 1.86805 * 119.99735 * 197.02593 * 5 3 2 8 8 H 1.48497 * 109.46976 * 94.98695 * 7 5 3 9 9 H 1.48497 * 109.46661 * 214.98759 * 7 5 3 10 10 H 1.48499 * 109.47017 * 334.98625 * 7 5 3 11 11 C 1.46504 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46608 * 269.99591 * 11 2 1 13 13 H 1.09001 * 109.50030 * 305.06195 * 12 11 2 14 14 C 1.53046 * 109.49883 * 185.00147 * 12 11 2 15 15 C 1.53035 * 109.53959 * 178.68656 * 14 12 11 16 16 C 1.53185 * 109.31710 * 61.36435 * 15 14 12 17 17 N 1.46934 * 108.77381 * 305.36453 * 16 15 14 18 18 C 1.34776 * 120.63035 * 233.60608 * 17 16 15 19 19 O 1.21553 * 119.99706 * 174.21100 * 18 17 16 20 20 C 1.47845 * 119.99811 * 354.21911 * 18 17 16 21 21 C 1.39580 * 120.14321 * 324.54728 * 20 18 17 22 22 C 1.37955 * 119.85288 * 179.79434 * 21 20 18 23 23 C 1.38364 * 120.14310 * 0.49569 * 22 21 20 24 24 C 1.50702 * 119.85505 * 179.71964 * 23 22 21 25 25 F 1.39898 * 109.47096 * 270.02463 * 24 23 22 26 26 C 1.38354 * 120.29432 * 359.74034 * 23 22 21 27 27 C 1.37962 * 120.14361 * 0.02562 * 26 23 22 28 28 C 1.46929 * 118.73755 * 53.60841 * 17 16 15 29 29 H 1.08997 * 109.46675 * 273.44786 * 1 2 3 30 30 H 1.09005 * 109.46781 * 33.43880 * 1 2 3 31 31 H 1.08995 * 109.47475 * 153.44210 * 1 2 3 32 32 H 0.97003 * 119.99489 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47188 * 149.99985 * 11 2 1 34 34 H 1.08997 * 109.47329 * 29.99064 * 11 2 1 35 35 H 1.08998 * 109.45615 * 298.70551 * 14 12 11 36 36 H 1.08997 * 109.45895 * 58.66003 * 14 12 11 37 37 H 1.09001 * 109.49722 * 181.32094 * 15 14 12 38 38 H 1.08997 * 109.49686 * 301.37375 * 15 14 12 39 39 H 1.09000 * 109.58709 * 65.15023 * 16 15 14 40 40 H 1.09001 * 109.58851 * 185.43523 * 16 15 14 41 41 H 1.08001 * 120.07508 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.93243 * 180.23518 * 22 21 20 43 43 H 1.09003 * 109.46828 * 30.02017 * 24 23 22 44 44 H 1.08998 * 109.47604 * 150.01999 * 24 23 22 45 45 H 1.08000 * 119.93217 * 180.02562 * 26 23 22 46 46 H 1.08006 * 120.07307 * 179.97438 * 27 26 23 47 47 H 1.08996 * 109.58215 * 186.60723 * 28 17 16 48 48 H 1.08999 * 109.58560 * 66.17907 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1832 1.2127 -0.3126 5 6 1.5156 2.3535 0.4019 6 7 0.3948 2.2906 1.0891 7 14 2.2529 4.0139 -0.0327 8 1 1.6268 4.5225 -1.2795 9 1 2.0018 4.9718 1.0738 10 1 3.7164 3.8672 -0.2378 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7110 1.4418 13 1 2.9632 -0.9137 1.9818 14 6 3.3239 -2.9690 1.4439 15 6 3.6068 -3.3933 2.8868 16 6 2.2843 -3.7202 3.5874 17 7 1.3853 -2.5646 3.4634 18 6 0.8177 -2.0159 4.5557 19 8 0.1611 -0.9981 4.4531 20 6 0.9938 -2.6518 5.8787 21 6 1.0468 -4.0424 5.9866 22 6 1.2156 -4.6293 7.2236 23 6 1.3221 -3.8429 8.3570 24 6 1.5000 -4.4912 9.7058 25 9 0.2456 -4.7346 10.2753 26 6 1.2655 -2.4641 8.2577 27 6 1.1018 -1.8644 7.0261 28 6 1.1168 -2.0187 2.1260 29 1 -0.3632 0.0618 1.0258 30 1 -0.3633 0.8576 -0.5663 31 1 -0.3634 -0.9192 -0.4594 32 1 -0.0485 3.1066 1.3695 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5146 35 1 2.8023 -3.7730 0.9246 36 1 4.2652 -2.7596 0.9358 37 1 4.2468 -4.2756 2.8878 38 1 4.1070 -2.5807 3.4135 39 1 1.8272 -4.5909 3.1172 40 1 2.4707 -3.9294 4.6407 41 1 0.9595 -4.6575 5.1031 42 1 1.2606 -5.7051 7.3080 43 1 2.0347 -5.4337 9.5882 44 1 2.0714 -3.8279 10.3552 45 1 1.3496 -1.8559 9.1462 46 1 1.0573 -0.7879 6.9499 47 1 0.5327 -1.1029 2.2157 48 1 0.5645 -2.7507 1.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713137274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = -51.057733 kcal Electronic energy + Delta-G solvation = -29306.961755 eV Core-core repulsion = 25276.092692 eV Total energy + Delta-G solvation = -4030.869063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -48.57347 -41.71378 -39.83449 -38.76469 -37.26122 -34.74904 -33.36709 -33.11344 -32.19727 -31.53627 -28.58664 -27.94762 -27.17636 -26.17632 -24.24001 -23.54459 -23.24032 -22.29538 -21.30180 -20.35317 -18.73008 -18.41410 -17.67380 -17.26740 -16.90317 -16.83803 -16.73933 -16.28613 -15.92924 -15.65943 -15.60884 -15.37375 -15.09115 -15.06478 -14.67819 -14.46327 -14.22535 -14.04240 -13.91933 -13.74038 -13.57482 -13.33630 -12.82221 -12.72806 -12.53442 -12.37253 -12.31085 -12.10809 -12.08898 -12.03303 -11.86570 -11.78328 -11.65366 -11.53457 -11.26473 -10.95714 -10.60587 -10.06744 -9.94642 -9.60994 -8.79025 -7.82666 -5.26220 -0.25775 0.29312 1.41299 1.42805 1.52151 1.64055 1.96983 2.50023 2.64338 3.29654 3.35453 3.56744 3.66351 3.70382 3.85591 3.95033 3.99788 4.10146 4.12540 4.14749 4.17447 4.34445 4.37874 4.50908 4.53089 4.61822 4.65178 4.73079 4.81347 4.82716 4.88026 4.90872 4.95068 4.96780 5.04061 5.11907 5.17819 5.24540 5.30054 5.32317 5.37325 5.45217 5.54456 5.59293 5.64426 5.75595 5.79519 6.31338 6.39492 7.10093 7.14262 7.89758 8.31644 9.21066 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002905 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.927463 B = 9635.910538 C =10614.841353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.617 5.617 3 C -0.258 4.258 4 H 0.073 0.927 5 C -0.061 4.061 6 N -0.935 5.935 7 Si 0.965 3.035 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.265 1.265 11 C 0.154 3.846 12 C -0.109 4.109 13 H 0.024 0.976 14 C -0.106 4.106 15 C -0.129 4.129 16 C 0.087 3.913 17 N -0.600 5.600 18 C 0.537 3.463 19 O -0.590 6.590 20 C -0.132 4.132 21 C -0.090 4.090 22 C -0.095 4.095 23 C -0.118 4.118 24 C 0.102 3.898 25 F -0.229 7.229 26 C -0.103 4.103 27 C -0.092 4.092 28 C 0.126 3.874 29 H -0.004 1.004 30 H 0.014 0.986 31 H 0.032 0.968 32 H 0.243 0.757 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.171 0.829 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.150 0.850 46 H 0.109 0.891 47 H 0.052 0.948 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -23.548 13.683 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.339 5.339 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.255 4.255 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.189 1.189 11 C 0.027 3.973 12 C -0.131 4.131 13 H 0.042 0.958 14 C -0.144 4.144 15 C -0.167 4.167 16 C -0.033 4.033 17 N -0.331 5.331 18 C 0.327 3.673 19 O -0.471 6.471 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.118 4.118 24 C 0.048 3.952 25 F -0.210 7.210 26 C -0.121 4.121 27 C -0.111 4.111 28 C 0.004 3.996 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.176 0.824 42 H 0.189 0.811 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.167 0.833 46 H 0.127 0.873 47 H 0.070 0.930 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.159 -22.920 13.651 27.621 hybrid contribution -0.312 2.283 -0.258 2.318 sum 6.847 -20.638 13.393 25.538 Atomic orbital electron populations 1.20532 0.83124 0.95926 0.97004 1.44228 1.01933 1.01985 1.85786 1.19522 0.96700 0.86067 1.36511 0.90954 1.25763 0.98859 1.01762 0.99154 1.70335 1.21171 1.26607 1.40092 0.85270 0.78496 0.80073 0.76792 1.21170 1.22905 1.18938 1.21078 0.96096 0.86641 0.93445 1.22014 0.95061 0.97445 0.98556 0.95753 1.21539 0.99580 0.96012 0.97317 1.21929 0.96866 1.02506 0.95444 1.22610 0.89799 0.87256 1.03660 1.48198 1.46279 1.32771 1.05899 1.19150 0.79236 0.83323 0.85627 1.90850 1.43322 1.26244 1.86720 1.19939 1.05962 0.95777 0.91838 1.21711 0.97154 0.91822 1.00079 1.21424 0.97672 1.01795 0.90379 1.20785 1.00155 0.93729 0.97154 1.21118 0.81091 1.03453 0.89515 1.92791 1.46015 1.96063 1.86155 1.21232 0.98804 0.95097 0.96966 1.21246 0.97692 0.99845 0.92355 1.21562 0.97846 0.98496 0.81677 0.98567 0.96723 0.94965 0.94817 0.92743 0.91646 0.89573 0.91064 0.86805 0.93942 0.88021 0.87180 0.82377 0.81149 0.86345 0.87695 0.83257 0.87299 0.92977 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.51 7.98 127.77 1.02 10.53 16 2 N -0.62 -32.16 2.77 -726.93 -2.01 -34.17 16 3 C -0.26 -14.87 9.67 84.04 0.81 -14.06 16 4 H 0.07 4.02 7.87 -2.91 -0.02 4.00 16 5 C -0.06 -3.64 5.01 84.86 0.43 -3.21 16 6 N -0.94 -60.62 10.75 21.65 0.23 -60.38 16 7 Si 0.96 48.20 29.59 68.60 2.03 50.23 16 8 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 9 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 10 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 11 C 0.15 6.10 5.18 86.38 0.45 6.55 16 12 C -0.11 -3.99 2.54 -10.71 -0.03 -4.02 16 13 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 14 C -0.11 -2.53 5.17 30.62 0.16 -2.37 16 15 C -0.13 -2.54 6.08 30.67 0.19 -2.35 16 16 C 0.09 1.72 4.77 86.36 0.41 2.14 16 17 N -0.60 -19.69 2.97 -822.30 -2.44 -22.14 16 18 C 0.54 20.75 7.38 86.79 0.64 21.39 16 19 O -0.59 -30.70 16.25 -3.88 -0.06 -30.76 16 20 C -0.13 -3.76 5.29 -20.09 -0.11 -3.87 16 21 C -0.09 -1.64 7.36 22.53 0.17 -1.48 16 22 C -0.10 -1.25 9.68 22.23 0.22 -1.04 16 23 C -0.12 -1.72 5.60 -19.81 -0.11 -1.83 16 24 C 0.10 0.92 7.67 71.24 0.55 1.47 16 25 F -0.23 -3.76 17.34 44.97 0.78 -2.98 16 26 C -0.10 -2.00 9.68 22.23 0.22 -1.78 16 27 C -0.09 -2.56 9.61 22.53 0.22 -2.34 16 28 C 0.13 4.90 5.11 86.36 0.44 5.34 16 29 H 0.00 -0.23 6.03 -2.39 -0.01 -0.25 16 30 H 0.01 0.82 7.10 -2.38 -0.02 0.80 16 31 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 32 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 34 H 0.07 2.23 7.87 -2.39 -0.02 2.21 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 40 H 0.11 1.79 4.47 -2.39 -0.01 1.78 16 41 H 0.16 2.16 6.05 -2.91 -0.02 2.15 16 42 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.12 0.33 8.08 -2.39 -0.02 0.31 16 44 H 0.10 0.55 8.08 -2.39 -0.02 0.53 16 45 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.11 3.49 8.00 -2.91 -0.02 3.47 16 47 H 0.05 2.73 4.78 -2.39 -0.01 2.71 16 48 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -86.36 380.34 5.13 -81.22 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.95 Total: 9.93 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.66 Total: 9.05 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.23 Total: -116.70 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.06 Total: -30.76 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -86.36 5.13 -81.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713137274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.167 kcal (2) G-P(sol) polarization free energy of solvation -86.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds