Wall clock time and date at job start Tue Mar 31 2020 17:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 N 1.46502 * 109.47298 * 119.99272 * 2 1 3 5 5 C 1.34773 * 120.00190 * 275.00482 * 4 2 1 6 6 O 1.21276 * 119.99978 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.50704 * 109.47139 * 180.02562 * 7 5 4 9 9 C 1.38266 * 119.98065 * 269.97384 * 8 7 5 10 10 C 1.38227 * 120.04527 * 180.02562 * 9 8 7 11 11 C 1.38222 * 120.02745 * 359.97438 * 10 9 8 12 12 C 1.38440 * 119.97200 * 359.74021 * 11 10 9 13 13 F 1.35101 * 120.02565 * 180.27793 * 12 11 10 14 14 C 1.38174 * 119.98679 * 89.99781 * 8 7 5 15 15 C 1.52997 * 109.47444 * 239.99337 * 2 1 3 16 16 H 1.09002 * 109.50096 * 185.06450 * 15 2 1 17 17 C 1.53046 * 109.49491 * 64.99847 * 15 2 1 18 18 C 1.53039 * 109.53445 * 178.68255 * 17 15 2 19 19 C 1.53189 * 109.31241 * 61.37062 * 18 17 15 20 20 N 1.46926 * 108.77381 * 305.35859 * 19 18 17 21 21 C 1.36939 * 120.63314 * 233.58551 * 20 19 18 22 22 H 1.07996 * 119.99851 * 151.82872 * 21 20 19 23 23 C 1.38817 * 119.99830 * 331.83579 * 21 20 19 24 24 N 1.31617 * 119.99826 * 343.08295 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 163.08411 * 23 21 20 26 26 H 1.48496 * 109.47402 * 59.99751 * 25 23 21 27 27 H 1.48494 * 109.47253 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47154 * 299.99457 * 25 23 21 29 29 C 1.46930 * 118.73692 * 53.61087 * 20 19 18 30 30 H 1.08997 * 109.47379 * 300.00511 * 1 2 3 31 31 H 1.08998 * 109.46963 * 60.00657 * 1 2 3 32 32 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 33 33 H 0.97006 * 119.99713 * 94.99547 * 4 2 1 34 34 H 1.08995 * 109.47387 * 59.99686 * 7 5 4 35 35 H 1.09005 * 109.46927 * 299.99418 * 7 5 4 36 36 H 1.07995 * 119.97843 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.98591 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.01247 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.01589 * 0.02562 * 14 8 7 40 40 H 1.08991 * 109.46222 * 298.70610 * 17 15 2 41 41 H 1.09004 * 109.45580 * 58.68034 * 17 15 2 42 42 H 1.09007 * 109.49079 * 181.31951 * 18 17 15 43 43 H 1.08999 * 109.50297 * 301.38157 * 18 17 15 44 44 H 1.08998 * 109.58781 * 65.14728 * 19 18 17 45 45 H 1.09000 * 109.58562 * 185.57378 * 19 18 17 46 46 H 0.97001 * 119.99766 * 180.02562 * 24 23 21 47 47 H 1.08998 * 109.58555 * 186.59929 * 29 20 19 48 48 H 1.08995 * 109.58287 * 66.17915 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8589 1.1588 2.4114 7 6 2.6489 -0.7285 3.5878 8 6 2.6990 0.2399 4.7415 9 6 3.8471 0.9727 4.9791 10 6 3.8948 1.8609 6.0372 11 6 2.7943 2.0177 6.8587 12 6 1.6422 1.2887 6.6182 13 9 0.5640 1.4453 7.4171 14 6 1.5978 0.3945 5.5617 15 6 2.0400 -0.7214 -1.2491 16 1 3.1263 -0.8008 -1.2053 17 6 1.6355 0.0684 -2.4960 18 6 2.1734 -0.6350 -3.7442 19 6 1.5613 -2.0360 -3.8396 20 7 1.8220 -2.7525 -2.5837 21 6 2.4219 -3.9835 -2.5943 22 1 3.0108 -4.3044 -1.7478 23 6 2.2730 -4.8187 -3.6930 24 7 1.3126 -4.5946 -4.5646 25 14 3.4356 -6.2606 -3.9344 26 1 3.3355 -7.1775 -2.7706 27 1 3.0676 -6.9911 -5.1738 28 1 4.8286 -5.7592 -4.0512 29 6 1.4264 -2.1234 -1.3162 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 3.6479 -1.1210 3.3988 35 1 1.9759 -1.5502 3.8328 36 1 4.7073 0.8512 4.3375 37 1 4.7919 2.4332 6.2216 38 1 2.8316 2.7120 7.6851 39 1 0.7014 -0.1786 5.3764 40 1 0.5486 0.1268 -2.5521 41 1 2.0508 1.0747 -2.4391 42 1 1.9049 -0.0594 -4.6302 43 1 3.2584 -0.7152 -3.6775 44 1 0.4859 -1.9549 -3.9976 45 1 2.0149 -2.5771 -4.6700 46 1 1.2083 -5.1785 -5.3322 47 1 1.7910 -2.7222 -0.4817 48 1 0.3401 -2.0495 -1.2685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714155481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:07 Heat of formation + Delta-G solvation = -67.215559 kcal Electronic energy + Delta-G solvation = -28573.617601 eV Core-core repulsion = 24542.047882 eV Total energy + Delta-G solvation = -4031.569719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.90221 -41.22325 -40.02263 -39.17299 -36.62390 -34.65203 -33.89387 -32.42199 -32.20674 -31.47576 -29.59997 -28.52707 -27.19536 -25.25201 -23.90277 -23.69967 -23.15175 -21.98927 -21.14900 -20.08159 -18.71688 -18.30777 -17.96693 -17.40971 -17.11526 -16.85702 -16.79446 -16.57564 -16.13697 -15.78837 -15.64877 -15.10143 -14.95723 -14.81098 -14.68093 -14.34838 -14.19913 -14.02487 -13.93447 -13.64911 -13.29577 -13.08057 -13.01776 -12.90519 -12.72917 -12.67640 -12.53156 -12.28752 -12.03382 -11.99242 -11.93336 -11.66314 -11.48226 -11.25288 -11.05711 -10.84935 -10.48649 -10.01347 -9.90142 -9.62022 -8.62166 -7.83740 -5.28859 0.18594 0.26645 1.48785 1.51468 1.57434 1.70973 2.22600 2.53524 2.73300 3.25690 3.31096 3.61612 3.63355 3.83925 3.92398 4.02199 4.03228 4.08866 4.12805 4.27874 4.34771 4.37511 4.45714 4.49991 4.52197 4.64361 4.68453 4.72799 4.87805 4.91368 4.95088 5.00745 5.07191 5.11303 5.16541 5.16713 5.24082 5.31576 5.36708 5.37472 5.49605 5.52107 5.57483 5.62834 5.70874 5.81292 5.96007 6.42376 6.63207 7.18322 7.31812 7.90595 8.42426 9.22243 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.002310 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.077665 B =12120.333038 C =12801.483294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.077 0.923 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.578 6.578 7 C -0.101 4.101 8 C -0.045 4.045 9 C -0.122 4.122 10 C -0.090 4.090 11 C -0.161 4.161 12 C 0.072 3.928 13 F -0.152 7.152 14 C -0.155 4.155 15 C -0.096 4.096 16 H 0.068 0.932 17 C -0.099 4.099 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.071 0.929 23 C -0.053 4.053 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.273 1.273 27 H -0.299 1.299 28 H -0.279 1.279 29 C 0.151 3.849 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.049 0.951 44 H -0.006 1.006 45 H 0.049 0.951 46 H 0.248 0.752 47 H 0.057 0.943 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.132 11.288 19.073 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.095 0.905 4 N -0.368 5.368 5 C 0.303 3.697 6 O -0.458 6.458 7 C -0.141 4.141 8 C -0.046 4.046 9 C -0.140 4.140 10 C -0.108 4.108 11 C -0.179 4.179 12 C 0.053 3.947 13 F -0.131 7.131 14 C -0.173 4.173 15 C -0.116 4.116 16 H 0.086 0.914 17 C -0.137 4.137 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.089 0.911 23 C -0.248 4.248 24 N -0.582 5.582 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.225 1.225 28 H -0.205 1.205 29 C 0.026 3.974 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.012 0.988 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.839 12.010 19.003 22.995 hybrid contribution -0.115 -1.347 -0.521 1.449 sum 4.724 10.663 18.482 21.854 Atomic orbital electron populations 1.22195 0.95345 1.02299 1.01870 1.20776 0.94056 0.96249 0.83402 0.90530 1.46147 1.66662 1.14744 1.09266 1.20944 0.76886 0.86930 0.84964 1.90703 1.51698 1.17804 1.85574 1.20791 1.06542 0.97807 0.88920 1.19329 0.93330 0.97185 0.94740 1.21428 0.98396 0.96046 0.98170 1.21337 0.98588 0.97318 0.93539 1.21422 0.92384 1.01347 1.02785 1.17955 0.84737 0.99988 0.92007 1.91462 1.54223 1.94853 1.72584 1.21136 1.00249 1.00286 0.95670 1.21719 1.00271 0.96095 0.93543 0.91357 1.21416 1.00718 0.98152 0.93366 1.22012 0.99931 0.97004 0.98075 1.20600 0.95135 0.90212 0.89219 1.44284 1.70108 1.17259 1.01563 1.19497 1.23008 0.92742 1.03674 0.91115 1.25784 0.98857 1.00431 0.99712 1.70185 1.32018 1.40746 1.15261 0.85391 0.79041 0.79453 0.76863 1.19898 1.22539 1.20544 1.21128 0.96088 0.91970 0.88256 0.93320 0.91122 0.92095 0.75226 0.84613 0.85515 0.83615 0.82159 0.83201 0.84736 0.92064 0.90948 0.91491 0.93195 0.98756 0.93230 0.94297 0.92441 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.76 71.98 0.63 -3.49 16 2 C 0.16 4.13 2.35 44.99 0.11 4.24 16 3 H 0.08 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.72 -15.77 5.01 -442.54 -2.22 -17.99 16 5 C 0.52 11.67 7.79 87.66 0.68 12.35 16 6 O -0.58 -17.91 15.70 -3.02 -0.05 -17.96 16 7 C -0.10 -1.50 5.83 29.10 0.17 -1.33 16 8 C -0.05 -0.83 4.37 -19.87 -0.09 -0.92 16 9 C -0.12 -1.96 9.70 22.27 0.22 -1.75 16 10 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 11 C -0.16 -2.72 10.03 22.31 0.22 -2.50 16 12 C 0.07 1.53 7.30 22.38 0.16 1.70 16 13 F -0.15 -3.55 17.27 44.97 0.78 -2.77 16 14 C -0.15 -3.18 9.68 22.31 0.22 -2.97 16 15 C -0.10 -2.84 2.27 -10.72 -0.02 -2.87 16 16 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 17 C -0.10 -2.95 4.89 30.62 0.15 -2.80 16 18 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 19 C 0.17 8.16 5.30 86.36 0.46 8.61 16 20 N -0.61 -28.83 2.99 -699.11 -2.09 -30.92 16 21 C -0.26 -13.52 9.58 84.03 0.81 -12.71 16 22 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 23 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 24 N -0.94 -54.45 11.20 21.65 0.24 -54.21 16 25 Si 0.96 43.52 29.59 68.60 2.03 45.55 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.15 5.53 5.26 86.36 0.45 5.99 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.77 6.60 -2.39 -0.02 1.75 16 32 H 0.06 1.63 6.23 -2.38 -0.01 1.62 16 33 H 0.41 7.77 7.28 -92.70 -0.68 7.10 16 34 H 0.14 1.27 8.09 -2.39 -0.02 1.26 16 35 H 0.13 1.38 8.08 -2.38 -0.02 1.36 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.06 1.84 6.63 -2.39 -0.02 1.82 16 41 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.05 2.67 6.06 -2.39 -0.01 2.65 16 46 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 47 H 0.06 1.96 6.75 -2.39 -0.02 1.94 16 48 H 0.02 0.79 6.06 -2.39 -0.01 0.78 16 Total: -1.00 -69.03 383.87 3.97 -65.05 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.29 Total: 19.73 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.99 Total: -6.48 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.07 Total: -103.12 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.03 3.97 -65.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714155481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.165 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds