Wall clock time and date at job start Tue Mar 31 2020 17:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47571 * 2 1 4 4 N 1.46502 * 109.46926 * 239.99620 * 2 1 3 5 5 C 1.34778 * 119.99663 * 85.00065 * 4 2 1 6 6 O 1.21286 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00163 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47411 * 180.02562 * 7 5 4 9 9 C 1.38260 * 119.98637 * 90.00152 * 8 7 5 10 10 C 1.38222 * 120.05336 * 179.97438 * 9 8 7 11 11 C 1.38220 * 120.02651 * 0.02562 * 10 9 8 12 12 C 1.38442 * 119.97159 * 359.97438 * 11 10 9 13 13 F 1.35105 * 120.02497 * 180.02562 * 12 11 10 14 14 C 1.38181 * 119.98971 * 269.73364 * 8 7 5 15 15 C 1.53005 * 109.46995 * 120.00237 * 2 1 3 16 16 H 1.08998 * 109.52278 * 180.02562 * 15 2 1 17 17 C 1.53042 * 109.49769 * 300.15847 * 15 2 1 18 18 C 1.53348 * 109.60776 * 181.32895 * 17 15 2 19 19 C 1.53190 * 109.14808 * 298.71089 * 18 17 15 20 20 N 1.46934 * 108.89394 * 54.57662 * 19 18 17 21 21 C 1.36935 * 120.62776 * 126.33972 * 20 19 18 22 22 H 1.08003 * 120.00334 * 331.82288 * 21 20 19 23 23 C 1.38816 * 120.00109 * 151.82327 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.07479 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.07501 * 23 21 20 26 26 H 1.48500 * 109.47341 * 59.99642 * 25 23 21 27 27 H 1.48504 * 109.47235 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46651 * 299.99824 * 25 23 21 29 29 C 1.46918 * 118.74029 * 306.32412 * 20 19 18 30 30 H 1.08995 * 109.47294 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46846 * 300.00072 * 1 2 3 33 33 H 0.96994 * 120.00696 * 265.00004 * 4 2 1 34 34 H 1.08993 * 109.47453 * 300.00653 * 7 5 4 35 35 H 1.09006 * 109.46463 * 60.00645 * 7 5 4 36 36 H 1.08004 * 119.97766 * 0.03043 * 9 8 7 37 37 H 1.07999 * 119.99216 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.01966 * 180.02562 * 11 10 9 39 39 H 1.08004 * 120.01113 * 359.97438 * 14 8 7 40 40 H 1.09004 * 109.45660 * 301.34128 * 17 15 2 41 41 H 1.08998 * 109.45474 * 61.30823 * 17 15 2 42 42 H 1.08993 * 109.68240 * 178.74885 * 18 17 15 43 43 H 1.08993 * 109.47490 * 58.54694 * 18 17 15 44 44 H 1.09005 * 109.58787 * 294.72215 * 19 18 17 45 45 H 1.09000 * 109.58862 * 174.43890 * 19 18 17 46 46 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 47 47 H 1.08994 * 109.59053 * 173.39511 * 29 20 19 48 48 H 1.09002 * 109.58693 * 293.81963 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6498 -0.7286 -3.5875 8 6 2.7009 0.2399 -4.7410 9 6 3.8490 0.9731 -4.9772 10 6 3.8977 1.8613 -6.0352 11 6 2.7981 2.0179 -6.8579 12 6 1.6479 1.2843 -6.6223 13 9 0.5727 1.4361 -7.4261 14 6 1.6024 0.3906 -5.5654 15 6 2.0400 -0.7213 1.2493 16 1 3.1300 -0.7214 1.2504 17 6 1.5269 -0.0027 2.4993 18 6 2.0638 -0.7040 3.7529 19 6 1.5533 -2.1482 3.7782 20 7 1.9180 -2.8040 2.5149 21 6 2.6064 -3.9877 2.5167 22 1 3.2673 -4.2268 3.3368 23 6 2.4549 -4.8803 1.4645 24 7 1.4299 -4.7658 0.6468 25 14 3.7057 -6.2440 1.2090 26 1 3.7444 -7.1121 2.4132 27 1 3.3197 -7.0545 0.0260 28 1 5.0476 -5.6490 0.9843 29 6 1.5297 -2.1658 1.2499 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.6490 -1.1205 -3.3979 35 1 1.9774 -1.5508 -3.8325 36 1 4.7089 0.8511 -4.3353 37 1 4.7951 2.4333 -6.2191 38 1 2.8363 2.7117 -7.6847 39 1 0.7073 -0.1857 -5.3835 40 1 1.8683 1.0324 2.4888 41 1 0.4372 -0.0256 2.5096 42 1 1.7172 -0.1800 4.6435 43 1 3.1535 -0.7037 3.7309 44 1 0.4692 -2.1506 3.8914 45 1 2.0090 -2.6822 4.6120 46 1 1.3238 -5.3897 -0.0882 47 1 1.9718 -2.7098 0.4153 48 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714155482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:12 Heat of formation + Delta-G solvation = -66.009365 kcal Electronic energy + Delta-G solvation = -29014.784368 eV Core-core repulsion = 24983.266953 eV Total energy + Delta-G solvation = -4031.517414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.91277 -41.22649 -40.02064 -39.16345 -36.51829 -34.78878 -33.94199 -32.71860 -31.62803 -31.48076 -29.74955 -28.55920 -27.16171 -25.25201 -23.95626 -23.71136 -23.11725 -21.88760 -21.14279 -20.13356 -18.70120 -18.34285 -17.93377 -17.42753 -17.15977 -17.04597 -16.61013 -16.55287 -16.09515 -15.75782 -15.58815 -15.16842 -14.96617 -14.79516 -14.66406 -14.37382 -14.21061 -14.08532 -13.92427 -13.65954 -13.24859 -13.09509 -12.97956 -12.90916 -12.76758 -12.60740 -12.55509 -12.35187 -12.10199 -12.01119 -11.83297 -11.69277 -11.47862 -11.17321 -11.02832 -10.86433 -10.47033 -10.00688 -9.91840 -9.63678 -8.59331 -7.82322 -5.27120 0.17148 0.24901 1.50735 1.52326 1.58868 1.67818 2.23467 2.54950 2.72098 3.23524 3.30104 3.60730 3.63969 3.81603 3.92311 4.02734 4.06823 4.10081 4.18098 4.25836 4.31387 4.34205 4.43559 4.48742 4.52222 4.60690 4.66758 4.77973 4.86975 4.89599 4.92710 5.03447 5.06789 5.09713 5.14912 5.18636 5.22557 5.29933 5.34748 5.44008 5.47986 5.50881 5.59141 5.61444 5.72057 5.84220 5.94312 6.44443 6.60522 7.21130 7.27599 7.91555 8.43781 9.22735 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.002923 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.053132 B = 9576.440624 C =10802.686447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.078 0.922 4 N -0.718 5.718 5 C 0.515 3.485 6 O -0.576 6.576 7 C -0.104 4.104 8 C -0.043 4.043 9 C -0.123 4.123 10 C -0.088 4.088 11 C -0.158 4.158 12 C 0.074 3.926 13 F -0.151 7.151 14 C -0.157 4.157 15 C -0.108 4.108 16 H 0.059 0.941 17 C -0.101 4.101 18 C -0.123 4.123 19 C 0.137 3.863 20 N -0.612 5.612 21 C -0.265 4.265 22 H 0.059 0.941 23 C -0.041 4.041 24 N -0.926 5.926 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.278 1.278 29 C 0.189 3.811 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.408 0.592 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.012 0.988 45 H 0.048 0.952 46 H 0.251 0.749 47 H 0.063 0.937 48 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 12.004 -9.985 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.096 0.904 4 N -0.369 5.369 5 C 0.303 3.697 6 O -0.456 6.456 7 C -0.143 4.143 8 C -0.044 4.044 9 C -0.141 4.141 10 C -0.105 4.105 11 C -0.177 4.177 12 C 0.055 3.945 13 F -0.130 7.130 14 C -0.176 4.176 15 C -0.128 4.128 16 H 0.077 0.923 17 C -0.139 4.139 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.335 5.335 21 C -0.396 4.396 22 H 0.077 0.923 23 C -0.237 4.237 24 N -0.572 5.572 25 Si 0.788 3.212 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.064 3.936 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.244 0.756 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 4.126 12.714 -10.153 16.786 hybrid contribution -0.018 -1.553 -0.193 1.565 sum 4.108 11.162 -10.346 15.764 Atomic orbital electron populations 1.22166 0.95403 1.01876 1.01949 1.20819 0.94104 0.96020 0.83632 0.90413 1.46278 1.66371 1.14699 1.09580 1.20878 0.77003 0.86943 0.84885 1.90676 1.51912 1.17443 1.85573 1.20776 1.06161 0.97914 0.89469 1.19270 0.93563 0.97057 0.94499 1.21412 0.98202 0.96137 0.98342 1.21340 0.98675 0.97160 0.93349 1.21432 0.92228 1.01241 1.02784 1.17920 0.84940 0.99852 0.91754 1.91463 1.54434 1.94891 1.72214 1.21118 1.00165 1.00460 0.95810 1.21906 0.99780 0.97305 0.93850 0.92289 1.21502 1.00474 0.98562 0.93340 1.21937 1.00269 0.95961 0.98034 1.21086 0.96149 0.93099 0.88542 1.44311 1.65516 1.22441 1.01234 1.19413 1.17876 0.95161 1.07104 0.92298 1.25640 0.98503 0.99409 1.00117 1.70157 1.28544 1.39220 1.19266 0.85472 0.79464 0.79309 0.76915 1.21014 1.21783 1.20405 1.20653 0.95215 0.88882 0.88898 0.93491 0.92963 0.90410 0.75603 0.85091 0.86231 0.83741 0.81872 0.82848 0.85056 0.90902 0.91902 0.90001 0.92900 0.97006 0.93354 0.93981 0.91878 0.97809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 8.79 71.98 0.63 -4.16 16 2 C 0.16 4.95 2.41 44.99 0.11 5.06 16 3 H 0.08 2.46 7.58 -2.39 -0.02 2.44 16 4 N -0.72 -21.43 5.00 -442.53 -2.21 -23.64 16 5 C 0.52 14.86 7.79 87.66 0.68 15.54 16 6 O -0.58 -20.36 15.70 -3.05 -0.05 -20.41 16 7 C -0.10 -2.22 5.83 29.10 0.17 -2.05 16 8 C -0.04 -0.98 4.37 -19.87 -0.09 -1.07 16 9 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 10 C -0.09 -1.46 10.04 22.26 0.22 -1.24 16 11 C -0.16 -3.00 10.03 22.31 0.22 -2.77 16 12 C 0.07 1.78 7.30 22.38 0.16 1.94 16 13 F -0.15 -3.85 17.27 44.97 0.78 -3.07 16 14 C -0.16 -3.83 9.68 22.31 0.22 -3.61 16 15 C -0.11 -3.67 2.33 -10.71 -0.03 -3.69 16 16 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 17 C -0.10 -3.00 4.77 30.73 0.15 -2.86 16 18 C -0.12 -3.84 6.11 30.77 0.19 -3.65 16 19 C 0.14 5.44 6.50 86.36 0.56 6.00 16 20 N -0.61 -29.02 2.99 -699.10 -2.09 -31.12 16 21 C -0.27 -13.92 9.58 84.03 0.81 -13.11 16 22 H 0.06 3.07 7.89 -2.91 -0.02 3.05 16 23 C -0.04 -2.12 4.92 84.86 0.42 -1.71 16 24 N -0.93 -50.32 11.20 21.65 0.24 -50.08 16 25 Si 0.96 42.26 29.59 68.60 2.03 44.29 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.19 8.14 4.08 86.36 0.35 8.49 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.78 6.32 -2.39 -0.02 1.77 16 32 H 0.08 2.14 6.46 -2.39 -0.02 2.12 16 33 H 0.41 12.39 6.97 -92.71 -0.65 11.75 16 34 H 0.13 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.12 2.25 8.08 -2.38 -0.02 2.23 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.06 1.86 6.50 -2.39 -0.02 1.84 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 46 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 47 H 0.06 2.97 4.64 -2.39 -0.01 2.96 16 48 H 0.00 0.19 6.18 -2.39 -0.01 0.17 16 Total: -1.00 -64.69 383.33 4.01 -60.68 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.32 Total: 28.41 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.00 Total: -5.06 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.06 Total: -104.84 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -64.69 4.01 -60.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714155482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.334 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds