Wall clock time and date at job start Tue Mar 31 2020 17:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47317 * 2 1 4 4 N 1.46489 * 109.47636 * 120.01064 * 2 1 3 5 5 C 1.36941 * 120.00145 * 274.99999 * 4 2 1 6 6 H 1.08003 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00206 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47298 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47029 * 119.99757 * 9 7 5 12 12 H 1.48493 * 109.47080 * 239.99629 * 9 7 5 13 13 C 1.53002 * 109.46825 * 240.01015 * 2 1 3 14 14 H 1.09000 * 109.47627 * 174.99812 * 13 2 1 15 15 C 1.53000 * 109.47091 * 295.00024 * 13 2 1 16 16 N 1.46505 * 109.47377 * 54.99831 * 13 2 1 17 17 C 1.34777 * 120.00058 * 155.00229 * 16 13 2 18 18 O 1.21281 * 120.00176 * 4.99049 * 17 16 13 19 19 C 1.50701 * 119.99940 * 184.99047 * 17 16 13 20 20 C 1.50701 * 112.85018 * 315.21007 * 19 17 16 21 21 C 1.38266 * 119.98539 * 102.81013 * 20 19 17 22 22 C 1.38232 * 120.04974 * 180.02562 * 21 20 19 23 23 C 1.38217 * 120.02342 * 0.02562 * 22 21 20 24 24 C 1.38437 * 119.97575 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.02383 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98810 * 282.54448 * 20 19 17 27 27 C 1.53780 * 113.61399 * 184.01308 * 19 17 16 28 28 C 1.53779 * 87.08047 * 270.79868 * 27 19 17 29 29 C 1.53778 * 87.17717 * 334.52697 * 28 27 19 30 30 H 1.09005 * 109.46691 * 299.98990 * 1 2 3 31 31 H 1.09001 * 109.47498 * 59.99076 * 1 2 3 32 32 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00671 * 94.99248 * 4 2 1 34 34 H 0.97002 * 120.00095 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47093 * 299.99595 * 15 13 2 36 36 H 1.08999 * 109.47481 * 59.99767 * 15 13 2 37 37 H 1.09004 * 109.47274 * 180.02562 * 15 13 2 38 38 H 0.97005 * 119.99772 * 334.99857 * 16 13 2 39 39 H 1.07997 * 119.97615 * 0.02884 * 21 20 19 40 40 H 1.08000 * 119.98745 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00858 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00843 * 359.97438 * 26 20 19 43 43 H 1.09001 * 113.61101 * 156.24764 * 27 19 17 44 44 H 1.09003 * 113.61260 * 25.35281 * 27 19 17 45 45 H 1.09004 * 113.61299 * 89.11750 * 28 27 19 46 46 H 1.08996 * 113.61207 * 219.93427 * 28 27 19 47 47 H 1.08996 * 113.61955 * 140.01835 * 29 28 27 48 48 H 1.08999 * 113.61537 * 270.92948 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 1.1959 5 6 2.1493 -0.0078 2.3757 6 1 1.8927 1.0401 2.4243 7 6 2.6126 -0.6623 3.5088 8 7 2.9256 -1.9392 3.4494 9 14 2.7917 0.2696 5.1178 10 1 2.3777 1.6820 4.9207 11 1 1.9315 -0.3591 6.1523 12 1 4.2088 0.2267 5.5595 13 6 2.0399 -0.7211 -1.2494 14 1 3.1262 -0.6442 -1.2955 15 6 1.6351 -2.1953 -1.1884 16 7 1.4557 -0.1033 -2.4425 17 6 2.0910 -0.1933 -3.6277 18 8 3.0986 -0.8611 -3.7265 19 6 1.5494 0.5359 -4.8302 20 6 0.0573 0.3884 -4.9810 21 6 -0.7800 1.4268 -4.6172 22 6 -2.1490 1.2927 -4.7544 23 6 -2.6823 0.1200 -5.2551 24 6 -1.8449 -0.9203 -5.6197 25 9 -2.3650 -2.0669 -6.1098 26 6 -0.4733 -0.7824 -5.4879 27 6 2.3303 0.2541 -6.1247 28 6 3.2313 1.4415 -5.7466 29 6 2.0404 1.9917 -4.9442 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6320 1.1523 34 1 3.2491 -2.3966 4.2413 35 1 2.0698 -2.6550 -0.3007 36 1 0.5488 -2.2722 -1.1424 37 1 1.9988 -2.7091 -2.0783 38 1 0.6116 0.3705 -2.3794 39 1 -0.3642 2.3433 -4.2255 40 1 -2.8021 2.1043 -4.4695 41 1 -3.7518 0.0157 -5.3627 42 1 0.1813 -1.5916 -5.7764 43 1 1.7474 0.4194 -7.0309 44 1 2.8479 -0.7051 -6.1223 45 1 4.0838 1.1628 -5.1271 46 1 3.5111 2.0650 -6.5958 47 1 2.3243 2.4342 -3.9895 48 1 1.3785 2.6311 -5.5282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717420755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:06 Heat of formation + Delta-G solvation = -27.286398 kcal Electronic energy + Delta-G solvation = -29567.742449 eV Core-core repulsion = 25537.904188 eV Total energy + Delta-G solvation = -4029.838261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.11959 -41.22607 -38.98758 -37.83826 -36.45272 -33.94437 -32.06409 -31.47917 -30.78955 -29.39335 -28.21484 -26.49192 -26.03629 -24.41874 -23.44927 -22.79922 -22.27139 -21.40229 -19.44999 -18.97171 -18.09704 -17.42960 -16.81842 -16.49279 -16.11949 -15.85068 -15.70449 -15.49988 -14.89838 -14.68310 -14.32899 -14.21896 -14.01977 -13.59742 -13.53789 -13.38360 -12.89767 -12.72212 -12.62228 -12.43333 -12.21341 -12.05692 -11.86151 -11.71851 -11.63911 -11.30615 -11.13568 -10.96527 -10.85246 -10.72855 -10.56200 -10.46688 -10.25449 -9.98237 -9.88930 -9.66902 -9.18713 -8.96445 -8.92616 -8.79634 -7.01989 -5.79974 -3.09577 0.81218 0.88873 2.64343 3.14412 3.34615 3.41651 3.47264 3.49359 3.84970 4.22551 4.26963 4.36442 4.54809 4.56423 4.64081 4.70374 4.75618 4.85412 5.08033 5.20212 5.36518 5.41718 5.46760 5.47814 5.52154 5.62376 5.63884 5.69846 5.73170 5.78355 5.82419 5.84772 5.87532 5.99310 6.06637 6.12231 6.15292 6.19904 6.29383 6.39596 6.46951 6.56644 6.63644 6.70295 6.91006 7.06118 7.67212 7.68286 8.34285 8.38837 9.49806 10.05208 10.40023 11.42671 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003039 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.224226 B = 9212.302318 C = 9934.504773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.137 3.863 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.712 5.712 17 C 0.540 3.460 18 O -0.533 6.533 19 C -0.073 4.073 20 C -0.040 4.040 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.156 4.156 24 C 0.102 3.898 25 F -0.140 7.140 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.138 4.138 29 C -0.119 4.119 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.398 0.602 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 7.957 -22.359 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.218 1.218 13 C 0.032 3.968 14 H 0.105 0.895 15 C -0.217 4.217 16 N -0.364 5.364 17 C 0.324 3.676 18 O -0.409 6.409 19 C -0.076 4.076 20 C -0.040 4.040 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.174 4.174 24 C 0.083 3.917 25 F -0.118 7.118 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.176 4.176 29 C -0.157 4.157 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.234 0.766 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.363 7.550 -22.262 24.951 hybrid contribution -0.544 0.057 0.958 1.103 sum -8.907 7.608 -21.304 24.312 Atomic orbital electron populations 1.22531 0.99349 1.01283 0.99650 1.20347 0.92148 0.95523 0.86175 0.93106 1.42458 1.78189 1.10807 1.04821 1.19266 1.36815 0.93961 0.87146 0.91078 1.24741 1.01943 0.95983 0.98097 1.69665 1.50677 1.08665 1.28883 0.86123 0.77344 0.78767 0.83961 1.20560 1.21863 1.21844 1.21357 0.98824 0.92980 0.83636 0.89491 1.22133 1.01469 0.95833 1.02295 1.46203 1.25584 1.56383 1.08242 1.19589 0.83792 0.80742 0.83478 1.90701 1.25374 1.40436 1.84391 1.21093 0.90983 0.99195 0.96376 1.19326 0.93853 0.93352 0.97472 1.21165 0.93204 0.99188 1.00836 1.21015 0.95106 0.96910 0.97357 1.21185 1.00382 0.93450 1.02421 1.17669 0.91822 0.82976 0.99239 1.91512 1.87187 1.47758 1.85354 1.20991 0.93377 0.99175 1.02473 1.22848 0.97067 1.00663 0.94345 1.22826 0.97264 0.97223 1.00266 1.23020 0.98077 0.92912 1.01672 0.92354 0.95000 0.92823 0.77765 0.93472 0.90523 0.92616 0.93033 0.76622 0.84846 0.84714 0.84742 0.84712 0.89398 0.89707 0.89254 0.90964 0.90451 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.01 37.16 0.33 -2.50 16 2 C 0.17 3.23 2.93 -67.94 -0.20 3.03 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.72 -17.51 5.03 -53.43 -0.27 -17.78 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 9 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.14 2.36 2.58 -67.93 -0.18 2.19 16 14 H 0.09 1.71 7.65 -51.93 -0.40 1.31 16 15 C -0.16 -2.77 9.00 37.16 0.33 -2.43 16 16 N -0.71 -10.00 4.90 -53.80 -0.26 -10.27 16 17 C 0.54 7.62 6.68 -10.98 -0.07 7.55 16 18 O -0.53 -9.41 15.27 5.56 0.08 -9.33 16 19 C -0.07 -0.75 1.00 -155.85 -0.16 -0.91 16 20 C -0.04 -0.37 4.17 -104.63 -0.44 -0.81 16 21 C -0.13 -0.98 8.85 -39.57 -0.35 -1.33 16 22 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 23 C -0.16 -1.30 10.03 -39.52 -0.40 -1.70 16 24 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 25 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 26 C -0.14 -1.46 9.36 -39.51 -0.37 -1.83 16 27 C -0.11 -1.07 6.63 -25.92 -0.17 -1.24 16 28 C -0.14 -1.26 7.71 -25.92 -0.20 -1.46 16 29 C -0.12 -1.00 6.21 -25.77 -0.16 -1.16 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 32 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 33 H 0.39 9.99 5.77 -40.82 -0.24 9.76 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 36 H 0.05 0.92 6.56 -51.93 -0.34 0.57 16 37 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.40 4.88 5.84 -40.82 -0.24 4.64 16 39 H 0.13 0.82 7.03 -52.49 -0.37 0.45 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.13 1.41 8.02 -52.49 -0.42 0.99 16 43 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 45 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.69 8.10 -51.93 -0.42 0.26 16 48 H 0.09 0.61 7.46 -51.93 -0.39 0.22 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -31.38 387.11 -8.92 -40.31 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.10 Total: 12.74 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.95 Total: -9.97 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.19 Total: -55.11 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.38 -8.92 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717420755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.021 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds