Wall clock time and date at job start Tue Mar 31 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.47049 * 2 1 4 4 C 1.53004 * 109.46937 * 119.99727 * 2 1 3 5 5 N 1.46496 * 109.46946 * 180.55216 * 4 2 1 6 6 C 1.34777 * 119.99903 * 172.95145 * 5 4 2 7 7 O 1.21278 * 120.00147 * 354.93604 * 6 5 4 8 8 C 1.50702 * 120.00222 * 175.21542 * 6 5 4 9 9 C 1.53003 * 115.54934 * 268.68599 * 8 6 5 10 10 C 1.50706 * 109.46794 * 293.50610 * 9 8 6 11 11 C 1.38212 * 120.01059 * 266.44417 * 10 9 8 12 12 C 1.38223 * 120.02581 * 179.72164 * 11 10 9 13 13 C 1.38264 * 120.05006 * 0.55569 * 12 11 10 14 14 C 1.38182 * 120.02231 * 359.72124 * 13 12 11 15 15 C 1.38428 * 120.01281 * 86.71894 * 10 9 8 16 16 F 1.35110 * 120.02764 * 0.02562 * 15 10 9 17 17 C 1.53003 * 117.50060 * 122.97242 * 8 6 5 18 18 C 1.53002 * 117.49788 * 54.34944 * 8 6 5 19 19 N 1.46497 * 109.47274 * 239.99259 * 2 1 3 20 20 C 1.46507 * 120.00227 * 298.41825 * 19 2 1 21 21 C 1.36942 * 119.99815 * 118.41082 * 19 2 1 22 22 H 1.07990 * 119.99539 * 28.04426 * 21 19 2 23 23 C 1.38806 * 119.99761 * 208.03978 * 21 19 2 24 24 N 1.31623 * 120.00320 * 8.21857 * 23 21 19 25 25 Si 1.86805 * 119.99678 * 188.21203 * 23 21 19 26 26 H 1.48499 * 109.47082 * 65.00511 * 25 23 21 27 27 H 1.48508 * 109.46954 * 185.00268 * 25 23 21 28 28 H 1.48494 * 109.47206 * 305.00164 * 25 23 21 29 29 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47027 * 300.00176 * 1 2 3 31 31 H 1.09000 * 109.46985 * 60.00438 * 1 2 3 32 32 H 1.09002 * 109.47170 * 60.54934 * 4 2 1 33 33 H 1.09003 * 109.46943 * 300.54794 * 4 2 1 34 34 H 0.97000 * 120.00147 * 352.94681 * 5 4 2 35 35 H 1.09000 * 109.46867 * 53.50286 * 9 8 6 36 36 H 1.08994 * 109.46835 * 173.50786 * 9 8 6 37 37 H 1.08005 * 119.98921 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.97742 * 180.27311 * 12 11 10 39 39 H 1.08001 * 119.99257 * 179.74007 * 13 12 11 40 40 H 1.08002 * 120.00725 * 180.02562 * 14 13 12 41 41 H 1.08994 * 117.49364 * 0.02562 * 17 8 6 42 42 H 1.09002 * 117.49514 * 145.02341 * 17 8 6 43 43 H 1.09000 * 117.49763 * 214.98238 * 18 8 6 44 44 H 1.08999 * 117.50023 * 0.02562 * 18 8 6 45 45 H 1.08993 * 109.47054 * 90.48605 * 20 19 2 46 46 H 1.08990 * 109.46718 * 210.49112 * 20 19 2 47 47 H 1.09004 * 109.46606 * 330.48712 * 20 19 2 48 48 H 0.96997 * 119.99838 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5050 -0.7097 1.2560 6 6 4.1775 -1.1630 2.3324 7 8 3.5727 -1.4943 3.3301 8 6 5.6815 -1.2522 2.2987 9 6 6.2527 -2.5905 1.8257 10 6 5.9164 -3.6630 2.8296 11 6 6.8142 -3.9775 3.8322 12 6 6.5036 -4.9572 4.7565 13 6 5.2995 -5.6316 4.6724 14 6 4.4028 -5.3228 3.6675 15 6 4.7105 -4.3375 2.7444 16 9 3.8347 -4.0351 1.7611 17 6 6.4586 -0.4930 3.3760 18 6 6.4563 0.0154 1.9329 19 7 2.0184 -0.6907 -1.1960 20 6 1.6934 -2.1031 -1.4104 21 6 2.7787 -0.0162 -2.1138 22 1 3.3899 0.8172 -1.8006 23 6 2.7637 -0.4038 -3.4466 24 7 1.9022 -1.3094 -3.8590 25 14 3.9662 0.3602 -4.6549 26 1 5.3519 -0.0228 -4.2833 27 1 3.6683 -0.1283 -6.0254 28 1 3.8341 1.8387 -4.6168 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6848 -1.7517 1.2445 33 1 1.6687 -0.2130 2.1392 34 1 3.9909 -0.3759 0.4857 35 1 5.8201 -2.8489 0.8592 36 1 7.3354 -2.5096 1.7294 37 1 7.7572 -3.4548 3.8959 38 1 7.2038 -5.1993 5.5422 39 1 5.0595 -6.3998 5.3926 40 1 3.4621 -5.8495 3.6023 41 1 5.8820 0.0706 4.1094 42 1 7.3771 -0.9470 3.7482 43 1 7.3732 -0.1041 1.3557 44 1 5.8783 0.9140 1.7171 45 1 0.7652 -2.1804 -1.9765 46 1 2.4994 -2.5809 -1.9670 47 1 1.5737 -2.5986 -0.4469 48 1 1.8915 -1.5799 -4.7905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717491274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:40 Heat of formation + Delta-G solvation = -14.200374 kcal Electronic energy + Delta-G solvation = -30202.689920 eV Core-core repulsion = 26173.419112 eV Total energy + Delta-G solvation = -4029.270808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.63371 -40.03031 -38.80322 -37.08839 -36.24322 -33.67364 -32.44912 -31.86771 -30.51295 -29.31124 -27.45445 -26.03812 -25.93223 -23.25615 -22.77835 -22.61327 -22.45916 -21.43183 -19.49140 -18.76038 -17.47484 -16.90822 -16.73296 -16.24717 -15.76210 -15.66274 -15.43370 -15.20197 -14.88772 -14.27259 -14.18542 -14.10496 -13.51723 -13.42625 -13.10634 -12.88786 -12.69352 -12.61598 -12.36594 -12.16809 -12.07018 -11.87846 -11.71875 -11.58106 -11.36896 -11.15263 -11.03838 -10.80489 -10.73909 -10.57902 -10.40336 -10.25210 -10.02607 -9.91099 -9.74789 -9.31750 -8.95580 -8.57054 -8.55137 -8.40337 -6.69977 -5.74538 -3.25434 1.17550 1.22493 3.03763 3.35479 3.40918 3.42051 3.46343 3.60128 3.79489 4.37952 4.45894 4.52864 4.65847 4.75865 4.86026 4.92317 4.97005 5.14368 5.24021 5.33948 5.38527 5.47596 5.56263 5.58141 5.65908 5.71036 5.80803 5.83105 5.96757 6.00346 6.05023 6.06113 6.15943 6.18446 6.26733 6.31906 6.36149 6.39199 6.49785 6.83122 6.91830 6.93401 6.94840 7.12534 7.41748 7.73846 7.79432 8.12741 8.41479 8.73386 9.23080 9.84707 10.37511 11.30300 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.003755 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.771663 B = 7455.857387 C = 7719.303224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.107 3.893 5 N -0.700 5.700 6 C 0.546 3.454 7 O -0.547 6.547 8 C -0.146 4.146 9 C -0.036 4.036 10 C -0.110 4.110 11 C -0.086 4.086 12 C -0.137 4.137 13 C -0.096 4.096 14 C -0.155 4.155 15 C 0.122 3.878 16 F -0.128 7.128 17 C -0.146 4.146 18 C -0.163 4.163 19 N -0.591 5.591 20 C 0.166 3.834 21 C -0.262 4.262 22 H 0.065 0.935 23 C 0.010 3.990 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.023 0.977 46 H 0.043 0.957 47 H -0.002 1.002 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.100 -4.039 15.390 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.085 0.915 4 C -0.018 4.018 5 N -0.350 5.350 6 C 0.330 3.670 7 O -0.425 6.425 8 C -0.150 4.150 9 C -0.073 4.073 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.155 4.155 13 C -0.114 4.114 14 C -0.174 4.174 15 C 0.103 3.897 16 F -0.106 7.106 17 C -0.183 4.183 18 C -0.200 4.200 19 N -0.314 5.314 20 C 0.022 3.978 21 C -0.391 4.391 22 H 0.082 0.918 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.573 -4.362 15.835 19.011 hybrid contribution 0.469 0.485 -1.390 1.545 sum 10.042 -3.877 14.445 18.015 Atomic orbital electron populations 1.22176 0.97658 1.01286 1.00423 1.20619 0.92469 0.95445 0.86501 0.91525 1.21930 0.79332 1.01426 0.99132 1.45845 1.07787 1.63105 1.18290 1.19305 0.87334 0.77176 0.83167 1.90644 1.69663 1.49682 1.32544 1.21355 0.92166 0.94240 1.07190 1.19970 1.01038 0.89039 0.97282 1.19775 0.93978 0.98316 0.98990 1.20841 0.98849 0.97149 0.93582 1.21094 0.97411 0.97359 0.99614 1.20938 0.93638 0.99493 0.97358 1.21135 1.01345 0.98934 0.95938 1.17579 0.87927 0.96323 0.87918 1.91572 1.67618 1.92091 1.59346 1.22933 1.01191 1.02099 0.92080 1.23163 1.02084 0.96390 0.98342 1.43897 1.59762 1.06849 1.20938 1.20686 0.99759 0.83279 0.94112 1.19092 1.18542 1.13963 0.87521 0.91770 1.25141 0.97934 0.99004 0.96893 1.70031 1.35904 1.33333 1.15335 0.86391 0.80863 0.78941 0.80618 1.21106 1.21714 1.20873 0.93238 0.94156 0.92238 0.92218 0.92434 0.75529 0.89424 0.89514 0.85469 0.85707 0.85450 0.85042 0.88426 0.88167 0.87770 0.88057 0.95909 0.93807 0.98381 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.22 37.16 0.34 -2.54 16 2 C 0.16 3.15 2.83 -67.93 -0.19 2.96 16 3 H 0.07 1.31 7.89 -51.93 -0.41 0.90 16 4 C 0.11 2.01 5.02 -4.04 -0.02 1.99 16 5 N -0.70 -12.52 5.44 -60.29 -0.33 -12.84 16 6 C 0.55 9.51 5.36 -10.98 -0.06 9.45 16 7 O -0.55 -11.16 16.61 5.56 0.09 -11.07 16 8 C -0.15 -2.00 1.84 -155.65 -0.29 -2.29 16 9 C -0.04 -0.46 5.02 -27.88 -0.14 -0.60 16 10 C -0.11 -1.48 4.99 -104.56 -0.52 -2.00 16 11 C -0.09 -0.93 9.68 -39.60 -0.38 -1.32 16 12 C -0.14 -1.36 10.04 -39.58 -0.40 -1.75 16 13 C -0.10 -1.02 10.04 -39.59 -0.40 -1.42 16 14 C -0.15 -2.04 10.03 -39.51 -0.40 -2.43 16 15 C 0.12 1.89 6.43 -39.42 -0.25 1.63 16 16 F -0.13 -2.35 15.54 2.25 0.03 -2.31 16 17 C -0.15 -1.64 9.96 -26.73 -0.27 -1.90 16 18 C -0.16 -1.81 9.87 -26.73 -0.26 -2.08 16 19 N -0.59 -14.00 2.42 -173.49 -0.42 -14.41 16 20 C 0.17 4.07 8.09 59.85 0.48 4.55 16 21 C -0.26 -6.73 9.49 -15.06 -0.14 -6.88 16 22 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 23 C 0.01 0.26 5.15 -17.43 -0.09 0.17 16 24 N -0.90 -25.70 10.80 55.49 0.60 -25.11 16 25 Si 0.90 21.07 29.56 -169.99 -5.03 16.04 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 29 H 0.05 0.93 7.71 -51.93 -0.40 0.53 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.22 6.58 -51.93 -0.34 0.88 16 33 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.41 7.38 8.16 -40.82 -0.33 7.05 16 35 H 0.09 1.28 7.74 -51.93 -0.40 0.88 16 36 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.60 7.52 -51.93 -0.39 0.21 16 46 H 0.04 1.16 7.25 -51.93 -0.38 0.79 16 47 H 0.00 -0.05 6.33 -51.93 -0.33 -0.38 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -31.26 397.22 -9.63 -40.89 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.59 Total: 7.29 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.98 Total: -4.46 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.15 Total: -52.36 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.03 Total: -2.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.26 -9.63 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717491274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.692 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds