Wall clock time and date at job start Tue Mar 31 2020 17:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47571 * 2 1 4 4 N 1.46502 * 109.46926 * 239.99620 * 2 1 3 5 5 C 1.34778 * 119.99663 * 85.00065 * 4 2 1 6 6 O 1.21286 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00163 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47411 * 180.02562 * 7 5 4 9 9 C 1.38260 * 119.98637 * 90.00152 * 8 7 5 10 10 C 1.38222 * 120.05336 * 179.97438 * 9 8 7 11 11 C 1.38220 * 120.02651 * 0.02562 * 10 9 8 12 12 C 1.38442 * 119.97159 * 359.97438 * 11 10 9 13 13 F 1.35105 * 120.02497 * 180.02562 * 12 11 10 14 14 C 1.38181 * 119.98971 * 269.73364 * 8 7 5 15 15 C 1.53005 * 109.46995 * 120.00237 * 2 1 3 16 16 H 1.08998 * 109.52278 * 180.02562 * 15 2 1 17 17 C 1.53042 * 109.49769 * 300.15847 * 15 2 1 18 18 C 1.53348 * 109.60776 * 181.32895 * 17 15 2 19 19 C 1.53190 * 109.14808 * 298.71089 * 18 17 15 20 20 N 1.46934 * 108.89394 * 54.57662 * 19 18 17 21 21 C 1.36935 * 120.62776 * 126.33972 * 20 19 18 22 22 H 1.08003 * 120.00334 * 331.82288 * 21 20 19 23 23 C 1.38816 * 120.00109 * 151.82327 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.07479 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.07501 * 23 21 20 26 26 H 1.48500 * 109.47341 * 59.99642 * 25 23 21 27 27 H 1.48504 * 109.47235 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46651 * 299.99824 * 25 23 21 29 29 C 1.46918 * 118.74029 * 306.32412 * 20 19 18 30 30 H 1.08995 * 109.47294 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46846 * 300.00072 * 1 2 3 33 33 H 0.96994 * 120.00696 * 265.00004 * 4 2 1 34 34 H 1.08993 * 109.47453 * 300.00653 * 7 5 4 35 35 H 1.09006 * 109.46463 * 60.00645 * 7 5 4 36 36 H 1.08004 * 119.97766 * 0.03043 * 9 8 7 37 37 H 1.07999 * 119.99216 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.01966 * 180.02562 * 11 10 9 39 39 H 1.08004 * 120.01113 * 359.97438 * 14 8 7 40 40 H 1.09004 * 109.45660 * 301.34128 * 17 15 2 41 41 H 1.08998 * 109.45474 * 61.30823 * 17 15 2 42 42 H 1.08993 * 109.68240 * 178.74885 * 18 17 15 43 43 H 1.08993 * 109.47490 * 58.54694 * 18 17 15 44 44 H 1.09005 * 109.58787 * 294.72215 * 19 18 17 45 45 H 1.09000 * 109.58862 * 174.43890 * 19 18 17 46 46 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 47 47 H 1.08994 * 109.59053 * 173.39511 * 29 20 19 48 48 H 1.09002 * 109.58693 * 293.81963 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6498 -0.7286 -3.5875 8 6 2.7009 0.2399 -4.7410 9 6 3.8490 0.9731 -4.9772 10 6 3.8977 1.8613 -6.0352 11 6 2.7981 2.0179 -6.8579 12 6 1.6479 1.2843 -6.6223 13 9 0.5727 1.4361 -7.4261 14 6 1.6024 0.3906 -5.5654 15 6 2.0400 -0.7213 1.2493 16 1 3.1300 -0.7214 1.2504 17 6 1.5269 -0.0027 2.4993 18 6 2.0638 -0.7040 3.7529 19 6 1.5533 -2.1482 3.7782 20 7 1.9180 -2.8040 2.5149 21 6 2.6064 -3.9877 2.5167 22 1 3.2673 -4.2268 3.3368 23 6 2.4549 -4.8803 1.4645 24 7 1.4299 -4.7658 0.6468 25 14 3.7057 -6.2440 1.2090 26 1 3.7444 -7.1121 2.4132 27 1 3.3197 -7.0545 0.0260 28 1 5.0476 -5.6490 0.9843 29 6 1.5297 -2.1658 1.2499 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.6490 -1.1205 -3.3979 35 1 1.9774 -1.5508 -3.8325 36 1 4.7089 0.8511 -4.3353 37 1 4.7951 2.4333 -6.2191 38 1 2.8363 2.7117 -7.6847 39 1 0.7073 -0.1857 -5.3835 40 1 1.8683 1.0324 2.4888 41 1 0.4372 -0.0256 2.5096 42 1 1.7172 -0.1800 4.6435 43 1 3.1535 -0.7037 3.7309 44 1 0.4692 -2.1506 3.8914 45 1 2.0090 -2.6822 4.6120 46 1 1.3238 -5.3897 -0.0882 47 1 1.9718 -2.7098 0.4153 48 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714155482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:13 Heat of formation + Delta-G solvation = -50.713759 kcal Electronic energy + Delta-G solvation = -29014.121101 eV Core-core repulsion = 24983.266953 eV Total energy + Delta-G solvation = -4030.854147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.99014 -40.08634 -38.95226 -37.83074 -35.05313 -33.17693 -32.94267 -31.31548 -30.66956 -29.93716 -28.38926 -27.55891 -25.34062 -23.90584 -22.89120 -22.41030 -21.99879 -20.53100 -19.93562 -18.63311 -17.45289 -17.09609 -16.55786 -16.53628 -16.30620 -15.71653 -15.65370 -15.01829 -14.82152 -14.20090 -14.11314 -14.04513 -13.74238 -13.54056 -13.44796 -13.28058 -13.05166 -12.64718 -12.40479 -12.27464 -12.22665 -12.02616 -11.75888 -11.68839 -11.52201 -11.20339 -11.06932 -10.87535 -10.64132 -10.47773 -10.21860 -10.16571 -9.95092 -9.73242 -9.55881 -9.43751 -9.07437 -8.78155 -8.72787 -8.53638 -6.71511 -5.86716 -3.28567 1.01143 1.07843 2.83430 3.26468 3.31910 3.38008 3.39672 3.67094 4.08966 4.42624 4.45549 4.60209 4.84806 5.00244 5.04278 5.14147 5.15977 5.26219 5.29654 5.40465 5.43855 5.55481 5.56794 5.68679 5.69737 5.78699 5.89152 5.91274 5.95883 6.06527 6.13550 6.20516 6.26879 6.28211 6.33563 6.43949 6.47003 6.53111 6.65658 6.75188 6.77957 6.83560 6.89823 6.98784 7.26164 7.52434 7.72069 7.81807 8.37160 8.46520 9.14370 9.77298 10.34999 11.21376 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.002923 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.053132 B = 9576.440624 C =10802.686447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.076 0.924 4 N -0.717 5.717 5 C 0.514 3.486 6 O -0.544 6.544 7 C -0.110 4.110 8 C -0.028 4.028 9 C -0.116 4.116 10 C -0.091 4.091 11 C -0.158 4.158 12 C 0.097 3.903 13 F -0.142 7.142 14 C -0.140 4.140 15 C -0.123 4.123 16 H 0.067 0.933 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.144 3.856 20 N -0.592 5.592 21 C -0.250 4.250 22 H 0.064 0.936 23 C 0.002 3.998 24 N -0.904 5.904 25 Si 0.900 3.100 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.178 3.822 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.084 0.916 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 10.827 -9.907 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.095 0.905 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.421 6.421 7 C -0.150 4.150 8 C -0.029 4.029 9 C -0.134 4.134 10 C -0.109 4.109 11 C -0.177 4.177 12 C 0.078 3.922 13 F -0.121 7.121 14 C -0.158 4.158 15 C -0.144 4.144 16 H 0.086 0.914 17 C -0.140 4.140 18 C -0.173 4.173 19 C 0.017 3.983 20 N -0.314 5.314 21 C -0.380 4.380 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.548 5.548 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.052 3.948 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.605 11.528 -10.089 15.540 hybrid contribution 0.477 -1.191 -0.262 1.310 sum 3.083 10.337 -10.351 14.950 Atomic orbital electron populations 1.22255 0.95644 1.02934 1.01462 1.20930 0.94047 0.96261 0.83860 0.90548 1.46240 1.66416 1.14768 1.09432 1.20336 0.77972 0.87317 0.84369 1.90697 1.50431 1.15937 1.85065 1.20755 1.04783 0.98043 0.91382 1.19143 0.93118 0.96320 0.94320 1.21082 0.98101 0.96410 0.97823 1.20945 0.97891 0.97679 0.94345 1.21106 0.92827 1.01589 1.02206 1.17637 0.84342 0.98845 0.91368 1.91493 1.53881 1.94750 1.71971 1.20991 0.99785 0.99898 0.95172 1.22133 1.00560 0.99589 0.92099 0.91413 1.21482 1.00311 0.97497 0.94694 1.22051 1.00635 0.98299 0.96325 1.20925 0.96378 0.91013 0.89958 1.44014 1.65414 1.22517 0.99503 1.19166 1.17676 0.94070 1.07090 0.91806 1.25016 0.97048 0.97382 1.00155 1.70028 1.27329 1.38508 1.18974 0.86403 0.81313 0.81814 0.77460 1.20909 1.21590 1.21070 1.20853 0.96737 0.86937 0.90275 0.93109 0.91241 0.91797 0.75558 0.87406 0.87427 0.85391 0.85051 0.84986 0.84828 0.93551 0.92169 0.93072 0.92503 0.96503 0.92977 0.93622 0.89789 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.79 37.16 0.33 -2.24 16 2 C 0.15 2.45 2.41 -67.93 -0.16 2.28 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.72 -10.79 5.00 -53.80 -0.27 -11.06 16 5 C 0.51 7.56 7.79 -10.99 -0.09 7.47 16 6 O -0.54 -9.73 15.70 5.55 0.09 -9.64 16 7 C -0.11 -1.23 5.83 -29.04 -0.17 -1.40 16 8 C -0.03 -0.34 4.37 -104.63 -0.46 -0.79 16 9 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 10 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 11 C -0.16 -1.63 10.03 -39.51 -0.40 -2.03 16 12 C 0.10 1.17 7.30 -39.42 -0.29 0.89 16 13 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 14 C -0.14 -1.70 9.68 -39.51 -0.38 -2.08 16 15 C -0.12 -2.14 2.33 -90.50 -0.21 -2.35 16 16 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.10 -1.63 4.77 -26.53 -0.13 -1.76 16 18 C -0.13 -2.23 6.11 -26.45 -0.16 -2.39 16 19 C 0.14 2.89 6.50 -3.71 -0.02 2.87 16 20 N -0.59 -13.96 2.99 -172.32 -0.52 -14.47 16 21 C -0.25 -6.51 9.58 -15.06 -0.14 -6.66 16 22 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 23 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 24 N -0.90 -24.18 11.20 55.49 0.62 -23.56 16 25 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.18 3.79 4.08 -3.72 -0.02 3.77 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.17 6.32 -51.93 -0.33 0.84 16 32 H 0.06 0.92 6.46 -51.93 -0.34 0.58 16 33 H 0.41 6.17 6.97 -40.82 -0.28 5.88 16 34 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.96 6.50 -51.93 -0.34 0.62 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 46 H 0.25 6.60 8.31 -40.82 -0.34 6.27 16 47 H 0.08 1.94 4.64 -51.93 -0.24 1.70 16 48 H 0.03 0.58 6.18 -51.93 -0.32 0.25 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -29.93 383.33 -9.73 -39.65 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.27 Total: 6.93 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.17 Total: -7.33 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.16 Total: -49.09 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.93 -9.73 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714155482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.062 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds