Wall clock time and date at job start Tue Mar 31 2020 19:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99482 * 2 1 4 4 H 1.48506 * 109.47051 * 269.99711 * 3 2 1 5 5 H 1.48498 * 109.47544 * 29.99955 * 3 2 1 6 6 H 1.48507 * 109.46862 * 150.00155 * 3 2 1 7 7 C 1.38807 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99870 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47208 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.32775 * 57.75866 * 11 10 9 13 13 C 1.54604 * 110.37297 * 179.97438 * 11 10 9 14 14 C 1.53994 * 103.88963 * 142.82234 * 13 11 10 15 15 C 1.53976 * 104.56999 * 359.87824 * 14 13 11 16 16 O 1.44469 * 110.46208 * 295.45601 * 11 10 9 17 17 C 1.52399 * 110.26946 * 118.41671 * 14 13 11 18 18 C 1.53290 * 109.42707 * 62.67928 * 17 14 13 19 19 N 1.46932 * 108.72409 * 53.67162 * 18 17 14 20 20 C 1.34773 * 120.58514 * 125.82283 * 19 18 17 21 21 O 1.21279 * 120.00299 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99788 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.55859 * 325.69016 * 22 20 19 24 24 C 1.52999 * 117.49887 * 111.37735 * 22 20 19 25 25 C 1.52988 * 117.50006 * 179.97438 * 22 20 19 26 26 C 1.53000 * 138.59063 * 121.61713 * 25 22 20 27 27 C 1.52997 * 138.58747 * 23.40045 * 25 22 20 28 28 C 1.46937 * 118.82378 * 306.09026 * 19 18 17 29 29 C 1.52409 * 110.25850 * 241.36390 * 14 13 11 30 30 H 0.97000 * 120.00201 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00121 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47675 * 59.99540 * 10 9 7 33 33 H 1.08998 * 109.47459 * 299.99657 * 10 9 7 34 34 H 1.09004 * 110.54366 * 24.22266 * 13 11 10 35 35 H 1.09003 * 110.54743 * 261.43082 * 13 11 10 36 36 H 1.08995 * 110.39024 * 95.17068 * 15 14 13 37 37 H 1.09001 * 110.39030 * 217.55543 * 15 14 13 38 38 H 1.09000 * 109.48272 * 302.69105 * 17 14 13 39 39 H 1.08997 * 109.48889 * 182.67155 * 17 14 13 40 40 H 1.08999 * 109.59055 * 293.90202 * 18 17 14 41 41 H 1.08998 * 109.72198 * 173.51746 * 18 17 14 42 42 H 1.09000 * 117.50065 * 0.02562 * 24 22 20 43 43 H 1.09001 * 117.51954 * 214.96789 * 24 22 20 44 44 H 1.08999 * 117.49753 * 121.61858 * 26 25 22 45 45 H 1.09004 * 117.49237 * 336.59594 * 26 25 22 46 46 H 1.08999 * 117.49685 * 23.40899 * 27 25 22 47 47 H 1.08997 * 117.50044 * 238.38252 * 27 25 22 48 48 H 1.09006 * 109.59216 * 173.68734 * 28 19 18 49 49 H 1.08998 * 109.59764 * 294.14852 * 28 19 18 50 50 H 1.08998 * 109.47854 * 57.31085 * 29 14 13 51 51 H 1.08992 * 109.47847 * 177.34099 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.4032 -4.7534 -0.8631 13 6 1.8161 -6.1705 0.0005 14 6 0.9558 -7.0729 0.9045 15 6 -0.2114 -6.1736 1.3513 16 8 0.2942 -4.8253 1.2236 17 6 0.4311 -8.2655 0.1140 18 6 1.6114 -9.1152 -0.3704 19 7 2.4516 -9.4579 0.7852 20 6 2.7579 -10.7426 1.0534 21 8 2.3388 -11.6280 0.3384 22 6 3.6203 -11.0792 2.2427 23 1 4.3976 -10.3529 2.4805 24 6 2.9581 -11.8132 3.4104 25 6 3.9319 -12.5557 2.4941 26 6 5.1559 -13.4654 2.6169 27 6 3.9933 -13.8658 1.7062 28 6 2.9470 -8.3755 1.6467 29 6 1.7623 -7.5308 2.1139 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6850 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8894 34 1 2.8158 -6.0520 0.4186 35 1 1.8685 -6.5787 -1.0088 36 1 -1.0735 -6.3189 0.7004 37 1 -0.4772 -6.3831 2.3874 38 1 -0.1378 -7.9103 -0.7452 39 1 -0.2138 -8.8695 0.7522 40 1 2.1978 -8.5480 -1.0933 41 1 1.2407 -10.0282 -0.8363 42 1 1.8988 -12.0531 3.3184 43 1 3.2997 -11.5703 4.4166 44 1 5.2800 -14.0192 3.5475 45 1 6.0784 -13.1350 2.1395 46 1 4.1511 -13.7987 0.6298 47 1 3.3528 -14.6830 2.0377 48 1 3.4548 -8.8008 2.5124 49 1 3.6399 -7.7492 1.0848 50 1 2.1274 -6.6599 2.6582 51 1 1.1283 -8.1290 2.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725348741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:19 Heat of formation + Delta-G solvation = -5.578032 kcal Electronic energy + Delta-G solvation = -29317.920923 eV Core-core repulsion = 25412.484313 eV Total energy + Delta-G solvation = -3905.436610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.04782 -39.82190 -37.99539 -36.75230 -34.53126 -33.55304 -32.84511 -31.62394 -31.48890 -29.44496 -27.66437 -25.41773 -24.84283 -23.61944 -22.74492 -22.69632 -22.61755 -20.73404 -20.58923 -19.30002 -18.23112 -17.61547 -17.06902 -16.24383 -16.09633 -15.65969 -15.36593 -15.24745 -15.13503 -14.94055 -14.70663 -14.43148 -14.17096 -13.75174 -13.36819 -13.18177 -12.96473 -12.86191 -12.67668 -12.55717 -12.09398 -12.04400 -11.86094 -11.82224 -11.51298 -11.43022 -11.15171 -10.95492 -10.78973 -10.61043 -10.57500 -10.49430 -10.44754 -10.41505 -10.34128 -9.98181 -9.89850 -9.62929 -9.34027 -8.87035 -8.84234 -6.86231 -5.70559 -2.99200 2.19955 2.59642 3.32922 3.38408 3.46314 3.50868 3.53159 3.87748 4.10987 4.20255 4.35553 4.39985 4.40601 4.58405 4.63304 4.72654 4.80101 4.89790 4.99345 5.04652 5.08917 5.14048 5.24560 5.26202 5.28528 5.30682 5.33007 5.37803 5.42506 5.49267 5.54550 5.55962 5.58325 5.61684 5.74734 5.76670 5.78237 5.81774 5.82055 5.94474 6.01314 6.09770 6.13403 6.29709 6.36894 6.58287 6.76462 7.12815 7.26614 7.72983 7.93311 8.47745 9.59070 10.17821 10.53301 11.52194 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.002075 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.367247 B =13488.215186 C =13875.916671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.161 3.839 11 C 0.071 3.929 12 H 0.066 0.934 13 C -0.140 4.140 14 C -0.090 4.090 15 C 0.052 3.948 16 O -0.352 6.352 17 C -0.119 4.119 18 C 0.111 3.889 19 N -0.606 5.606 20 C 0.544 3.456 21 O -0.538 6.538 22 C -0.143 4.143 23 H 0.125 0.875 24 C -0.099 4.099 25 C -0.202 4.202 26 C -0.130 4.130 27 C -0.113 4.113 28 C 0.105 3.895 29 C -0.118 4.118 30 H 0.254 0.746 31 H 0.387 0.613 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 -27.849 5.576 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.033 3.967 11 C 0.013 3.987 12 H 0.084 0.916 13 C -0.178 4.178 14 C -0.091 4.091 15 C -0.025 4.025 16 O -0.271 6.271 17 C -0.157 4.157 18 C -0.011 4.011 19 N -0.339 5.339 20 C 0.332 3.668 21 O -0.415 6.415 22 C -0.164 4.164 23 H 0.143 0.857 24 C -0.136 4.136 25 C -0.203 4.203 26 C -0.166 4.166 27 C -0.150 4.150 28 C -0.018 4.018 29 C -0.156 4.156 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.314 -28.002 5.333 29.196 hybrid contribution 0.150 1.040 -0.117 1.057 sum 6.464 -26.962 5.216 28.212 Atomic orbital electron populations 1.69678 1.05093 1.25526 1.57696 1.24751 0.95526 0.97665 1.03140 0.86189 0.78625 0.83913 0.77445 1.21784 1.21783 1.20800 1.19222 0.90952 0.84214 1.42646 0.91260 1.42281 1.06077 0.99650 1.89242 1.20719 0.92649 0.85089 0.98222 1.23298 0.92885 0.94772 0.87774 0.91593 1.23093 0.99882 0.94988 0.99827 1.21489 0.96426 0.95451 0.95710 1.23389 0.94888 0.82828 1.01416 1.89345 1.68821 1.26980 1.41918 1.21851 0.97431 0.95952 1.00463 1.21666 0.91672 1.00174 0.87551 1.48036 1.51254 1.05811 1.28792 1.19678 0.80124 0.81947 0.85054 1.90678 1.54053 1.46610 1.50204 1.21999 1.02331 0.94777 0.97272 0.85685 1.22646 0.98030 0.99075 0.93833 1.21161 1.03149 0.90445 1.05551 1.22774 0.92015 1.00112 1.01738 1.22594 0.99865 0.94405 0.98129 1.21796 0.96654 0.88832 0.94469 1.21773 0.96784 0.99994 0.97054 0.93571 0.77877 0.95775 0.95327 0.90277 0.90578 0.92539 0.89577 0.90211 0.91322 0.91096 0.88994 0.88109 0.87474 0.88284 0.88506 0.88229 0.88543 0.89462 0.90768 0.89565 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.22 5.57 -59.91 -0.33 -19.55 16 10 C 0.16 3.29 5.88 -4.05 -0.02 3.27 16 11 C 0.07 1.17 3.34 -25.89 -0.09 1.08 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.14 -1.65 4.97 -25.37 -0.13 -1.78 16 14 C -0.09 -0.93 0.68 -154.09 -0.11 -1.03 16 15 C 0.05 0.66 6.72 37.67 0.25 0.92 16 16 O -0.35 -6.29 11.32 -35.23 -0.40 -6.69 16 17 C -0.12 -1.08 4.63 -26.89 -0.12 -1.21 16 18 C 0.11 1.06 6.13 -3.66 -0.02 1.04 16 19 N -0.61 -5.76 2.97 -172.92 -0.51 -6.27 16 20 C 0.54 5.95 7.48 -10.99 -0.08 5.86 16 21 O -0.54 -7.67 15.65 5.56 0.09 -7.58 16 22 C -0.14 -1.20 4.96 -91.78 -0.46 -1.65 16 23 H 0.13 0.82 6.81 -51.93 -0.35 0.47 16 24 C -0.10 -0.71 10.23 -26.76 -0.27 -0.98 16 25 C -0.20 -1.70 5.05 -154.55 -0.78 -2.48 16 26 C -0.13 -0.85 10.53 -26.73 -0.28 -1.13 16 27 C -0.11 -0.93 10.16 -26.73 -0.27 -1.20 16 28 C 0.11 0.83 5.97 -3.90 -0.02 0.80 16 29 C -0.12 -1.05 4.61 -27.13 -0.13 -1.17 16 30 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.39 10.93 7.67 -40.82 -0.31 10.62 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.91 6.33 -51.93 -0.33 0.58 16 35 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 36 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 38 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 6.85 -51.93 -0.36 0.29 16 41 H 0.09 0.98 7.00 -51.93 -0.36 0.61 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.54 5.66 -51.93 -0.29 0.24 16 49 H 0.07 0.58 6.85 -51.93 -0.36 0.23 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -34.65 397.68 -10.80 -45.45 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.56 Total: 6.37 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.77 Total: -7.23 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.12 Total: -54.05 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.31 Total: -14.28 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.65 -10.80 -45.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725348741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.871 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds