Wall clock time and date at job start Tue Mar 31 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47174 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00005 * 2 1 3 5 5 C 1.34770 * 120.00082 * 274.99626 * 4 2 1 6 6 O 1.21282 * 120.00115 * 354.91579 * 5 4 2 7 7 C 1.50703 * 120.00129 * 174.91090 * 5 4 2 8 8 C 1.50698 * 112.84690 * 55.72449 * 7 5 4 9 9 C 1.38268 * 119.98331 * 246.14141 * 8 7 5 10 10 C 1.38227 * 120.04755 * 180.02562 * 9 8 7 11 11 C 1.38213 * 120.02592 * 0.02562 * 10 9 8 12 12 C 1.38436 * 119.97601 * 359.97438 * 11 10 9 13 13 F 1.35102 * 120.02567 * 180.02562 * 12 11 10 14 14 C 1.38173 * 119.98955 * 65.87606 * 8 7 5 15 15 C 1.53781 * 113.61528 * 284.52792 * 7 5 4 16 16 C 1.54049 * 86.98771 * 270.83888 * 15 7 5 17 17 C 1.53778 * 87.07664 * 334.56722 * 16 15 7 18 18 C 1.53003 * 109.46963 * 239.99646 * 2 1 3 19 19 H 1.08995 * 109.47465 * 300.00176 * 18 2 1 20 20 C 1.53005 * 109.46963 * 180.02562 * 18 2 1 21 21 N 1.46500 * 109.46985 * 60.00368 * 18 2 1 22 22 C 1.36942 * 120.00020 * 204.99825 * 21 18 2 23 23 H 1.07996 * 119.99566 * 359.97438 * 22 21 18 24 24 C 1.38810 * 119.99700 * 179.97438 * 22 21 18 25 25 N 1.31628 * 119.99561 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00422 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47209 * 89.99754 * 26 24 22 28 28 H 1.48499 * 109.47078 * 210.00072 * 26 24 22 29 29 H 1.48497 * 109.46911 * 329.99530 * 26 24 22 30 30 H 1.08996 * 109.47289 * 300.00147 * 1 2 3 31 31 H 1.08997 * 109.46912 * 59.99934 * 1 2 3 32 32 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99957 * 95.27703 * 4 2 1 34 34 H 1.08000 * 119.97868 * 0.02832 * 9 8 7 35 35 H 1.07997 * 119.98706 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.01431 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.01217 * 359.97438 * 14 8 7 38 38 H 1.09004 * 113.61677 * 25.43113 * 15 7 5 39 39 H 1.08993 * 113.61558 * 156.33403 * 15 7 5 40 40 H 1.09001 * 113.62177 * 220.02042 * 16 15 7 41 41 H 1.08999 * 113.69182 * 89.12468 * 16 15 7 42 42 H 1.08998 * 113.62035 * 270.88082 * 17 16 15 43 43 H 1.09003 * 113.69294 * 139.98697 * 17 16 15 44 44 H 1.08997 * 109.46912 * 60.00420 * 20 18 2 45 45 H 1.09000 * 109.46465 * 180.02562 * 20 18 2 46 46 H 1.09002 * 109.46861 * 300.00120 * 20 18 2 47 47 H 0.97000 * 120.00071 * 24.99216 * 21 18 2 48 48 H 0.97002 * 119.99509 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.9475 1.1775 2.3907 7 6 2.5390 -0.7524 3.6135 8 6 3.8294 -1.5166 3.4664 9 6 3.8240 -2.8983 3.5180 10 6 5.0069 -3.6007 3.3837 11 6 6.1967 -2.9223 3.1981 12 6 6.2034 -1.5389 3.1462 13 9 7.3658 -0.8748 2.9643 14 6 5.0168 -0.8366 3.2743 15 6 1.3973 -1.5828 4.2233 16 6 1.0122 -0.3202 5.0175 17 6 2.4796 0.1184 4.8797 18 6 2.0400 -0.7213 -1.2492 19 1 1.6767 -1.7490 -1.2492 20 6 3.5701 -0.7219 -1.2489 21 7 1.5517 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6250 23 1 1.6781 -1.7616 -3.6735 24 6 0.9577 -0.0596 -4.7582 25 7 0.8315 -0.7164 -5.8919 26 14 0.5135 1.7529 -4.6744 27 1 1.7106 2.5712 -4.9943 28 1 -0.5623 2.0448 -5.6555 29 1 0.0390 2.0834 -3.3067 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2528 -1.6308 1.1516 34 1 2.8948 -3.4293 3.6634 35 1 5.0016 -4.6799 3.4247 36 1 7.1208 -3.4713 3.0928 37 1 5.0202 0.2425 3.2293 38 1 0.6447 -1.8900 3.4971 39 1 1.7421 -2.4048 4.8505 40 1 0.7124 -0.5252 6.0452 41 1 0.3112 0.3298 4.4938 42 1 3.1199 -0.2393 5.6860 43 1 2.6018 1.1836 4.6832 44 1 3.9330 -1.2360 -0.3589 45 1 3.9333 -1.2354 -2.1391 46 1 3.9337 0.3057 -1.2487 47 1 1.3210 0.9104 -2.4019 48 1 0.5075 -0.2592 -6.6837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717420757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:13 Heat of formation + Delta-G solvation = -45.494753 kcal Electronic energy + Delta-G solvation = -29656.601423 eV Core-core repulsion = 25625.973589 eV Total energy + Delta-G solvation = -4030.627834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.92042 -42.14341 -39.96458 -38.82987 -37.75478 -35.68284 -33.73982 -32.45861 -31.54128 -31.16929 -30.53385 -27.31106 -26.73226 -25.73732 -24.52445 -23.50972 -22.98041 -22.26567 -21.69682 -20.27353 -19.66669 -18.85275 -17.69864 -17.33432 -17.15424 -16.87011 -16.61577 -16.56249 -16.39142 -15.86361 -15.65610 -15.46289 -14.92347 -14.73670 -14.67622 -14.40431 -14.28063 -14.26751 -13.83959 -13.54462 -13.35548 -13.25897 -13.10240 -12.82142 -12.79575 -12.67935 -12.61264 -12.45617 -12.35490 -12.09299 -11.90706 -11.81187 -11.52050 -11.40573 -11.31132 -11.05766 -10.90659 -10.15635 -9.90023 -9.63259 -9.34096 -8.01900 -5.35116 0.14736 0.22632 1.37972 1.39409 1.45941 1.54311 2.04310 2.47779 2.59678 3.14153 3.30545 3.51164 3.54000 3.57715 3.64310 3.67416 3.82770 3.86228 3.97713 4.11716 4.13708 4.24362 4.27359 4.43934 4.49174 4.53906 4.70798 4.77558 4.81276 4.83193 4.88007 4.89443 4.96592 5.04378 5.04837 5.10882 5.12559 5.12717 5.19912 5.26609 5.38960 5.42325 5.43875 5.48121 5.50946 5.78047 5.92779 6.21558 6.52733 7.06436 7.20544 7.81845 7.99777 9.19270 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003399 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.133633 B = 8236.180299 C = 9350.535291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.145 3.855 3 H 0.064 0.936 4 N -0.700 5.700 5 C 0.541 3.459 6 O -0.576 6.576 7 C -0.070 4.070 8 C -0.044 4.044 9 C -0.114 4.114 10 C -0.079 4.079 11 C -0.155 4.155 12 C 0.076 3.924 13 F -0.155 7.155 14 C -0.158 4.158 15 C -0.108 4.108 16 C -0.139 4.139 17 C -0.114 4.114 18 C 0.174 3.826 19 H 0.064 0.936 20 C -0.154 4.154 21 N -0.745 5.745 22 C -0.221 4.221 23 H 0.065 0.935 24 C -0.057 4.057 25 N -0.981 5.981 26 Si 0.943 3.057 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.254 1.254 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.363 0.637 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -7.697 28.595 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 H 0.082 0.918 4 N -0.351 5.351 5 C 0.328 3.672 6 O -0.455 6.455 7 C -0.073 4.073 8 C -0.044 4.044 9 C -0.132 4.132 10 C -0.096 4.096 11 C -0.174 4.174 12 C 0.057 3.943 13 F -0.134 7.134 14 C -0.177 4.177 15 C -0.146 4.146 16 C -0.177 4.177 17 C -0.151 4.151 18 C 0.065 3.935 19 H 0.082 0.918 20 C -0.214 4.214 21 N -0.389 5.389 22 C -0.351 4.351 23 H 0.083 0.917 24 C -0.249 4.249 25 N -0.632 5.632 26 Si 0.771 3.229 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.179 1.179 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.196 0.804 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.306 -6.999 28.453 29.778 hybrid contribution 0.366 1.472 -1.084 1.864 sum 5.672 -5.527 27.369 28.492 Atomic orbital electron populations 1.21985 0.94509 1.02718 1.01286 1.20968 0.94517 0.96515 0.84090 0.91786 1.45758 1.66224 1.14609 1.08476 1.20235 0.75541 0.86759 0.84682 1.90682 1.52253 1.16391 1.86149 1.20932 0.94921 0.98630 0.92818 1.19218 0.91677 0.94227 0.99324 1.21509 1.00353 0.92038 0.99303 1.21420 0.90405 1.01922 0.95890 1.21485 1.01721 0.91346 1.02808 1.17972 0.81038 0.91454 1.03830 1.91469 1.47416 1.81499 1.93043 1.20965 0.92051 1.00410 1.04293 1.23146 0.94732 0.97408 0.99272 1.22839 0.95634 0.97207 1.01984 1.22899 0.98363 0.99188 0.94669 1.20499 0.92718 0.95852 0.84412 0.91773 1.22264 0.97529 1.00734 1.00871 1.42659 1.79902 1.09512 1.06821 1.18976 1.34795 0.94625 0.86753 0.91702 1.25335 1.02509 1.01702 0.95320 1.69857 1.54779 1.37446 1.01111 0.85594 0.77609 0.81710 0.77996 1.21109 1.22258 1.17850 0.92824 0.92662 0.91272 0.75156 0.81757 0.81388 0.83258 0.86857 0.90067 0.85382 0.88644 0.91886 0.87469 0.92334 0.91353 0.94012 0.94413 0.80403 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.33 71.98 0.67 -3.80 16 2 C 0.14 4.50 2.25 44.99 0.10 4.60 16 3 H 0.06 2.30 7.51 -2.39 -0.02 2.28 16 4 N -0.70 -16.92 4.33 -442.53 -1.92 -18.84 16 5 C 0.54 13.77 6.37 87.66 0.56 14.33 16 6 O -0.58 -19.61 15.51 -3.04 -0.05 -19.65 16 7 C -0.07 -1.20 0.95 -53.15 -0.05 -1.25 16 8 C -0.04 -0.70 4.60 -19.87 -0.09 -0.79 16 9 C -0.11 -1.16 9.05 22.27 0.20 -0.96 16 10 C -0.08 -0.76 10.04 22.26 0.22 -0.53 16 11 C -0.15 -2.22 10.03 22.31 0.22 -2.00 16 12 C 0.08 1.55 7.30 22.37 0.16 1.72 16 13 F -0.16 -3.78 17.27 44.97 0.78 -3.00 16 14 C -0.16 -3.27 9.44 22.31 0.21 -3.06 16 15 C -0.11 -1.19 6.32 31.21 0.20 -0.99 16 16 C -0.14 -1.98 7.81 31.21 0.24 -1.73 16 17 C -0.11 -1.93 6.92 31.12 0.22 -1.71 16 18 C 0.17 6.17 2.52 44.99 0.11 6.28 16 19 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 20 C -0.15 -5.22 9.34 71.98 0.67 -4.55 16 21 N -0.75 -33.64 4.23 -322.93 -1.37 -35.01 16 22 C -0.22 -12.12 10.41 84.03 0.87 -11.24 16 23 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 24 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 25 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 26 Si 0.94 45.72 27.74 68.60 1.90 47.62 16 27 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.91 7.44 -2.39 -0.02 1.90 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.41 7.91 8.16 -92.71 -0.76 7.15 16 34 H 0.16 0.69 6.42 -2.91 -0.02 0.67 16 35 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 39 H 0.13 0.65 6.81 -2.39 -0.02 0.64 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16 43 H 0.06 1.32 7.37 -2.39 -0.02 1.30 16 44 H 0.07 1.89 7.44 -2.39 -0.02 1.87 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.36 16.33 5.44 -92.71 -0.50 15.82 16 48 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.96 392.22 4.30 -68.66 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.34 Total: 30.54 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.00 Total: -8.54 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -2.98 Total: -115.63 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -72.96 4.30 -68.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717420757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.163 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds