Wall clock time and date at job start Tue Mar 31 2020 18:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36940 * 119.99986 * 2 1 4 4 H 1.08000 * 119.99980 * 159.12244 * 3 2 1 5 5 C 1.38806 * 119.99983 * 339.12637 * 3 2 1 6 6 N 1.31620 * 120.00045 * 345.97915 * 5 3 2 7 7 Si 1.86806 * 120.00219 * 165.97724 * 5 3 2 8 8 H 1.48502 * 109.47063 * 94.97451 * 7 5 3 9 9 H 1.48493 * 109.47282 * 214.97772 * 7 5 3 10 10 H 1.48499 * 109.46640 * 334.97585 * 7 5 3 11 11 C 1.46503 * 120.00248 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46811 * 94.67021 * 11 2 1 13 13 H 1.09000 * 109.87346 * 52.40289 * 12 11 2 14 14 C 1.54317 * 109.88571 * 291.38396 * 12 11 2 15 15 C 1.55399 * 102.83013 * 218.48437 * 14 12 11 16 16 C 1.54913 * 101.66640 * 35.33260 * 15 14 12 17 17 N 1.47023 * 109.88143 * 173.41403 * 12 11 2 18 18 C 1.34780 * 125.64807 * 298.32760 * 17 12 11 19 19 O 1.21277 * 119.99934 * 5.56452 * 18 17 12 20 20 C 1.50694 * 119.99773 * 185.57501 * 18 17 12 21 21 H 1.09003 * 109.47299 * 344.99020 * 20 18 17 22 22 F 1.39900 * 109.47949 * 104.99768 * 20 18 17 23 23 C 1.53003 * 109.46821 * 224.99532 * 20 18 17 24 24 C 1.50699 * 109.47281 * 174.99704 * 23 20 18 25 25 C 1.38234 * 120.00018 * 269.72762 * 24 23 20 26 26 C 1.38241 * 119.99927 * 179.74341 * 25 24 23 27 27 C 1.38233 * 119.99900 * 0.52750 * 26 25 24 28 28 C 1.38238 * 119.99996 * 359.74904 * 27 26 25 29 29 C 1.38233 * 119.99964 * 89.99853 * 24 23 20 30 30 H 1.09008 * 109.47217 * 85.15606 * 1 2 3 31 31 H 1.09007 * 109.47427 * 205.14961 * 1 2 3 32 32 H 1.08995 * 109.47580 * 325.15565 * 1 2 3 33 33 H 0.97003 * 120.00315 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47302 * 214.66746 * 11 2 1 35 35 H 1.08999 * 109.46772 * 334.67693 * 11 2 1 36 36 H 1.09009 * 110.72144 * 336.75238 * 14 12 11 37 37 H 1.09000 * 110.72081 * 100.02636 * 14 12 11 38 38 H 1.09005 * 110.88968 * 277.26700 * 15 14 12 39 39 H 1.09002 * 111.07520 * 153.48782 * 15 14 12 40 40 H 1.08999 * 110.36761 * 204.23923 * 16 15 14 41 41 H 1.09007 * 110.45427 * 81.96448 * 16 15 14 42 42 H 1.08998 * 109.47329 * 294.99667 * 23 20 18 43 43 H 1.08999 * 109.47244 * 54.99625 * 23 20 18 44 44 H 1.07995 * 120.00332 * 359.97438 * 25 24 23 45 45 H 1.08001 * 120.00336 * 180.29440 * 26 25 24 46 46 H 1.07998 * 120.00469 * 179.76929 * 27 26 25 47 47 H 1.08004 * 119.99923 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.00170 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1764 1.2166 0.3333 5 6 1.5239 2.3486 -0.4283 6 7 0.3861 2.2795 -1.0864 7 14 2.2965 4.0113 -0.0707 8 1 3.1097 4.4404 -1.2368 9 1 1.2271 5.0102 0.1815 10 1 3.1671 3.9051 1.1277 11 6 2.1975 -1.2687 0.0006 12 6 2.5542 -1.6522 -1.4370 13 1 3.0614 -0.8213 -1.9272 14 6 1.2732 -2.0182 -2.2159 15 6 1.7335 -3.2144 -3.0946 16 6 2.7345 -3.9284 -2.1522 17 7 3.4229 -2.8384 -1.4372 18 6 4.6463 -2.9161 -0.8771 19 8 5.0752 -1.9873 -0.2258 20 6 5.4813 -4.1571 -1.0602 21 1 4.8525 -4.9668 -1.4305 22 9 6.5022 -3.9007 -1.9818 23 6 6.0954 -4.5612 0.2816 24 6 6.8290 -5.8682 0.1252 25 6 6.1662 -7.0625 0.3378 26 6 6.8377 -8.2617 0.1890 27 6 8.1748 -8.2662 -0.1616 28 6 8.8391 -7.0717 -0.3686 29 6 8.1661 -5.8727 -0.2254 30 1 -0.3634 0.0868 -1.0241 31 1 -0.3634 -0.9303 0.4368 32 1 -0.3634 0.8433 0.5871 33 1 -0.0510 3.0920 -1.3861 34 1 3.1111 -1.1605 0.5850 35 1 1.5747 -2.0476 0.4405 36 1 0.4808 -2.3244 -1.5329 37 1 0.9476 -1.1835 -2.8366 38 1 2.2306 -2.8637 -3.9990 39 1 0.8949 -3.8661 -3.3399 40 1 3.4493 -4.5133 -2.7310 41 1 2.2038 -4.5687 -1.4474 42 1 6.7929 -3.7901 0.6090 43 1 5.3050 -4.6747 1.0235 44 1 5.1228 -7.0590 0.6164 45 1 6.3187 -9.1950 0.3505 46 1 8.7005 -9.2029 -0.2741 47 1 9.8839 -7.0752 -0.6421 48 1 8.6852 -4.9395 -0.3868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725056989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:55 Heat of formation + Delta-G solvation = -50.137536 kcal Electronic energy + Delta-G solvation = -29226.007153 eV Core-core repulsion = 25195.177993 eV Total energy + Delta-G solvation = -4030.829160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.99831 -41.24314 -40.08682 -38.75759 -37.16700 -34.76788 -33.57206 -32.68658 -31.74758 -30.95985 -29.96337 -28.01657 -26.83471 -26.09575 -23.92740 -23.43812 -22.79368 -22.16719 -21.66523 -20.20134 -18.91229 -18.62154 -17.70498 -17.69996 -17.40539 -16.81814 -16.47628 -16.18735 -15.85906 -15.73919 -15.56018 -15.21273 -15.14343 -14.85370 -14.35511 -14.26702 -14.14244 -14.03114 -13.75932 -13.61669 -13.47639 -13.37004 -13.10916 -12.96429 -12.81491 -12.54918 -12.46452 -12.33038 -12.07023 -12.02380 -11.98701 -11.91015 -11.82807 -11.63741 -11.52285 -10.80929 -10.67044 -9.80289 -9.79040 -9.63342 -8.79416 -7.87408 -5.31917 0.40148 0.53206 1.30085 1.40277 1.41060 1.51756 1.75449 2.47855 2.86112 3.12203 3.25981 3.51158 3.53296 3.62180 3.75175 3.80572 3.84519 3.99146 4.06334 4.13150 4.20237 4.33174 4.34358 4.44114 4.47851 4.54852 4.64191 4.65469 4.80501 4.82010 4.83168 4.86952 4.97123 5.07166 5.10138 5.13362 5.15183 5.20360 5.33323 5.39035 5.46303 5.59369 5.60232 5.65709 5.70836 5.73081 6.14025 6.28405 6.44876 6.94791 7.13652 7.84783 8.25034 9.15332 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.002731 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.655867 B =10250.938221 C =11008.068187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.611 5.611 3 C -0.261 4.261 4 H 0.050 0.950 5 C -0.045 4.045 6 N -0.929 5.929 7 Si 0.960 3.040 8 H -0.288 1.288 9 H -0.283 1.283 10 H -0.278 1.278 11 C 0.151 3.849 12 C 0.122 3.878 13 H 0.025 0.975 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.088 3.912 17 N -0.604 5.604 18 C 0.493 3.507 19 O -0.567 6.567 20 C 0.103 3.897 21 H 0.138 0.862 22 F -0.200 7.200 23 C -0.092 4.092 24 C -0.099 4.099 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.125 4.125 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.014 0.986 33 H 0.250 0.750 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.136 0.864 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 -27.000 -2.044 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.334 5.334 3 C -0.391 4.391 4 H 0.068 0.932 5 C -0.241 4.241 6 N -0.575 5.575 7 Si 0.789 3.211 8 H -0.215 1.215 9 H -0.209 1.209 10 H -0.204 1.204 11 C 0.024 3.976 12 C 0.016 3.984 13 H 0.044 0.956 14 C -0.144 4.144 15 C -0.160 4.160 16 C -0.033 4.033 17 N -0.337 5.337 18 C 0.280 3.720 19 O -0.445 6.445 20 C 0.064 3.936 21 H 0.155 0.845 22 F -0.181 7.181 23 C -0.130 4.130 24 C -0.099 4.099 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.147 4.147 29 C -0.143 4.143 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.092 -26.376 -1.729 27.643 hybrid contribution 0.607 2.034 -0.019 2.123 sum 8.699 -24.342 -1.748 25.908 Atomic orbital electron populations 1.20619 0.81743 0.95967 0.98219 1.44084 1.02450 1.01004 1.85870 1.19311 0.96733 0.86719 1.36351 0.93232 1.25589 0.98558 1.01093 0.98847 1.70189 1.19380 1.27203 1.40769 0.85366 0.77512 0.80469 0.77783 1.21510 1.20884 1.20369 1.21150 0.95157 0.87400 0.93942 1.22270 0.90863 0.86126 0.99120 0.95638 1.22480 0.95010 0.98682 0.98268 1.22859 0.99687 0.96352 0.97053 1.22825 0.95844 0.89161 0.95444 1.48878 1.15621 1.15150 1.54090 1.21270 0.81490 0.89817 0.79463 1.90752 1.71752 1.41229 1.40773 1.21676 0.86701 0.95009 0.90235 0.84484 1.92856 1.61577 1.95590 1.68077 1.20968 1.01322 0.95705 0.95022 1.19683 0.94472 0.94180 1.01584 1.21343 1.00994 0.91494 0.99692 1.21491 0.94901 0.98627 0.99060 1.21527 0.95225 0.98616 0.98889 1.21404 1.00857 0.92344 1.00084 1.21244 0.94527 0.98857 0.99669 0.96635 0.94923 0.96718 0.94085 0.95385 0.91886 0.90073 0.92617 0.91162 0.86281 0.88035 0.87873 0.90683 0.87555 0.83887 0.83473 0.83859 0.84637 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 8.21 127.77 1.05 9.83 16 2 N -0.61 -32.09 2.82 -726.94 -2.05 -34.14 16 3 C -0.26 -15.50 9.67 84.03 0.81 -14.68 16 4 H 0.05 3.08 7.87 -2.91 -0.02 3.06 16 5 C -0.05 -2.66 5.08 84.86 0.43 -2.23 16 6 N -0.93 -55.39 10.64 21.65 0.23 -55.16 16 7 Si 0.96 47.85 29.58 68.60 2.03 49.88 16 8 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 11 C 0.15 6.68 5.17 86.38 0.45 7.12 16 12 C 0.12 4.77 3.11 45.34 0.14 4.91 16 13 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 14 C -0.11 -3.33 5.84 31.87 0.19 -3.14 16 15 C -0.12 -2.44 7.09 32.07 0.23 -2.21 16 16 C 0.09 1.61 6.40 86.86 0.56 2.17 16 17 N -0.60 -18.41 3.06 -788.07 -2.42 -20.83 16 18 C 0.49 16.37 7.01 87.65 0.61 16.99 16 19 O -0.57 -25.09 15.37 -3.02 -0.05 -25.13 16 20 C 0.10 2.44 3.47 29.85 0.10 2.54 16 21 H 0.14 2.13 6.30 -2.39 -0.02 2.12 16 22 F -0.20 -5.66 16.75 44.97 0.75 -4.91 16 23 C -0.09 -2.02 4.83 29.85 0.14 -1.88 16 24 C -0.10 -1.89 5.00 -19.87 -0.10 -1.99 16 25 C -0.12 -1.71 9.70 22.27 0.22 -1.49 16 26 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 27 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 28 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 29 C -0.12 -2.47 9.55 22.27 0.21 -2.26 16 30 H 0.02 0.80 7.41 -2.38 -0.02 0.78 16 31 H 0.03 1.33 7.80 -2.38 -0.02 1.31 16 32 H 0.01 0.77 7.20 -2.39 -0.02 0.75 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.03 1.40 6.44 -2.39 -0.02 1.38 16 35 H 0.06 2.42 7.64 -2.39 -0.02 2.40 16 36 H 0.08 2.40 7.48 -2.38 -0.02 2.39 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.32 7.00 -2.39 -0.02 1.30 16 41 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 43 H 0.11 2.04 8.08 -2.39 -0.02 2.02 16 44 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 45 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.11 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -77.57 390.34 5.15 -72.42 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.94 Total: 8.72 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.71 Total: 9.15 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.24 Total: -110.13 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.75 Total: -4.91 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -77.57 5.15 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725056989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.280 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds