Wall clock time and date at job start Tue Mar 31 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.47049 * 2 1 4 4 C 1.53004 * 109.46937 * 119.99727 * 2 1 3 5 5 N 1.46496 * 109.46946 * 180.55216 * 4 2 1 6 6 C 1.34777 * 119.99903 * 172.95145 * 5 4 2 7 7 O 1.21278 * 120.00147 * 354.93604 * 6 5 4 8 8 C 1.50702 * 120.00222 * 175.21542 * 6 5 4 9 9 C 1.53003 * 115.54934 * 268.68599 * 8 6 5 10 10 C 1.50706 * 109.46794 * 293.50610 * 9 8 6 11 11 C 1.38212 * 120.01059 * 266.44417 * 10 9 8 12 12 C 1.38223 * 120.02581 * 179.72164 * 11 10 9 13 13 C 1.38264 * 120.05006 * 0.55569 * 12 11 10 14 14 C 1.38182 * 120.02231 * 359.72124 * 13 12 11 15 15 C 1.38428 * 120.01281 * 86.71894 * 10 9 8 16 16 F 1.35110 * 120.02764 * 0.02562 * 15 10 9 17 17 C 1.53003 * 117.50060 * 122.97242 * 8 6 5 18 18 C 1.53002 * 117.49788 * 54.34944 * 8 6 5 19 19 N 1.46497 * 109.47274 * 239.99259 * 2 1 3 20 20 C 1.46507 * 120.00227 * 298.41825 * 19 2 1 21 21 C 1.36942 * 119.99815 * 118.41082 * 19 2 1 22 22 H 1.07990 * 119.99539 * 28.04426 * 21 19 2 23 23 C 1.38806 * 119.99761 * 208.03978 * 21 19 2 24 24 N 1.31623 * 120.00320 * 8.21857 * 23 21 19 25 25 Si 1.86805 * 119.99678 * 188.21203 * 23 21 19 26 26 H 1.48499 * 109.47082 * 65.00511 * 25 23 21 27 27 H 1.48508 * 109.46954 * 185.00268 * 25 23 21 28 28 H 1.48494 * 109.47206 * 305.00164 * 25 23 21 29 29 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47027 * 300.00176 * 1 2 3 31 31 H 1.09000 * 109.46985 * 60.00438 * 1 2 3 32 32 H 1.09002 * 109.47170 * 60.54934 * 4 2 1 33 33 H 1.09003 * 109.46943 * 300.54794 * 4 2 1 34 34 H 0.97000 * 120.00147 * 352.94681 * 5 4 2 35 35 H 1.09000 * 109.46867 * 53.50286 * 9 8 6 36 36 H 1.08994 * 109.46835 * 173.50786 * 9 8 6 37 37 H 1.08005 * 119.98921 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.97742 * 180.27311 * 12 11 10 39 39 H 1.08001 * 119.99257 * 179.74007 * 13 12 11 40 40 H 1.08002 * 120.00725 * 180.02562 * 14 13 12 41 41 H 1.08994 * 117.49364 * 0.02562 * 17 8 6 42 42 H 1.09002 * 117.49514 * 145.02341 * 17 8 6 43 43 H 1.09000 * 117.49763 * 214.98238 * 18 8 6 44 44 H 1.08999 * 117.50023 * 0.02562 * 18 8 6 45 45 H 1.08993 * 109.47054 * 90.48605 * 20 19 2 46 46 H 1.08990 * 109.46718 * 210.49112 * 20 19 2 47 47 H 1.09004 * 109.46606 * 330.48712 * 20 19 2 48 48 H 0.96997 * 119.99838 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5050 -0.7097 1.2560 6 6 4.1775 -1.1630 2.3324 7 8 3.5727 -1.4943 3.3301 8 6 5.6815 -1.2522 2.2987 9 6 6.2527 -2.5905 1.8257 10 6 5.9164 -3.6630 2.8296 11 6 6.8142 -3.9775 3.8322 12 6 6.5036 -4.9572 4.7565 13 6 5.2995 -5.6316 4.6724 14 6 4.4028 -5.3228 3.6675 15 6 4.7105 -4.3375 2.7444 16 9 3.8347 -4.0351 1.7611 17 6 6.4586 -0.4930 3.3760 18 6 6.4563 0.0154 1.9329 19 7 2.0184 -0.6907 -1.1960 20 6 1.6934 -2.1031 -1.4104 21 6 2.7787 -0.0162 -2.1138 22 1 3.3899 0.8172 -1.8006 23 6 2.7637 -0.4038 -3.4466 24 7 1.9022 -1.3094 -3.8590 25 14 3.9662 0.3602 -4.6549 26 1 5.3519 -0.0228 -4.2833 27 1 3.6683 -0.1283 -6.0254 28 1 3.8341 1.8387 -4.6168 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6848 -1.7517 1.2445 33 1 1.6687 -0.2130 2.1392 34 1 3.9909 -0.3759 0.4857 35 1 5.8201 -2.8489 0.8592 36 1 7.3354 -2.5096 1.7294 37 1 7.7572 -3.4548 3.8959 38 1 7.2038 -5.1993 5.5422 39 1 5.0595 -6.3998 5.3926 40 1 3.4621 -5.8495 3.6023 41 1 5.8820 0.0706 4.1094 42 1 7.3771 -0.9470 3.7482 43 1 7.3732 -0.1041 1.3557 44 1 5.8783 0.9140 1.7171 45 1 0.7652 -2.1804 -1.9765 46 1 2.4994 -2.5809 -1.9670 47 1 1.5737 -2.5986 -0.4469 48 1 1.8915 -1.5799 -4.7905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717491274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:39 Heat of formation + Delta-G solvation = -31.246002 kcal Electronic energy + Delta-G solvation = -30203.429074 eV Core-core repulsion = 26173.419112 eV Total energy + Delta-G solvation = -4030.009962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.84474 -41.22071 -39.81625 -38.57619 -37.58807 -35.37582 -33.65951 -33.32355 -31.39635 -31.17900 -28.42014 -28.02641 -27.41563 -25.05444 -23.92737 -23.67274 -23.33693 -22.43408 -21.12448 -20.14974 -18.85015 -18.48911 -17.86579 -17.32625 -17.19650 -16.97768 -16.73570 -16.57511 -16.11557 -15.83011 -15.57461 -15.09824 -14.90854 -14.65997 -14.51342 -14.33139 -14.17494 -13.87862 -13.71653 -13.55080 -13.25811 -13.06927 -13.00464 -12.87518 -12.66004 -12.59993 -12.51816 -12.37695 -12.32583 -12.14267 -12.03476 -11.83233 -11.56724 -11.52297 -10.99119 -10.64197 -10.58007 -9.92929 -9.84516 -9.51234 -8.71040 -7.79664 -5.32429 0.27411 0.32239 1.50110 1.51483 1.57682 1.70561 2.30316 2.52812 2.65543 2.79742 3.36813 3.43266 3.59731 3.62835 3.72515 3.82492 3.85839 4.01311 4.05152 4.11381 4.23465 4.34595 4.39175 4.45995 4.54429 4.69280 4.70281 4.72756 4.74656 4.76081 4.88146 4.94586 4.99249 5.01030 5.07634 5.18146 5.19632 5.22334 5.30923 5.34129 5.38623 5.45355 5.50436 5.60037 5.68546 5.69330 6.03769 6.37858 6.70617 7.17763 7.34694 7.87005 8.36823 9.24675 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.003755 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.771663 B = 7455.857387 C = 7719.303224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.074 0.926 4 C 0.120 3.880 5 N -0.703 5.703 6 C 0.544 3.456 7 O -0.582 6.582 8 C -0.170 4.170 9 C -0.031 4.031 10 C -0.123 4.123 11 C -0.085 4.085 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.174 4.174 15 C 0.073 3.927 16 F -0.160 7.160 17 C -0.129 4.129 18 C -0.149 4.149 19 N -0.600 5.600 20 C 0.190 3.810 21 C -0.261 4.261 22 H 0.078 0.922 23 C -0.047 4.047 24 N -0.939 5.939 25 Si 0.967 3.033 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.273 1.273 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.095 0.905 45 H -0.003 1.003 46 H 0.015 0.985 47 H 0.010 0.990 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.339 -3.012 17.590 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.092 0.908 4 C -0.006 4.006 5 N -0.353 5.353 6 C 0.331 3.669 7 O -0.462 6.462 8 C -0.173 4.173 9 C -0.068 4.068 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.193 4.193 15 C 0.054 3.946 16 F -0.139 7.139 17 C -0.166 4.166 18 C -0.186 4.186 19 N -0.323 5.323 20 C 0.045 3.955 21 C -0.391 4.391 22 H 0.095 0.905 23 C -0.243 4.243 24 N -0.585 5.585 25 Si 0.795 3.205 26 H -0.201 1.201 27 H -0.229 1.229 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.113 0.887 45 H 0.016 0.984 46 H 0.034 0.966 47 H 0.028 0.972 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.824 -3.308 18.067 22.401 hybrid contribution -0.545 0.133 -1.928 2.008 sum 12.279 -3.174 16.139 20.526 Atomic orbital electron populations 1.22064 0.96389 1.01007 1.01282 1.20747 0.93402 0.95428 0.85202 0.90758 1.21672 0.80289 0.99856 0.98740 1.45882 1.07331 1.63467 1.18614 1.19999 0.89197 0.75641 0.82109 1.90609 1.70975 1.50891 1.33722 1.21310 0.89515 0.95903 1.10609 1.19972 1.02765 0.88442 0.95652 1.20011 0.93777 0.98462 1.00123 1.21283 0.99388 0.97168 0.92393 1.21608 0.97327 0.95916 0.99723 1.21348 0.93416 0.99923 0.96715 1.21355 1.02278 0.98995 0.96706 1.18151 0.89009 0.98712 0.88715 1.91479 1.68887 1.92639 1.60852 1.23059 1.01321 1.00613 0.91651 1.23292 1.02139 0.94477 0.98703 1.44014 1.60003 1.06566 1.21705 1.20283 0.97287 0.84200 0.93715 1.19502 1.18262 1.13524 0.87777 0.90457 1.25896 0.99783 0.99843 0.98744 1.70215 1.37966 1.35235 1.15073 0.85356 0.79068 0.78383 0.77697 1.20150 1.22924 1.19825 0.94132 0.90714 0.93826 0.94521 0.91386 0.75651 0.92504 0.85890 0.81959 0.81868 0.82515 0.85304 0.89549 0.84995 0.85224 0.88655 0.98448 0.96636 0.97198 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.22 71.99 0.66 -4.79 16 2 C 0.16 6.35 2.83 45.00 0.13 6.48 16 3 H 0.07 2.86 7.89 -2.39 -0.02 2.84 16 4 C 0.12 4.57 5.02 86.38 0.43 5.01 16 5 N -0.70 -25.53 5.44 -463.06 -2.52 -28.05 16 6 C 0.54 19.12 5.36 87.66 0.47 19.59 16 7 O -0.58 -24.22 16.61 -3.02 -0.05 -24.27 16 8 C -0.17 -4.42 1.84 -52.92 -0.10 -4.52 16 9 C -0.03 -0.76 5.02 29.85 0.15 -0.61 16 10 C -0.12 -3.20 4.99 -19.82 -0.10 -3.30 16 11 C -0.08 -1.54 9.68 22.26 0.22 -1.33 16 12 C -0.13 -2.06 10.04 22.27 0.22 -1.84 16 13 C -0.10 -1.85 10.04 22.26 0.22 -1.63 16 14 C -0.17 -4.70 10.03 22.31 0.22 -4.48 16 15 C 0.07 2.36 6.43 22.37 0.14 2.50 16 16 F -0.16 -6.38 15.54 44.97 0.70 -5.68 16 17 C -0.13 -2.50 9.96 30.60 0.30 -2.19 16 18 C -0.15 -2.90 9.87 30.60 0.30 -2.60 16 19 N -0.60 -29.00 2.42 -702.78 -1.70 -30.69 16 20 C 0.19 9.79 8.09 127.77 1.03 10.82 16 21 C -0.26 -13.48 9.49 84.03 0.80 -12.69 16 22 H 0.08 3.74 7.84 -2.92 -0.02 3.72 16 23 C -0.05 -2.56 5.15 84.86 0.44 -2.13 16 24 N -0.94 -55.30 10.80 21.65 0.23 -55.07 16 25 Si 0.97 43.60 29.56 68.60 2.03 45.63 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 H 0.04 1.54 7.71 -2.39 -0.02 1.53 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.56 6.58 -2.39 -0.02 1.55 16 33 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 34 H 0.41 14.84 8.16 -92.71 -0.76 14.08 16 35 H 0.06 1.72 7.74 -2.39 -0.02 1.70 16 36 H 0.12 2.02 8.00 -2.39 -0.02 2.00 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.00 -0.16 7.52 -2.39 -0.02 -0.17 16 46 H 0.01 0.84 7.25 -2.39 -0.02 0.83 16 47 H 0.01 0.47 6.33 -2.38 -0.02 0.45 16 48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -71.92 397.22 4.45 -67.47 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.20 Total: 28.37 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.55 Total: 2.30 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.98 Total: -113.81 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.70 Total: -5.68 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.92 4.45 -67.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717491274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.226 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds