Wall clock time and date at job start Tue Mar 31 2020 18:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00201 * 2 1 4 4 H 1.07997 * 120.00170 * 203.18908 * 3 2 1 5 5 C 1.38813 * 119.99603 * 23.18354 * 3 2 1 6 6 N 1.31617 * 120.00134 * 13.72288 * 5 3 2 7 7 Si 1.86805 * 119.99831 * 193.71733 * 5 3 2 8 8 H 1.48503 * 109.47066 * 0.02562 * 7 5 3 9 9 H 1.48490 * 109.47012 * 120.00383 * 7 5 3 10 10 H 1.48499 * 109.47063 * 240.00521 * 7 5 3 11 11 C 1.46504 * 119.99821 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47263 * 89.99982 * 11 2 1 13 13 H 1.09001 * 109.46510 * 59.99920 * 12 11 2 14 14 O 1.42896 * 109.47057 * 299.99897 * 12 11 2 15 15 C 1.52998 * 109.47196 * 179.97438 * 12 11 2 16 16 N 1.46494 * 109.47079 * 185.00045 * 15 12 11 17 17 C 1.46497 * 120.00402 * 270.00302 * 16 15 12 18 18 C 1.34781 * 119.99832 * 90.00165 * 16 15 12 19 19 O 1.21276 * 119.99901 * 0.02562 * 18 16 15 20 20 C 1.50697 * 119.99860 * 179.97438 * 18 16 15 21 21 C 1.53007 * 109.47280 * 180.02562 * 20 18 16 22 22 H 1.09002 * 110.01121 * 305.69952 * 21 20 18 23 23 C 1.54262 * 110.03445 * 184.31016 * 21 20 18 24 24 C 1.54885 * 104.19841 * 217.10467 * 23 21 20 25 25 C 1.54894 * 102.74719 * 37.94214 * 24 23 21 26 26 C 1.53871 * 110.02867 * 67.09070 * 21 20 18 27 27 F 1.39907 * 110.03128 * 238.56921 * 26 21 20 28 28 F 1.39898 * 110.03790 * 0.02562 * 26 21 20 29 29 H 1.08994 * 109.47297 * 275.15725 * 1 2 3 30 30 H 1.08995 * 109.47214 * 35.16355 * 1 2 3 31 31 H 1.08998 * 109.46918 * 155.15917 * 1 2 3 32 32 H 0.97003 * 120.00037 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47065 * 329.99791 * 11 2 1 34 34 H 1.09003 * 109.46920 * 210.00054 * 11 2 1 35 35 H 0.96691 * 114.00286 * 300.00113 * 14 12 11 36 36 H 1.08999 * 109.47268 * 305.00493 * 15 12 11 37 37 H 1.08998 * 109.46909 * 65.00410 * 15 12 11 38 38 H 1.09001 * 109.47464 * 89.99422 * 17 16 15 39 39 H 1.08994 * 109.47683 * 210.00105 * 17 16 15 40 40 H 1.09008 * 109.46719 * 330.00337 * 17 16 15 41 41 H 1.08998 * 109.47649 * 300.00324 * 20 18 16 42 42 H 1.09007 * 109.47348 * 60.00052 * 20 18 16 43 43 H 1.09004 * 110.48736 * 335.78350 * 23 21 20 44 44 H 1.09006 * 110.48727 * 98.29272 * 23 21 20 45 45 H 1.08999 * 110.76055 * 156.25013 * 24 23 21 46 46 H 1.09004 * 110.75931 * 279.44733 * 24 23 21 47 47 H 1.08996 * 110.48809 * 80.73731 * 25 24 23 48 48 H 1.09000 * 110.49087 * 203.38358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1643 1.2236 -0.3683 5 6 1.5397 2.3395 0.4733 6 7 0.4225 2.2571 1.1642 7 14 2.3046 4.0088 0.1297 8 1 3.5484 3.8299 -0.6617 9 1 1.3461 4.8439 -0.6375 10 1 2.6272 4.6793 1.4148 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 1 3.0416 -0.9517 -1.9558 14 8 1.2039 -1.8823 -2.1153 15 6 3.2180 -3.0358 -1.4411 16 7 3.5664 -3.3991 -2.8169 17 6 2.6463 -4.2131 -3.6150 18 6 4.7335 -2.9844 -3.3484 19 8 5.4954 -2.3109 -2.6876 20 6 5.0921 -3.3586 -4.7634 21 6 6.4579 -2.7665 -5.1171 22 1 6.4575 -1.6920 -4.9336 23 6 6.7897 -3.0498 -6.5967 24 6 8.3142 -3.3237 -6.5985 25 6 8.5206 -4.1161 -5.2836 26 6 7.5582 -3.4435 -4.2812 27 9 8.2439 -2.4859 -3.5260 28 9 6.9949 -4.4070 -3.4377 29 1 -0.3633 0.0924 1.0234 30 1 -0.3633 0.8401 -0.5918 31 1 -0.3633 -0.9326 -0.4317 32 1 -0.0036 3.0632 1.4952 33 1 1.6084 -2.0281 0.5148 34 1 3.1499 -1.1382 0.5144 35 1 0.6268 -2.5447 -1.7115 36 1 4.1287 -2.9290 -0.8518 37 1 2.5934 -3.8162 -1.0064 38 1 1.9591 -3.5614 -4.1545 39 1 3.2146 -4.8112 -4.3273 40 1 2.0804 -4.8725 -2.9568 41 1 5.1329 -4.4441 -4.8531 42 1 4.3379 -2.9659 -5.4455 43 1 6.2444 -3.9254 -6.9490 44 1 6.5553 -2.1820 -7.2132 45 1 8.5974 -3.9267 -7.4612 46 1 8.8747 -2.3890 -6.5815 47 1 8.2549 -5.1638 -5.4238 48 1 9.5515 -4.0255 -4.9414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725721387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:58 Heat of formation + Delta-G solvation = -166.243414 kcal Electronic energy + Delta-G solvation = -30783.716647 eV Core-core repulsion = 26317.083533 eV Total energy + Delta-G solvation = -4466.633114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.85772 -46.90964 -39.97279 -37.91301 -37.17928 -35.25370 -34.44886 -32.22341 -31.28082 -29.74063 -28.18906 -26.83779 -26.70874 -25.69062 -24.64973 -22.04337 -21.62423 -20.54058 -20.52425 -19.05634 -17.78814 -17.21983 -16.86481 -16.64907 -16.27784 -16.11094 -15.65852 -15.05798 -14.87772 -14.70893 -14.56516 -14.26807 -14.02533 -13.64355 -13.49824 -13.26227 -13.20303 -12.95833 -12.92577 -12.83822 -12.51137 -12.39203 -12.03022 -11.86470 -11.76724 -11.63272 -11.57821 -11.33774 -11.08930 -11.06284 -10.80802 -10.64833 -10.62915 -10.44897 -10.30061 -9.99806 -9.80591 -9.75691 -9.58679 -8.56390 -8.28910 -6.59417 -5.63040 -3.09162 2.76349 3.04459 3.44679 3.51558 3.55717 3.59471 3.72460 3.96064 4.09151 4.49602 4.57869 4.62902 4.72892 4.86397 4.91519 4.96862 5.02626 5.03388 5.15940 5.23258 5.25876 5.34073 5.34624 5.43419 5.46475 5.51050 5.52503 5.58861 5.70086 5.73913 5.88957 5.91232 5.99889 6.02598 6.09422 6.58652 6.69516 6.83872 6.89787 7.45319 7.49821 7.80693 7.91162 8.22614 8.30552 8.49429 9.33449 9.96435 10.45122 11.41079 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003008 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.937159 B = 9307.815775 C =10343.018685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.592 5.592 3 C -0.251 4.251 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.096 0.904 14 O -0.550 6.550 15 C 0.085 3.915 16 N -0.608 5.608 17 C 0.082 3.918 18 C 0.511 3.489 19 O -0.529 6.529 20 C -0.132 4.132 21 C -0.120 4.120 22 H 0.109 0.891 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.164 4.164 26 C 0.294 3.706 27 F -0.190 7.190 28 F -0.198 7.198 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.000 1.000 32 H 0.250 0.750 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.357 0.643 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 -19.307 -17.313 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.314 5.314 3 C -0.381 4.381 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C -0.003 4.003 12 C 0.008 3.992 13 H 0.114 0.886 14 O -0.353 6.353 15 C -0.038 4.038 16 N -0.341 5.341 17 C -0.061 4.061 18 C 0.298 3.702 19 O -0.405 6.405 20 C -0.172 4.172 21 C -0.139 4.139 22 H 0.128 0.872 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.203 4.203 26 C 0.258 3.742 27 F -0.170 7.170 28 F -0.179 7.179 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.202 0.798 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.027 -18.334 -17.204 27.454 hybrid contribution -0.007 0.493 0.470 0.681 sum 11.020 -17.841 -16.734 26.829 Atomic orbital electron populations 1.20725 0.82439 0.95559 0.98740 1.43710 1.01860 1.00208 1.85632 1.19237 0.98301 0.85732 1.34829 0.91567 1.24988 0.98006 0.98459 0.98245 1.70087 1.20145 1.26958 1.38174 0.86206 0.78598 0.84427 0.77524 1.20269 1.21662 1.21751 1.21287 0.96956 0.89393 0.92649 1.23252 0.84097 0.94445 0.97365 0.88601 1.86627 1.29208 1.63250 1.56196 1.22341 1.01297 0.98041 0.82156 1.47695 1.18922 1.52892 1.14585 1.21779 0.93599 0.94778 0.95933 1.20447 0.80977 0.79869 0.88887 1.90766 1.49564 1.38010 1.62167 1.21714 0.97311 1.02898 0.95249 1.22637 0.92848 1.03160 0.95304 0.87246 1.22435 0.96160 1.02889 0.94102 1.22462 0.96317 1.00686 0.96537 1.23417 1.00288 1.01197 0.95353 1.21608 0.89702 0.79380 0.83545 1.93041 1.80495 1.64787 1.78710 1.92971 1.86084 1.64330 1.74501 0.95584 0.94437 0.98151 0.93941 0.94451 0.92616 0.79836 0.89245 0.90827 0.91861 0.91754 0.91306 0.88318 0.87938 0.90377 0.89938 0.89985 0.90345 0.88604 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.34 8.66 59.85 0.52 4.86 16 2 N -0.59 -15.55 2.84 -181.12 -0.51 -16.06 16 3 C -0.25 -7.34 9.65 -15.06 -0.15 -7.48 16 4 H 0.07 1.94 7.87 -52.49 -0.41 1.53 16 5 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 6 N -0.91 -27.60 10.76 55.49 0.60 -27.01 16 7 Si 0.90 23.10 29.58 -169.99 -5.03 18.07 16 8 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 11 C 0.13 2.64 5.34 -4.04 -0.02 2.62 16 12 C 0.07 1.31 3.48 -26.73 -0.09 1.21 16 13 H 0.10 2.16 8.14 -51.93 -0.42 1.73 16 14 O -0.55 -9.59 11.70 -35.23 -0.41 -10.01 16 15 C 0.09 1.25 5.11 -4.05 -0.02 1.23 16 16 N -0.61 -8.06 2.84 -181.58 -0.52 -8.58 16 17 C 0.08 0.75 9.89 59.85 0.59 1.34 16 18 C 0.51 7.50 6.55 -10.99 -0.07 7.43 16 19 O -0.53 -10.11 14.08 5.56 0.08 -10.03 16 20 C -0.13 -1.31 3.19 -27.88 -0.09 -1.40 16 21 C -0.12 -1.22 2.40 -89.50 -0.21 -1.44 16 22 H 0.11 1.35 7.82 -51.93 -0.41 0.94 16 23 C -0.12 -0.74 6.36 -25.08 -0.16 -0.90 16 24 C -0.12 -0.71 6.91 -24.74 -0.17 -0.88 16 25 C -0.16 -1.25 6.41 -25.01 -0.16 -1.41 16 26 C 0.29 3.47 1.79 -25.55 -0.05 3.42 16 27 F -0.19 -2.90 16.74 2.25 0.04 -2.87 16 28 F -0.20 -2.71 14.04 2.25 0.03 -2.68 16 29 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 30 H 0.04 1.04 7.37 -51.93 -0.38 0.66 16 31 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 35 H 0.36 4.88 8.79 45.56 0.40 5.29 16 36 H 0.09 1.47 7.42 -51.93 -0.39 1.08 16 37 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.43 6.44 -51.93 -0.33 0.09 16 40 H 0.07 0.52 7.89 -51.92 -0.41 0.11 16 41 H 0.10 0.79 6.92 -51.93 -0.36 0.43 16 42 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 48 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -36.84 384.80 -7.30 -44.14 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.20 Total: 0.70 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.17 Total: 8.53 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.43 Total: -51.65 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.33 Total: -20.04 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.07 Total: -5.55 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.84 -7.30 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725721387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.107 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds