Wall clock time and date at job start Tue Mar 31 2020 18:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47622 * 2 1 4 4 C 1.36933 * 119.99960 * 265.62844 * 3 2 1 5 5 H 1.08002 * 120.00390 * 314.93838 * 4 3 2 6 6 C 1.38816 * 120.00021 * 134.93927 * 4 3 2 7 7 N 1.31615 * 119.99849 * 348.46401 * 6 4 3 8 8 Si 1.86804 * 120.00185 * 168.46737 * 6 4 3 9 9 H 1.48503 * 109.47027 * 59.99845 * 8 6 4 10 10 H 1.48496 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46960 * 299.99951 * 8 6 4 12 12 C 1.46501 * 119.99938 * 85.62074 * 3 2 1 13 13 C 1.52998 * 109.46618 * 90.00408 * 12 3 2 14 14 N 1.46500 * 109.47136 * 179.97438 * 13 12 3 15 15 C 1.34780 * 120.00367 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99639 * 5.15030 * 15 14 13 17 17 C 1.50697 * 120.00020 * 185.15645 * 15 14 13 18 18 C 1.50703 * 112.84807 * 298.39195 * 17 15 14 19 19 C 1.38246 * 119.96920 * 102.94802 * 18 17 15 20 20 C 1.38201 * 120.02329 * 179.97438 * 19 18 17 21 21 C 1.38458 * 119.97458 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02328 * 179.97438 * 21 20 19 23 23 C 1.38458 * 119.94834 * 359.97438 * 21 20 19 24 24 C 1.38201 * 119.97502 * 0.02562 * 23 21 20 25 25 C 1.53780 * 113.69612 * 69.66413 * 17 15 14 26 26 C 1.53788 * 87.07882 * 89.12590 * 25 17 15 27 27 C 1.53777 * 87.08027 * 25.43529 * 26 25 17 28 28 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46472 * 299.99846 * 1 2 3 30 30 H 1.08997 * 109.46696 * 59.99862 * 1 2 3 31 31 H 1.09005 * 109.47135 * 240.00173 * 2 1 3 32 32 H 1.09001 * 109.47412 * 120.00217 * 2 1 3 33 33 H 0.97003 * 119.99887 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47194 * 330.01060 * 12 3 2 35 35 H 1.08998 * 109.47354 * 210.00167 * 12 3 2 36 36 H 1.09002 * 109.47329 * 60.00366 * 13 12 3 37 37 H 1.09000 * 109.47708 * 300.00306 * 13 12 3 38 38 H 0.97004 * 119.99749 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.99207 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.01215 * 180.27588 * 20 19 18 41 41 H 1.08007 * 120.01025 * 180.02562 * 23 21 20 42 42 H 1.07998 * 119.98349 * 180.02562 * 24 23 21 43 43 H 1.08990 * 113.61875 * 203.67313 * 25 17 15 44 44 H 1.09002 * 113.60985 * 334.58505 * 25 17 15 45 45 H 1.09004 * 113.61254 * 270.88808 * 26 25 17 46 46 H 1.09001 * 113.68729 * 139.99806 * 26 25 17 47 47 H 1.09006 * 113.61561 * 220.01948 * 27 26 25 48 48 H 1.08993 * 113.69331 * 89.12579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3319 1.9965 -1.1824 5 1 2.9109 1.4713 -1.9277 6 6 1.9056 3.2954 -1.4233 7 7 1.0181 3.8547 -0.6285 8 14 2.5914 4.2495 -2.8755 9 1 2.2755 3.5288 -4.1349 10 1 1.9794 5.6019 -2.9127 11 1 4.0642 4.3758 -2.7336 12 6 2.1713 2.1040 1.2650 13 6 3.5806 1.8762 1.8154 14 7 3.7338 2.5995 3.0801 15 6 4.9016 2.5445 3.7508 16 8 5.8546 1.9745 3.2632 17 6 5.0231 3.1912 5.1065 18 6 4.7933 4.6801 5.0674 19 6 3.5889 5.2045 5.4981 20 6 3.3771 6.5698 5.4631 21 6 4.3716 7.4123 4.9961 22 9 4.1655 8.7471 4.9610 23 6 5.5775 6.8859 4.5650 24 6 5.7869 5.5203 4.6008 25 6 4.2246 2.4734 6.2074 26 6 5.4774 1.6140 6.4463 27 6 6.2933 2.7839 5.8717 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.7198 4.7623 -0.7970 34 1 1.4373 1.7387 1.9833 35 1 2.0152 3.1694 1.0959 36 1 4.3147 2.2415 1.0972 37 1 3.7368 0.8107 1.9845 38 1 2.9947 3.1180 3.4349 39 1 2.8131 4.5471 5.8620 40 1 2.4378 6.9796 5.8038 41 1 6.3541 7.5422 4.2008 42 1 6.7276 5.1096 4.2650 43 1 3.9684 3.1153 7.0501 44 1 3.3725 1.9077 5.8304 45 1 5.5129 0.7139 5.8325 46 1 5.6788 1.4166 7.4992 47 1 7.1114 2.4691 5.2237 48 1 6.6035 3.5116 6.6216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714587351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:04 Heat of formation + Delta-G solvation = -40.587904 kcal Electronic energy + Delta-G solvation = -29246.954794 eV Core-core repulsion = 25216.539737 eV Total energy + Delta-G solvation = -4030.415057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.91770 -42.05164 -39.75650 -38.40508 -37.78351 -35.66365 -33.76418 -32.17423 -32.04425 -31.29644 -29.37987 -27.04267 -26.76577 -25.73983 -24.09491 -23.75791 -22.92648 -22.29443 -21.80598 -20.13429 -18.77495 -18.60144 -18.05305 -17.28866 -17.11243 -16.92236 -16.81778 -16.60059 -16.16069 -15.75788 -15.56791 -15.42982 -15.27158 -14.59488 -14.53496 -14.39001 -14.22035 -14.08836 -13.94590 -13.65397 -13.44249 -13.12869 -13.01363 -12.86887 -12.80913 -12.60381 -12.43471 -12.30330 -12.06727 -12.04773 -11.89122 -11.73301 -11.48089 -11.47195 -11.23985 -10.92739 -10.58975 -10.09147 -10.04825 -9.54424 -8.49414 -7.83915 -5.59367 0.06215 0.24610 1.43241 1.45537 1.50951 1.57838 2.14194 2.47826 2.58170 3.25100 3.26091 3.37671 3.56910 3.64454 3.69056 3.81286 3.87817 3.95168 3.97057 4.31378 4.35184 4.40453 4.43864 4.47607 4.53049 4.76019 4.80282 4.83744 4.84323 4.90945 4.93337 4.97208 5.03991 5.06936 5.09137 5.13557 5.14836 5.24370 5.24551 5.32119 5.42393 5.47148 5.48350 5.58528 5.63728 5.79591 5.87538 6.49060 6.59309 7.17127 7.24438 7.80731 8.36779 9.10177 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.003865 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.850484 B = 7241.826656 C = 8987.089193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.276 4.276 5 H 0.049 0.951 6 C -0.020 4.020 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.284 1.284 12 C 0.151 3.849 13 C 0.120 3.880 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.582 6.582 17 C -0.069 4.069 18 C -0.081 4.081 19 C -0.078 4.078 20 C -0.149 4.149 21 C 0.078 3.922 22 F -0.149 7.149 23 C -0.157 4.157 24 C -0.090 4.090 25 C -0.111 4.111 26 C -0.138 4.138 27 C -0.111 4.111 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.253 0.747 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.048 0.952 38 H 0.409 0.591 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 1.731 19.354 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 N -0.319 5.319 4 C -0.406 4.406 5 H 0.066 0.934 6 C -0.219 4.219 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.024 3.976 13 C -0.006 4.006 14 N -0.358 5.358 15 C 0.322 3.678 16 O -0.462 6.462 17 C -0.072 4.072 18 C -0.081 4.081 19 C -0.096 4.096 20 C -0.167 4.167 21 C 0.059 3.941 22 F -0.128 7.128 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.148 4.148 26 C -0.175 4.175 27 C -0.149 4.149 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.244 0.756 39 H 0.181 0.819 40 H 0.174 0.826 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.060 1.492 18.961 19.681 hybrid contribution 0.095 1.270 -1.341 1.849 sum 5.155 2.762 17.620 18.565 Atomic orbital electron populations 1.22088 0.98500 1.00070 1.00075 1.21051 0.92812 0.85786 0.99142 1.43781 1.75138 1.11240 1.01740 1.19132 1.27867 0.97831 0.95817 0.93392 1.25974 0.96138 1.00211 0.99579 1.69979 1.30946 1.14370 1.39934 0.85627 0.77950 0.77884 0.80647 1.19874 1.21479 1.21055 1.20813 0.90592 0.99666 0.86504 1.21860 1.00448 0.94726 0.83601 1.45885 1.15295 1.51251 1.23342 1.20402 0.81934 0.78968 0.86546 1.90655 1.39006 1.46469 1.70093 1.20895 1.03189 0.91343 0.91762 1.19519 0.94977 0.93094 1.00543 1.21190 0.96495 0.94360 0.97513 1.21411 0.99644 0.93777 1.01889 1.18018 0.96145 0.77263 1.02717 1.91477 1.95455 1.31352 1.94538 1.21271 0.97160 0.96397 1.02732 1.20981 0.99859 0.92315 0.97617 1.23092 0.97146 0.98014 0.96531 1.22787 0.95848 0.96475 1.02429 1.22912 0.94762 0.98722 0.98510 0.91528 0.94410 0.95587 0.93797 0.93052 0.93780 0.93799 0.91327 0.95428 0.93389 0.75575 0.81866 0.82568 0.83782 0.85216 0.85765 0.90365 0.91953 0.88377 0.92051 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.24 71.98 0.74 -4.89 16 2 C 0.14 5.61 6.39 86.38 0.55 6.16 16 3 N -0.60 -28.96 2.38 -702.00 -1.67 -30.63 16 4 C -0.28 -14.96 9.41 84.04 0.79 -14.17 16 5 H 0.05 2.65 7.86 -2.91 -0.02 2.62 16 6 C -0.02 -1.11 5.13 84.86 0.44 -0.67 16 7 N -0.91 -50.96 11.42 21.65 0.25 -50.71 16 8 Si 0.95 44.47 29.57 68.60 2.03 46.50 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.15 6.67 5.41 86.38 0.47 7.14 16 13 C 0.12 4.87 6.00 86.38 0.52 5.39 16 14 N -0.71 -23.04 5.53 -463.06 -2.56 -25.60 16 15 C 0.53 17.07 6.47 87.66 0.57 17.63 16 16 O -0.58 -23.54 15.91 -3.03 -0.05 -23.59 16 17 C -0.07 -1.50 0.91 -53.15 -0.05 -1.55 16 18 C -0.08 -1.69 4.78 -19.86 -0.09 -1.78 16 19 C -0.08 -1.35 9.02 22.26 0.20 -1.15 16 20 C -0.15 -2.80 10.03 22.31 0.22 -2.58 16 21 C 0.08 1.76 7.30 22.37 0.16 1.92 16 22 F -0.15 -3.67 17.27 44.97 0.78 -2.89 16 23 C -0.16 -3.48 10.03 22.31 0.22 -3.25 16 24 C -0.09 -2.03 9.38 22.26 0.21 -1.82 16 25 C -0.11 -1.68 6.20 31.12 0.19 -1.49 16 26 C -0.14 -2.35 7.81 31.12 0.24 -2.11 16 27 C -0.11 -2.19 6.72 31.12 0.21 -1.98 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.79 8.00 -2.38 -0.02 1.77 16 32 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 35 H 0.07 3.47 5.71 -2.39 -0.01 3.45 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 11.36 8.45 -92.71 -0.78 10.58 16 39 H 0.16 1.88 7.02 -2.91 -0.02 1.86 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.13 2.93 8.03 -2.91 -0.02 2.91 16 43 H 0.12 1.20 7.44 -2.39 -0.02 1.19 16 44 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.52 7.34 -2.38 -0.02 1.50 16 48 H 0.11 1.66 8.09 -2.39 -0.02 1.64 16 Total: -1.00 -67.12 398.26 4.54 -62.58 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.17 Total: 23.53 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.59 Total: 0.81 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.98 Total: -106.95 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.12 4.54 -62.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714587351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.996 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds