Wall clock time and date at job start Tue Mar 31 2020 18:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36940 * 119.99986 * 2 1 4 4 H 1.08000 * 119.99980 * 159.12244 * 3 2 1 5 5 C 1.38806 * 119.99983 * 339.12637 * 3 2 1 6 6 N 1.31620 * 120.00045 * 345.97915 * 5 3 2 7 7 Si 1.86806 * 120.00219 * 165.97724 * 5 3 2 8 8 H 1.48502 * 109.47063 * 94.97451 * 7 5 3 9 9 H 1.48493 * 109.47282 * 214.97772 * 7 5 3 10 10 H 1.48499 * 109.46640 * 334.97585 * 7 5 3 11 11 C 1.46503 * 120.00248 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46811 * 94.67021 * 11 2 1 13 13 H 1.09000 * 109.87346 * 52.40289 * 12 11 2 14 14 C 1.54317 * 109.88571 * 291.38396 * 12 11 2 15 15 C 1.55399 * 102.83013 * 218.48437 * 14 12 11 16 16 C 1.54913 * 101.66640 * 35.33260 * 15 14 12 17 17 N 1.47023 * 109.88143 * 173.41403 * 12 11 2 18 18 C 1.34780 * 125.64807 * 298.32760 * 17 12 11 19 19 O 1.21277 * 119.99934 * 5.56452 * 18 17 12 20 20 C 1.50694 * 119.99773 * 185.57501 * 18 17 12 21 21 H 1.09003 * 109.47299 * 344.99020 * 20 18 17 22 22 F 1.39900 * 109.47949 * 104.99768 * 20 18 17 23 23 C 1.53003 * 109.46821 * 224.99532 * 20 18 17 24 24 C 1.50699 * 109.47281 * 174.99704 * 23 20 18 25 25 C 1.38234 * 120.00018 * 269.72762 * 24 23 20 26 26 C 1.38241 * 119.99927 * 179.74341 * 25 24 23 27 27 C 1.38233 * 119.99900 * 0.52750 * 26 25 24 28 28 C 1.38238 * 119.99996 * 359.74904 * 27 26 25 29 29 C 1.38233 * 119.99964 * 89.99853 * 24 23 20 30 30 H 1.09008 * 109.47217 * 85.15606 * 1 2 3 31 31 H 1.09007 * 109.47427 * 205.14961 * 1 2 3 32 32 H 1.08995 * 109.47580 * 325.15565 * 1 2 3 33 33 H 0.97003 * 120.00315 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47302 * 214.66746 * 11 2 1 35 35 H 1.08999 * 109.46772 * 334.67693 * 11 2 1 36 36 H 1.09009 * 110.72144 * 336.75238 * 14 12 11 37 37 H 1.09000 * 110.72081 * 100.02636 * 14 12 11 38 38 H 1.09005 * 110.88968 * 277.26700 * 15 14 12 39 39 H 1.09002 * 111.07520 * 153.48782 * 15 14 12 40 40 H 1.08999 * 110.36761 * 204.23923 * 16 15 14 41 41 H 1.09007 * 110.45427 * 81.96448 * 16 15 14 42 42 H 1.08998 * 109.47329 * 294.99667 * 23 20 18 43 43 H 1.08999 * 109.47244 * 54.99625 * 23 20 18 44 44 H 1.07995 * 120.00332 * 359.97438 * 25 24 23 45 45 H 1.08001 * 120.00336 * 180.29440 * 26 25 24 46 46 H 1.07998 * 120.00469 * 179.76929 * 27 26 25 47 47 H 1.08004 * 119.99923 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.00170 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1764 1.2166 0.3333 5 6 1.5239 2.3486 -0.4283 6 7 0.3861 2.2795 -1.0864 7 14 2.2965 4.0113 -0.0707 8 1 3.1097 4.4404 -1.2368 9 1 1.2271 5.0102 0.1815 10 1 3.1671 3.9051 1.1277 11 6 2.1975 -1.2687 0.0006 12 6 2.5542 -1.6522 -1.4370 13 1 3.0614 -0.8213 -1.9272 14 6 1.2732 -2.0182 -2.2159 15 6 1.7335 -3.2144 -3.0946 16 6 2.7345 -3.9284 -2.1522 17 7 3.4229 -2.8384 -1.4372 18 6 4.6463 -2.9161 -0.8771 19 8 5.0752 -1.9873 -0.2258 20 6 5.4813 -4.1571 -1.0602 21 1 4.8525 -4.9668 -1.4305 22 9 6.5022 -3.9007 -1.9818 23 6 6.0954 -4.5612 0.2816 24 6 6.8290 -5.8682 0.1252 25 6 6.1662 -7.0625 0.3378 26 6 6.8377 -8.2617 0.1890 27 6 8.1748 -8.2662 -0.1616 28 6 8.8391 -7.0717 -0.3686 29 6 8.1661 -5.8727 -0.2254 30 1 -0.3634 0.0868 -1.0241 31 1 -0.3634 -0.9303 0.4368 32 1 -0.3634 0.8433 0.5871 33 1 -0.0510 3.0920 -1.3861 34 1 3.1111 -1.1605 0.5850 35 1 1.5747 -2.0476 0.4405 36 1 0.4808 -2.3244 -1.5329 37 1 0.9476 -1.1835 -2.8366 38 1 2.2306 -2.8637 -3.9990 39 1 0.8949 -3.8661 -3.3399 40 1 3.4493 -4.5133 -2.7310 41 1 2.2038 -4.5687 -1.4474 42 1 6.7929 -3.7901 0.6090 43 1 5.3050 -4.6747 1.0235 44 1 5.1228 -7.0590 0.6164 45 1 6.3187 -9.1950 0.3505 46 1 8.7005 -9.2029 -0.2741 47 1 9.8839 -7.0752 -0.6421 48 1 8.6852 -4.9395 -0.3868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725056989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:57 Heat of formation + Delta-G solvation = -32.225043 kcal Electronic energy + Delta-G solvation = -29225.230409 eV Core-core repulsion = 25195.177993 eV Total energy + Delta-G solvation = -4030.052416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -47.90009 -39.94151 -39.40118 -37.34807 -35.29657 -33.89723 -31.76357 -31.29167 -31.12567 -29.66916 -28.79381 -26.03531 -25.28600 -24.92420 -22.81302 -22.66358 -21.36039 -21.06239 -20.39309 -18.90734 -17.66826 -16.93946 -16.62830 -16.49607 -16.28745 -15.53917 -15.24379 -15.14163 -14.86276 -14.55171 -13.92475 -13.70369 -13.63638 -13.47185 -13.30054 -13.19168 -13.07071 -12.91891 -12.77311 -12.49193 -12.13097 -11.89117 -11.81336 -11.49668 -11.35439 -11.27320 -11.19953 -10.90901 -10.78929 -10.66457 -10.53202 -10.35031 -10.12983 -9.92516 -9.71702 -9.45148 -9.15629 -8.94133 -8.56226 -8.36180 -6.71936 -5.68508 -3.11022 1.06529 1.16658 2.60117 2.97286 3.43279 3.49601 3.53234 3.54385 4.18530 4.43030 4.45464 4.56992 4.60111 4.68127 4.71335 4.77489 4.89459 4.90436 5.06154 5.12049 5.26673 5.31011 5.42911 5.45830 5.58977 5.59891 5.62661 5.70124 5.77496 5.81753 5.84815 5.91944 6.09752 6.20885 6.27093 6.27646 6.31921 6.38961 6.51296 6.62449 6.74258 6.75563 6.84377 7.06767 7.40093 7.67561 7.74238 7.90691 8.23884 8.45018 9.29797 9.92301 10.39687 11.37007 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.002731 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.655867 B =10250.938221 C =11008.068187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.247 4.247 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.146 3.854 12 C 0.113 3.887 13 H 0.080 0.920 14 C -0.111 4.111 15 C -0.135 4.135 16 C 0.094 3.906 17 N -0.605 5.605 18 C 0.501 3.499 19 O -0.509 6.509 20 C 0.091 3.909 21 H 0.097 0.903 22 F -0.189 7.189 23 C -0.098 4.098 24 C -0.085 4.085 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.103 4.103 30 H 0.030 0.970 31 H -0.005 1.005 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -23.154 -1.548 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.377 4.377 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.017 3.983 12 C 0.009 3.991 13 H 0.098 0.902 14 C -0.149 4.149 15 C -0.173 4.173 16 C -0.030 4.030 17 N -0.340 5.340 18 C 0.286 3.714 19 O -0.384 6.384 20 C 0.052 3.948 21 H 0.115 0.885 22 F -0.170 7.170 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.121 4.121 30 H 0.049 0.951 31 H 0.013 0.987 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.667 -22.471 -1.210 24.115 hybrid contribution 0.378 0.904 -0.198 1.000 sum 9.045 -21.567 -1.408 23.429 Atomic orbital electron populations 1.20839 0.82482 0.95379 0.99402 1.43954 1.01824 1.00548 1.85497 1.19274 0.97227 0.84891 1.36270 0.91205 1.24950 0.97824 0.98330 0.98694 1.70070 1.18604 1.26707 1.40245 0.86256 0.78194 0.84105 0.78162 1.21588 1.21678 1.20466 1.21178 0.96368 0.88232 0.92473 1.22807 0.89238 0.85819 1.01285 0.90154 1.22619 0.96700 0.97564 0.98039 1.22844 0.98409 0.98019 0.98059 1.22409 0.95364 0.90299 0.94887 1.48839 1.15952 1.14992 1.54219 1.20398 0.81275 0.89131 0.80618 1.90776 1.70511 1.38826 1.38269 1.21574 0.87148 0.96596 0.89491 0.88534 1.92876 1.60955 1.95544 1.67595 1.21054 1.01438 0.95541 0.95573 1.19745 0.94415 0.94299 1.00081 1.21094 0.99971 0.91939 1.00262 1.21130 0.94808 0.97879 1.00096 1.21171 0.94880 0.98060 0.99982 1.21172 1.00004 0.92470 1.00160 1.21152 0.94032 0.98481 0.98461 0.95132 0.98667 0.93818 0.93912 0.92409 0.94517 0.90930 0.89633 0.90864 0.90147 0.91153 0.91163 0.88282 0.88624 0.85877 0.86031 0.86198 0.86015 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.21 59.84 0.49 4.46 16 2 N -0.60 -15.16 2.82 -181.12 -0.51 -15.67 16 3 C -0.25 -7.02 9.67 -15.06 -0.15 -7.16 16 4 H 0.07 2.04 7.87 -52.49 -0.41 1.62 16 5 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 6 N -0.91 -26.46 10.64 55.49 0.59 -25.87 16 7 Si 0.90 22.62 29.58 -169.99 -5.03 17.60 16 8 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.15 3.16 5.17 -4.04 -0.02 3.13 16 12 C 0.11 2.16 3.11 -66.95 -0.21 1.95 16 13 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 14 C -0.11 -1.79 5.84 -24.77 -0.14 -1.94 16 15 C -0.14 -1.59 7.09 -24.45 -0.17 -1.76 16 16 C 0.09 1.05 6.40 -2.53 -0.02 1.04 16 17 N -0.61 -9.51 3.06 -163.02 -0.50 -10.01 16 18 C 0.50 8.27 7.01 -10.99 -0.08 8.20 16 19 O -0.51 -10.63 15.37 5.56 0.09 -10.54 16 20 C 0.09 1.14 3.47 -27.88 -0.10 1.05 16 21 H 0.10 0.95 6.30 -51.93 -0.33 0.62 16 22 F -0.19 -2.71 16.75 2.25 0.04 -2.68 16 23 C -0.10 -1.10 4.83 -27.88 -0.13 -1.23 16 24 C -0.09 -0.87 5.00 -104.63 -0.52 -1.39 16 25 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 29 C -0.10 -1.04 9.55 -39.58 -0.38 -1.42 16 30 H 0.03 0.78 7.41 -51.92 -0.38 0.39 16 31 H -0.01 -0.11 7.80 -51.92 -0.40 -0.52 16 32 H 0.04 1.15 7.20 -51.93 -0.37 0.78 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 1.37 6.44 -51.93 -0.33 1.04 16 35 H 0.04 0.72 7.64 -51.93 -0.40 0.33 16 36 H 0.07 1.16 7.48 -51.92 -0.39 0.77 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.65 7.00 -51.93 -0.36 0.29 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.23 7.99 -51.93 -0.42 0.81 16 43 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 48 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -32.96 390.34 -10.12 -43.08 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.59 Total: -1.04 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.09 Total: -0.76 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.42 Total: -51.55 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.96 -10.12 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725056989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.858 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds