Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47622 * 2 1 4 4 C 1.36933 * 119.99960 * 265.62844 * 3 2 1 5 5 H 1.08002 * 120.00390 * 314.93838 * 4 3 2 6 6 C 1.38816 * 120.00021 * 134.93927 * 4 3 2 7 7 N 1.31615 * 119.99849 * 348.46401 * 6 4 3 8 8 Si 1.86804 * 120.00185 * 168.46737 * 6 4 3 9 9 H 1.48503 * 109.47027 * 59.99845 * 8 6 4 10 10 H 1.48496 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46960 * 299.99951 * 8 6 4 12 12 C 1.46501 * 119.99938 * 85.62074 * 3 2 1 13 13 C 1.52998 * 109.46618 * 90.00408 * 12 3 2 14 14 N 1.46500 * 109.47136 * 179.97438 * 13 12 3 15 15 C 1.34780 * 120.00367 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99639 * 5.15030 * 15 14 13 17 17 C 1.50697 * 120.00020 * 185.15645 * 15 14 13 18 18 C 1.50703 * 112.84807 * 298.39195 * 17 15 14 19 19 C 1.38246 * 119.96920 * 102.94802 * 18 17 15 20 20 C 1.38201 * 120.02329 * 179.97438 * 19 18 17 21 21 C 1.38458 * 119.97458 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02328 * 179.97438 * 21 20 19 23 23 C 1.38458 * 119.94834 * 359.97438 * 21 20 19 24 24 C 1.38201 * 119.97502 * 0.02562 * 23 21 20 25 25 C 1.53780 * 113.69612 * 69.66413 * 17 15 14 26 26 C 1.53788 * 87.07882 * 89.12590 * 25 17 15 27 27 C 1.53777 * 87.08027 * 25.43529 * 26 25 17 28 28 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46472 * 299.99846 * 1 2 3 30 30 H 1.08997 * 109.46696 * 59.99862 * 1 2 3 31 31 H 1.09005 * 109.47135 * 240.00173 * 2 1 3 32 32 H 1.09001 * 109.47412 * 120.00217 * 2 1 3 33 33 H 0.97003 * 119.99887 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47194 * 330.01060 * 12 3 2 35 35 H 1.08998 * 109.47354 * 210.00167 * 12 3 2 36 36 H 1.09002 * 109.47329 * 60.00366 * 13 12 3 37 37 H 1.09000 * 109.47708 * 300.00306 * 13 12 3 38 38 H 0.97004 * 119.99749 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.99207 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.01215 * 180.27588 * 20 19 18 41 41 H 1.08007 * 120.01025 * 180.02562 * 23 21 20 42 42 H 1.07998 * 119.98349 * 180.02562 * 24 23 21 43 43 H 1.08990 * 113.61875 * 203.67313 * 25 17 15 44 44 H 1.09002 * 113.60985 * 334.58505 * 25 17 15 45 45 H 1.09004 * 113.61254 * 270.88808 * 26 25 17 46 46 H 1.09001 * 113.68729 * 139.99806 * 26 25 17 47 47 H 1.09006 * 113.61561 * 220.01948 * 27 26 25 48 48 H 1.08993 * 113.69331 * 89.12579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3319 1.9965 -1.1824 5 1 2.9109 1.4713 -1.9277 6 6 1.9056 3.2954 -1.4233 7 7 1.0181 3.8547 -0.6285 8 14 2.5914 4.2495 -2.8755 9 1 2.2755 3.5288 -4.1349 10 1 1.9794 5.6019 -2.9127 11 1 4.0642 4.3758 -2.7336 12 6 2.1713 2.1040 1.2650 13 6 3.5806 1.8762 1.8154 14 7 3.7338 2.5995 3.0801 15 6 4.9016 2.5445 3.7508 16 8 5.8546 1.9745 3.2632 17 6 5.0231 3.1912 5.1065 18 6 4.7933 4.6801 5.0674 19 6 3.5889 5.2045 5.4981 20 6 3.3771 6.5698 5.4631 21 6 4.3716 7.4123 4.9961 22 9 4.1655 8.7471 4.9610 23 6 5.5775 6.8859 4.5650 24 6 5.7869 5.5203 4.6008 25 6 4.2246 2.4734 6.2074 26 6 5.4774 1.6140 6.4463 27 6 6.2933 2.7839 5.8717 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.7198 4.7623 -0.7970 34 1 1.4373 1.7387 1.9833 35 1 2.0152 3.1694 1.0959 36 1 4.3147 2.2415 1.0972 37 1 3.7368 0.8107 1.9845 38 1 2.9947 3.1180 3.4349 39 1 2.8131 4.5471 5.8620 40 1 2.4378 6.9796 5.8038 41 1 6.3541 7.5422 4.2008 42 1 6.7276 5.1096 4.2650 43 1 3.9684 3.1153 7.0501 44 1 3.3725 1.9077 5.8304 45 1 5.5129 0.7139 5.8325 46 1 5.6788 1.4166 7.4992 47 1 7.1114 2.4691 5.2237 48 1 6.6035 3.5116 6.6216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714587351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = -25.001429 kcal Electronic energy + Delta-G solvation = -29246.278914 eV Core-core repulsion = 25216.539737 eV Total energy + Delta-G solvation = -4029.739177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.98683 -41.02629 -38.67498 -37.25426 -36.14070 -34.12184 -31.80367 -31.33910 -31.08906 -29.71226 -27.66973 -26.04250 -25.80407 -23.96360 -22.95142 -22.54749 -21.93007 -21.13781 -20.04688 -18.89673 -17.88810 -17.20339 -16.57826 -16.36837 -15.98835 -15.67090 -15.55741 -14.98729 -14.88144 -14.50118 -14.34200 -13.85145 -13.78460 -13.71256 -13.44875 -13.29006 -12.80783 -12.68700 -12.59579 -12.34892 -12.23871 -12.19631 -11.91655 -11.23728 -11.12817 -11.05899 -11.05048 -10.86888 -10.68999 -10.63780 -10.41424 -10.38849 -10.15084 -9.94848 -9.77017 -9.62641 -9.25737 -8.65110 -8.57469 -8.47452 -6.52592 -5.82156 -3.53190 0.95251 1.08148 2.84346 3.31821 3.35758 3.40005 3.42682 3.56934 4.12537 4.24151 4.43799 4.45989 4.48320 4.61048 4.71116 4.74972 4.90358 5.11363 5.27541 5.31823 5.32481 5.50964 5.55337 5.57442 5.73183 5.75087 5.82294 5.94078 5.94545 5.97840 6.07168 6.09077 6.13716 6.16809 6.25903 6.33380 6.41737 6.52959 6.54377 6.66643 6.72064 6.86421 6.98430 7.04674 7.25849 7.55620 7.79258 7.90806 8.52996 8.55479 9.16533 9.73243 10.36158 11.17020 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003865 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.850484 B = 7241.826656 C = 8987.089193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 N -0.579 5.579 4 C -0.265 4.265 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.142 3.858 13 C 0.098 3.902 14 N -0.713 5.713 15 C 0.537 3.463 16 O -0.541 6.541 17 C -0.070 4.070 18 C -0.075 4.075 19 C -0.084 4.084 20 C -0.149 4.149 21 C 0.096 3.904 22 F -0.142 7.142 23 C -0.150 4.150 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.140 4.140 27 C -0.113 4.113 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.256 0.744 34 H 0.027 0.973 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.397 0.603 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 1.977 17.330 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.300 5.300 4 C -0.395 4.395 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.207 1.207 12 C 0.014 3.986 13 C -0.027 4.027 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.418 6.418 17 C -0.073 4.073 18 C -0.075 4.075 19 C -0.102 4.102 20 C -0.168 4.168 21 C 0.076 3.924 22 F -0.120 7.120 23 C -0.169 4.169 24 C -0.095 4.095 25 C -0.161 4.161 26 C -0.177 4.177 27 C -0.151 4.151 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.230 0.770 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.900 1.741 16.916 18.000 hybrid contribution -0.207 1.241 -0.713 1.447 sum 5.693 2.982 16.203 17.431 Atomic orbital electron populations 1.22249 0.99642 0.98287 1.01844 1.20914 0.91960 0.87335 0.98135 1.43542 1.74586 1.10077 1.01839 1.18980 1.28163 0.97373 0.94994 0.92450 1.25428 0.95641 0.99466 0.97465 1.69869 1.30001 1.14433 1.38789 0.86453 0.78951 0.79055 0.82778 1.20542 1.21523 1.20685 1.20982 0.89362 1.01457 0.86761 1.22404 1.02807 0.94701 0.82813 1.46036 1.14358 1.51315 1.24500 1.19627 0.83125 0.79877 0.85289 1.90675 1.37743 1.44656 1.68731 1.20977 1.01168 0.91226 0.93936 1.19480 0.94426 0.93598 1.00044 1.20909 0.96590 0.94196 0.98466 1.21125 0.99264 0.93676 1.02692 1.17750 0.95434 0.77330 1.01849 1.91499 1.95387 1.30757 1.94383 1.21132 0.96768 0.96263 1.02713 1.20889 0.99514 0.92017 0.97091 1.23021 0.97667 0.98369 0.97046 1.22813 0.95830 0.97677 1.01373 1.22856 0.95937 0.97702 0.98573 0.95138 0.93973 0.92631 0.93617 0.95291 0.93424 0.95449 0.88586 0.91659 0.93294 0.76978 0.84627 0.84552 0.84699 0.84900 0.88824 0.90543 0.89742 0.90964 0.89611 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 16 2 C 0.14 2.99 6.39 -4.04 -0.03 2.96 16 3 N -0.58 -14.01 2.38 -173.24 -0.41 -14.42 16 4 C -0.26 -7.09 9.41 -15.06 -0.14 -7.24 16 5 H 0.06 1.55 7.86 -52.49 -0.41 1.14 16 6 C 0.02 0.57 5.13 -17.43 -0.09 0.48 16 7 N -0.89 -24.68 11.42 55.49 0.63 -24.05 16 8 Si 0.90 21.41 29.57 -169.99 -5.03 16.38 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.14 3.12 5.41 -4.04 -0.02 3.10 16 13 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 14 N -0.71 -11.74 5.53 -60.29 -0.33 -12.08 16 15 C 0.54 8.62 6.47 -10.99 -0.07 8.55 16 16 O -0.54 -10.65 15.91 5.56 0.09 -10.56 16 17 C -0.07 -0.82 0.91 -156.00 -0.14 -0.96 16 18 C -0.07 -0.85 4.78 -104.62 -0.50 -1.35 16 19 C -0.08 -0.85 9.02 -39.59 -0.36 -1.20 16 20 C -0.15 -1.58 10.03 -39.51 -0.40 -1.97 16 21 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 22 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 23 C -0.15 -1.71 10.03 -39.51 -0.40 -2.10 16 24 C -0.08 -0.90 9.38 -39.60 -0.37 -1.27 16 25 C -0.12 -1.14 6.20 -25.92 -0.16 -1.30 16 26 C -0.14 -1.35 7.81 -25.92 -0.20 -1.55 16 27 C -0.11 -1.19 6.72 -25.92 -0.17 -1.36 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 32 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 35 H 0.10 2.40 5.71 -51.93 -0.30 2.10 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 5.77 8.45 -40.82 -0.34 5.43 16 39 H 0.14 1.08 7.02 -52.49 -0.37 0.71 16 40 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.13 1.48 8.03 -52.49 -0.42 1.06 16 43 H 0.09 0.69 7.44 -51.93 -0.39 0.30 16 44 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.05 7.34 -51.93 -0.38 0.67 16 48 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -30.38 398.26 -9.64 -40.02 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.65 Total: 5.69 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.98 Total: -5.23 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.11 Total: -50.55 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.38 -9.64 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714587351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.016 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds