Wall clock time and date at job start Tue Mar 31 2020 17:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47317 * 2 1 4 4 N 1.46489 * 109.47636 * 120.01064 * 2 1 3 5 5 C 1.36941 * 120.00145 * 274.99999 * 4 2 1 6 6 H 1.08003 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00206 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47298 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47029 * 119.99757 * 9 7 5 12 12 H 1.48493 * 109.47080 * 239.99629 * 9 7 5 13 13 C 1.53002 * 109.46825 * 240.01015 * 2 1 3 14 14 H 1.09000 * 109.47627 * 174.99812 * 13 2 1 15 15 C 1.53000 * 109.47091 * 295.00024 * 13 2 1 16 16 N 1.46505 * 109.47377 * 54.99831 * 13 2 1 17 17 C 1.34777 * 120.00058 * 155.00229 * 16 13 2 18 18 O 1.21281 * 120.00176 * 4.99049 * 17 16 13 19 19 C 1.50701 * 119.99940 * 184.99047 * 17 16 13 20 20 C 1.50701 * 112.85018 * 315.21007 * 19 17 16 21 21 C 1.38266 * 119.98539 * 102.81013 * 20 19 17 22 22 C 1.38232 * 120.04974 * 180.02562 * 21 20 19 23 23 C 1.38217 * 120.02342 * 0.02562 * 22 21 20 24 24 C 1.38437 * 119.97575 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.02383 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98810 * 282.54448 * 20 19 17 27 27 C 1.53780 * 113.61399 * 184.01308 * 19 17 16 28 28 C 1.53779 * 87.08047 * 270.79868 * 27 19 17 29 29 C 1.53778 * 87.17717 * 334.52697 * 28 27 19 30 30 H 1.09005 * 109.46691 * 299.98990 * 1 2 3 31 31 H 1.09001 * 109.47498 * 59.99076 * 1 2 3 32 32 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00671 * 94.99248 * 4 2 1 34 34 H 0.97002 * 120.00095 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47093 * 299.99595 * 15 13 2 36 36 H 1.08999 * 109.47481 * 59.99767 * 15 13 2 37 37 H 1.09004 * 109.47274 * 180.02562 * 15 13 2 38 38 H 0.97005 * 119.99772 * 334.99857 * 16 13 2 39 39 H 1.07997 * 119.97615 * 0.02884 * 21 20 19 40 40 H 1.08000 * 119.98745 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00858 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00843 * 359.97438 * 26 20 19 43 43 H 1.09001 * 113.61101 * 156.24764 * 27 19 17 44 44 H 1.09003 * 113.61260 * 25.35281 * 27 19 17 45 45 H 1.09004 * 113.61299 * 89.11750 * 28 27 19 46 46 H 1.08996 * 113.61207 * 219.93427 * 28 27 19 47 47 H 1.08996 * 113.61955 * 140.01835 * 29 28 27 48 48 H 1.08999 * 113.61537 * 270.92948 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 1.1959 5 6 2.1493 -0.0078 2.3757 6 1 1.8927 1.0401 2.4243 7 6 2.6126 -0.6623 3.5088 8 7 2.9256 -1.9392 3.4494 9 14 2.7917 0.2696 5.1178 10 1 2.3777 1.6820 4.9207 11 1 1.9315 -0.3591 6.1523 12 1 4.2088 0.2267 5.5595 13 6 2.0399 -0.7211 -1.2494 14 1 3.1262 -0.6442 -1.2955 15 6 1.6351 -2.1953 -1.1884 16 7 1.4557 -0.1033 -2.4425 17 6 2.0910 -0.1933 -3.6277 18 8 3.0986 -0.8611 -3.7265 19 6 1.5494 0.5359 -4.8302 20 6 0.0573 0.3884 -4.9810 21 6 -0.7800 1.4268 -4.6172 22 6 -2.1490 1.2927 -4.7544 23 6 -2.6823 0.1200 -5.2551 24 6 -1.8449 -0.9203 -5.6197 25 9 -2.3650 -2.0669 -6.1098 26 6 -0.4733 -0.7824 -5.4879 27 6 2.3303 0.2541 -6.1247 28 6 3.2313 1.4415 -5.7466 29 6 2.0404 1.9917 -4.9442 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2491 -1.6320 1.1523 34 1 3.2491 -2.3966 4.2413 35 1 2.0698 -2.6550 -0.3007 36 1 0.5488 -2.2722 -1.1424 37 1 1.9988 -2.7091 -2.0783 38 1 0.6116 0.3705 -2.3794 39 1 -0.3642 2.3433 -4.2255 40 1 -2.8021 2.1043 -4.4695 41 1 -3.7518 0.0157 -5.3627 42 1 0.1813 -1.5916 -5.7764 43 1 1.7474 0.4194 -7.0309 44 1 2.8479 -0.7051 -6.1223 45 1 4.0838 1.1628 -5.1271 46 1 3.5111 2.0650 -6.5958 47 1 2.3243 2.4342 -3.9895 48 1 1.3785 2.6311 -5.5282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717420755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:05 Heat of formation + Delta-G solvation = -45.260685 kcal Electronic energy + Delta-G solvation = -29568.521872 eV Core-core repulsion = 25537.904188 eV Total energy + Delta-G solvation = -4030.617684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.90544 -42.15132 -39.96671 -38.90214 -37.71309 -35.61445 -33.63559 -32.36405 -31.52074 -30.93247 -29.83311 -27.36775 -26.75898 -26.17448 -24.97623 -23.56224 -23.06609 -22.42051 -20.75495 -20.21984 -19.39897 -18.86861 -17.64994 -17.21114 -17.01596 -16.87408 -16.63576 -16.58560 -16.40368 -16.04959 -15.76596 -15.41001 -15.07538 -14.81953 -14.68843 -14.35051 -14.28718 -13.94457 -13.65418 -13.38252 -13.27134 -13.13154 -13.00364 -12.85539 -12.83598 -12.68360 -12.64075 -12.42094 -12.07979 -12.07343 -11.90657 -11.67791 -11.62302 -11.42880 -11.31248 -10.96932 -10.90393 -10.13159 -9.89464 -9.62876 -9.03633 -7.93333 -5.22470 0.14538 0.23353 1.48710 1.49568 1.53337 1.59285 2.06389 2.57473 2.61921 3.12803 3.40860 3.50196 3.53325 3.62746 3.69464 3.85483 3.88618 3.97064 3.99370 4.04998 4.12299 4.25712 4.29538 4.45213 4.48821 4.57579 4.66456 4.76709 4.81742 4.83704 4.89030 4.93538 4.98371 5.02812 5.04684 5.11136 5.12325 5.16701 5.19494 5.22773 5.38412 5.44922 5.48752 5.50351 5.55629 5.60638 5.93018 6.28501 6.53030 7.20903 7.35143 8.08952 8.31996 9.30544 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003039 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.224226 B = 9212.302318 C = 9934.504773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.734 5.734 5 C -0.237 4.237 6 H 0.080 0.920 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.297 1.297 13 C 0.151 3.849 14 H 0.058 0.942 15 C -0.150 4.150 16 N -0.701 5.701 17 C 0.536 3.464 18 O -0.574 6.574 19 C -0.070 4.070 20 C -0.047 4.047 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.154 4.154 24 C 0.078 3.922 25 F -0.154 7.154 26 C -0.155 4.155 27 C -0.111 4.111 28 C -0.141 4.141 29 C -0.106 4.106 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.378 11.297 -23.377 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.070 0.930 4 N -0.377 5.377 5 C -0.368 4.368 6 H 0.098 0.902 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.225 1.225 13 C 0.045 3.955 14 H 0.076 0.924 15 C -0.208 4.208 16 N -0.354 5.354 17 C 0.323 3.677 18 O -0.454 6.454 19 C -0.073 4.073 20 C -0.047 4.047 21 C -0.136 4.136 22 C -0.095 4.095 23 C -0.172 4.172 24 C 0.059 3.941 25 F -0.132 7.132 26 C -0.174 4.174 27 C -0.149 4.149 28 C -0.178 4.178 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.176 0.824 40 H 0.186 0.814 41 H 0.169 0.831 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.675 10.947 -23.324 27.889 hybrid contribution 0.148 -0.974 1.158 1.520 sum -10.527 9.973 -22.166 26.488 Atomic orbital electron populations 1.22348 0.96771 1.01389 1.01157 1.20510 0.93732 0.94987 0.84915 0.93035 1.42669 1.78594 1.10519 1.05868 1.19669 1.34822 0.94352 0.87986 0.90192 1.25541 1.02917 0.96848 1.01483 1.69827 1.52653 1.10314 1.29352 0.85096 0.76589 0.78356 0.79857 1.18696 1.22230 1.22485 1.20904 0.97285 0.92887 0.84443 0.92362 1.22020 1.01980 0.95846 1.00949 1.45976 1.25926 1.56223 1.07286 1.20322 0.83024 0.80086 0.84266 1.90688 1.27334 1.42244 1.85098 1.20974 0.91741 1.00223 0.94363 1.19240 0.93176 0.93774 0.98532 1.21470 0.93339 0.99259 0.99555 1.21400 0.95263 0.97046 0.95837 1.21486 1.01122 0.93148 1.01456 1.17937 0.92144 0.83368 1.00624 1.91473 1.87316 1.48683 1.85765 1.20978 0.93509 0.99460 1.03459 1.22889 0.97278 0.99705 0.95030 1.22794 0.96706 0.97417 1.00873 1.23088 0.97686 0.91624 1.01909 0.93439 0.90834 0.93438 0.79082 0.94133 0.92844 0.91347 0.93354 0.75150 0.82365 0.81442 0.83092 0.86205 0.87219 0.92306 0.92047 0.88645 0.90594 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.01 71.98 0.65 -4.28 16 2 C 0.17 6.28 2.93 44.99 0.13 6.41 16 3 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 4 N -0.73 -36.13 5.03 -322.96 -1.63 -37.76 16 5 C -0.24 -12.80 9.93 84.03 0.83 -11.96 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 9 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 13 C 0.15 5.24 2.58 44.99 0.12 5.36 16 14 H 0.06 2.38 7.65 -2.39 -0.02 2.36 16 15 C -0.15 -5.34 9.00 71.98 0.65 -4.69 16 16 N -0.70 -18.93 4.90 -442.52 -2.17 -21.09 16 17 C 0.54 15.03 6.68 87.66 0.59 15.61 16 18 O -0.57 -21.14 15.27 -3.03 -0.05 -21.19 16 19 C -0.07 -1.32 1.00 -53.05 -0.05 -1.38 16 20 C -0.05 -0.77 4.17 -19.87 -0.08 -0.85 16 21 C -0.12 -1.31 8.85 22.27 0.20 -1.11 16 22 C -0.08 -0.75 10.04 22.26 0.22 -0.53 16 23 C -0.15 -2.09 10.03 22.31 0.22 -1.86 16 24 C 0.08 1.51 7.30 22.37 0.16 1.67 16 25 F -0.15 -3.47 17.27 44.97 0.78 -2.70 16 26 C -0.16 -3.06 9.36 22.31 0.21 -2.85 16 27 C -0.11 -2.05 6.63 31.12 0.21 -1.85 16 28 C -0.14 -2.36 7.71 31.12 0.24 -2.12 16 29 C -0.11 -1.45 6.21 31.21 0.19 -1.25 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.68 6.29 -2.39 -0.02 1.66 16 32 H 0.05 1.56 6.56 -2.39 -0.02 1.54 16 33 H 0.38 20.05 5.77 -92.71 -0.54 19.52 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.05 2.16 6.29 -2.38 -0.02 2.14 16 36 H 0.07 2.23 6.56 -2.39 -0.02 2.22 16 37 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.41 8.89 5.84 -92.70 -0.54 8.34 16 39 H 0.16 0.99 7.03 -2.91 -0.02 0.97 16 40 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.12 2.62 8.02 -2.91 -0.02 2.59 16 43 H 0.11 1.54 8.09 -2.39 -0.02 1.52 16 44 H 0.06 1.39 7.48 -2.39 -0.02 1.37 16 45 H 0.06 1.38 7.92 -2.38 -0.02 1.36 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 48 H 0.13 0.98 7.46 -2.39 -0.02 0.96 16 Total: -1.00 -70.96 387.11 4.11 -66.85 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.09 Total: 36.84 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.95 Total: -9.53 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.51 Total: -117.96 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.96 4.11 -66.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717420755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.587 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds