Wall clock time and date at job start Tue Mar 31 2020 19:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99482 * 2 1 4 4 H 1.48506 * 109.47051 * 269.99711 * 3 2 1 5 5 H 1.48498 * 109.47544 * 29.99955 * 3 2 1 6 6 H 1.48507 * 109.46862 * 150.00155 * 3 2 1 7 7 C 1.38807 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00378 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99870 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47208 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.32775 * 57.75866 * 11 10 9 13 13 C 1.54604 * 110.37297 * 179.97438 * 11 10 9 14 14 C 1.53994 * 103.88963 * 142.82234 * 13 11 10 15 15 C 1.53976 * 104.56999 * 359.87824 * 14 13 11 16 16 O 1.44469 * 110.46208 * 295.45601 * 11 10 9 17 17 C 1.52399 * 110.26946 * 118.41671 * 14 13 11 18 18 C 1.53290 * 109.42707 * 62.67928 * 17 14 13 19 19 N 1.46932 * 108.72409 * 53.67162 * 18 17 14 20 20 C 1.34773 * 120.58514 * 125.82283 * 19 18 17 21 21 O 1.21279 * 120.00299 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99788 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.55859 * 325.69016 * 22 20 19 24 24 C 1.52999 * 117.49887 * 111.37735 * 22 20 19 25 25 C 1.52988 * 117.50006 * 179.97438 * 22 20 19 26 26 C 1.53000 * 138.59063 * 121.61713 * 25 22 20 27 27 C 1.52997 * 138.58747 * 23.40045 * 25 22 20 28 28 C 1.46937 * 118.82378 * 306.09026 * 19 18 17 29 29 C 1.52409 * 110.25850 * 241.36390 * 14 13 11 30 30 H 0.97000 * 120.00201 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00121 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47675 * 59.99540 * 10 9 7 33 33 H 1.08998 * 109.47459 * 299.99657 * 10 9 7 34 34 H 1.09004 * 110.54366 * 24.22266 * 13 11 10 35 35 H 1.09003 * 110.54743 * 261.43082 * 13 11 10 36 36 H 1.08995 * 110.39024 * 95.17068 * 15 14 13 37 37 H 1.09001 * 110.39030 * 217.55543 * 15 14 13 38 38 H 1.09000 * 109.48272 * 302.69105 * 17 14 13 39 39 H 1.08997 * 109.48889 * 182.67155 * 17 14 13 40 40 H 1.08999 * 109.59055 * 293.90202 * 18 17 14 41 41 H 1.08998 * 109.72198 * 173.51746 * 18 17 14 42 42 H 1.09000 * 117.50065 * 0.02562 * 24 22 20 43 43 H 1.09001 * 117.51954 * 214.96789 * 24 22 20 44 44 H 1.08999 * 117.49753 * 121.61858 * 26 25 22 45 45 H 1.09004 * 117.49237 * 336.59594 * 26 25 22 46 46 H 1.08999 * 117.49685 * 23.40899 * 27 25 22 47 47 H 1.08997 * 117.50044 * 238.38252 * 27 25 22 48 48 H 1.09006 * 109.59216 * 173.68734 * 28 19 18 49 49 H 1.08998 * 109.59764 * 294.14852 * 28 19 18 50 50 H 1.08998 * 109.47854 * 57.31085 * 29 14 13 51 51 H 1.08992 * 109.47847 * 177.34099 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.4032 -4.7534 -0.8631 13 6 1.8161 -6.1705 0.0005 14 6 0.9558 -7.0729 0.9045 15 6 -0.2114 -6.1736 1.3513 16 8 0.2942 -4.8253 1.2236 17 6 0.4311 -8.2655 0.1140 18 6 1.6114 -9.1152 -0.3704 19 7 2.4516 -9.4579 0.7852 20 6 2.7579 -10.7426 1.0534 21 8 2.3388 -11.6280 0.3384 22 6 3.6203 -11.0792 2.2427 23 1 4.3976 -10.3529 2.4805 24 6 2.9581 -11.8132 3.4104 25 6 3.9319 -12.5557 2.4941 26 6 5.1559 -13.4654 2.6169 27 6 3.9933 -13.8658 1.7062 28 6 2.9470 -8.3755 1.6467 29 6 1.7623 -7.5308 2.1139 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6850 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8894 34 1 2.8158 -6.0520 0.4186 35 1 1.8685 -6.5787 -1.0088 36 1 -1.0735 -6.3189 0.7004 37 1 -0.4772 -6.3831 2.3874 38 1 -0.1378 -7.9103 -0.7452 39 1 -0.2138 -8.8695 0.7522 40 1 2.1978 -8.5480 -1.0933 41 1 1.2407 -10.0282 -0.8363 42 1 1.8988 -12.0531 3.3184 43 1 3.2997 -11.5703 4.4166 44 1 5.2800 -14.0192 3.5475 45 1 6.0784 -13.1350 2.1395 46 1 4.1511 -13.7987 0.6298 47 1 3.3528 -14.6830 2.0377 48 1 3.4548 -8.8008 2.5124 49 1 3.6399 -7.7492 1.0848 50 1 2.1274 -6.6599 2.6582 51 1 1.1283 -8.1290 2.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725348741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:18 Heat of formation + Delta-G solvation = -27.134328 kcal Electronic energy + Delta-G solvation = -29318.855674 eV Core-core repulsion = 25412.484313 eV Total energy + Delta-G solvation = -3906.371361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.90598 -40.72707 -38.72914 -37.70549 -36.38913 -34.46151 -33.52898 -33.48439 -32.20137 -31.01965 -28.60222 -27.05464 -25.60176 -24.51222 -24.37171 -23.42003 -23.28460 -22.16035 -21.27899 -20.00825 -19.19019 -19.01818 -18.37157 -17.29930 -16.98328 -16.71102 -16.50181 -16.19937 -16.08005 -15.85111 -15.75652 -15.49105 -15.12740 -14.95975 -14.90284 -14.52198 -14.14470 -13.82757 -13.51992 -13.42700 -13.36530 -13.09882 -12.96654 -12.75400 -12.63768 -12.42590 -12.35681 -12.23412 -12.20465 -12.02600 -11.87672 -11.52875 -11.41576 -11.29799 -11.17432 -11.03448 -10.96531 -10.92878 -10.69193 -10.55563 -9.65143 -8.99529 -7.93431 -5.22986 1.43800 1.47090 1.49914 1.58343 1.89019 2.56469 2.73511 2.80037 3.00760 3.31698 3.39880 3.44658 3.54576 3.59255 3.78121 3.84762 3.90016 4.02115 4.06098 4.13590 4.19060 4.30747 4.33162 4.46181 4.47761 4.51624 4.56939 4.65792 4.67389 4.68421 4.74893 4.77044 4.79097 4.80846 4.82846 4.83797 4.96090 4.99286 5.01546 5.02895 5.03985 5.04550 5.20634 5.26545 5.27589 5.34686 5.48611 5.55760 6.04742 6.27943 6.38116 7.14685 7.33626 8.10184 8.33353 9.30390 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.002075 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.367247 B =13488.215186 C =13875.916671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.157 3.843 11 C 0.074 3.926 12 H 0.056 0.944 13 C -0.128 4.128 14 C -0.079 4.079 15 C 0.046 3.954 16 O -0.391 6.391 17 C -0.110 4.110 18 C 0.111 3.889 19 N -0.603 5.603 20 C 0.537 3.463 21 O -0.581 6.581 22 C -0.148 4.148 23 H 0.148 0.852 24 C -0.086 4.086 25 C -0.227 4.227 26 C -0.108 4.108 27 C -0.132 4.132 28 C 0.106 3.894 29 C -0.114 4.114 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 -28.639 6.740 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.031 3.969 11 C 0.016 3.984 12 H 0.074 0.926 13 C -0.166 4.166 14 C -0.079 4.079 15 C -0.030 4.030 16 O -0.310 6.310 17 C -0.148 4.148 18 C -0.011 4.011 19 N -0.335 5.335 20 C 0.327 3.673 21 O -0.461 6.461 22 C -0.168 4.168 23 H 0.165 0.835 24 C -0.123 4.123 25 C -0.228 4.228 26 C -0.145 4.145 27 C -0.169 4.169 28 C -0.016 4.016 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.128 0.872 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.292 -28.811 6.504 30.678 hybrid contribution -0.482 1.220 -0.493 1.401 sum 7.811 -27.592 6.011 29.299 Atomic orbital electron populations 1.69853 1.06786 1.26028 1.59523 1.25656 0.96455 1.01380 1.03755 0.85076 0.77658 0.79126 0.77497 1.21219 1.22257 1.19229 1.19681 0.91563 0.85347 1.41179 0.90378 1.42529 1.05686 1.01202 1.89263 1.20924 0.93423 0.84250 0.98310 1.23175 0.92391 0.95548 0.87263 0.92611 1.23037 0.99796 0.92435 1.01324 1.21396 0.95381 0.95016 0.96156 1.23615 0.95814 0.81188 1.02420 1.89299 1.69429 1.30057 1.42220 1.21773 0.97288 0.95266 1.00496 1.21639 0.91938 0.99631 0.87890 1.48115 1.50732 1.05917 1.28701 1.20189 0.79943 0.81812 0.85359 1.90660 1.55821 1.47817 1.51798 1.22066 1.02702 0.95387 0.96675 0.83481 1.22726 0.97305 0.97712 0.94556 1.21431 1.04680 0.90417 1.06237 1.22849 0.91302 0.98596 1.01721 1.22583 1.01746 0.95069 0.97480 1.21920 0.96255 0.88294 0.95126 1.21741 0.97097 1.00056 0.96329 0.94068 0.79533 0.95842 0.94168 0.89412 0.88938 0.92201 0.88442 0.89748 0.91169 0.90367 0.90360 0.89162 0.84867 0.86470 0.87884 0.90084 0.88204 0.87155 0.90217 0.90027 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.74 -39.76 5.57 -343.47 -1.91 -41.68 16 10 C 0.16 6.38 5.88 86.38 0.51 6.89 16 11 C 0.07 2.41 3.34 31.14 0.10 2.52 16 12 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 13 C -0.13 -2.78 4.97 31.48 0.16 -2.62 16 14 C -0.08 -1.48 0.68 -51.91 -0.04 -1.51 16 15 C 0.05 1.12 6.72 72.31 0.49 1.61 16 16 O -0.39 -13.93 11.32 -148.98 -1.69 -15.61 16 17 C -0.11 -1.82 4.63 30.49 0.14 -1.68 16 18 C 0.11 1.96 6.13 86.39 0.53 2.49 16 19 N -0.60 -10.30 2.97 -819.40 -2.43 -12.73 16 20 C 0.54 11.11 7.48 87.66 0.66 11.76 16 21 O -0.58 -16.64 15.65 -3.03 -0.05 -16.69 16 22 C -0.15 -2.14 4.96 -11.54 -0.06 -2.20 16 23 H 0.15 1.42 6.81 -2.39 -0.02 1.40 16 24 C -0.09 -1.03 10.23 30.58 0.31 -0.72 16 25 C -0.23 -3.44 5.05 -52.21 -0.26 -3.70 16 26 C -0.11 -1.20 10.53 30.60 0.32 -0.87 16 27 C -0.13 -2.12 10.16 30.60 0.31 -1.81 16 28 C 0.11 1.35 5.97 86.24 0.51 1.86 16 29 C -0.11 -1.74 4.61 30.34 0.14 -1.60 16 30 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.37 21.68 7.67 -92.71 -0.71 20.97 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.78 6.33 -2.38 -0.02 1.77 16 35 H 0.09 1.73 6.58 -2.39 -0.02 1.71 16 36 H 0.06 1.40 7.83 -2.39 -0.02 1.38 16 37 H 0.10 2.11 7.85 -2.39 -0.02 2.10 16 38 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.27 6.85 -2.39 -0.02 1.25 16 41 H 0.08 1.64 7.00 -2.39 -0.02 1.62 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.11 0.93 5.66 -2.38 -0.01 0.92 16 49 H 0.08 0.98 6.85 -2.39 -0.02 0.96 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.33 397.68 1.58 -74.75 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.22 Total: 31.44 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.13 Total: -7.21 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.06 Total: -115.66 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.73 Total: -32.30 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -76.33 1.58 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725348741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.618 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds