Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00201 * 2 1 4 4 H 1.07997 * 120.00170 * 203.18908 * 3 2 1 5 5 C 1.38813 * 119.99603 * 23.18354 * 3 2 1 6 6 N 1.31617 * 120.00134 * 13.72288 * 5 3 2 7 7 Si 1.86805 * 119.99831 * 193.71733 * 5 3 2 8 8 H 1.48503 * 109.47066 * 0.02562 * 7 5 3 9 9 H 1.48490 * 109.47012 * 120.00383 * 7 5 3 10 10 H 1.48499 * 109.47063 * 240.00521 * 7 5 3 11 11 C 1.46504 * 119.99821 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47263 * 89.99982 * 11 2 1 13 13 H 1.09001 * 109.46510 * 59.99920 * 12 11 2 14 14 O 1.42896 * 109.47057 * 299.99897 * 12 11 2 15 15 C 1.52998 * 109.47196 * 179.97438 * 12 11 2 16 16 N 1.46494 * 109.47079 * 185.00045 * 15 12 11 17 17 C 1.46497 * 120.00402 * 270.00302 * 16 15 12 18 18 C 1.34781 * 119.99832 * 90.00165 * 16 15 12 19 19 O 1.21276 * 119.99901 * 0.02562 * 18 16 15 20 20 C 1.50697 * 119.99860 * 179.97438 * 18 16 15 21 21 C 1.53007 * 109.47280 * 180.02562 * 20 18 16 22 22 H 1.09002 * 110.01121 * 305.69952 * 21 20 18 23 23 C 1.54262 * 110.03445 * 184.31016 * 21 20 18 24 24 C 1.54885 * 104.19841 * 217.10467 * 23 21 20 25 25 C 1.54894 * 102.74719 * 37.94214 * 24 23 21 26 26 C 1.53871 * 110.02867 * 67.09070 * 21 20 18 27 27 F 1.39907 * 110.03128 * 238.56921 * 26 21 20 28 28 F 1.39898 * 110.03790 * 0.02562 * 26 21 20 29 29 H 1.08994 * 109.47297 * 275.15725 * 1 2 3 30 30 H 1.08995 * 109.47214 * 35.16355 * 1 2 3 31 31 H 1.08998 * 109.46918 * 155.15917 * 1 2 3 32 32 H 0.97003 * 120.00037 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47065 * 329.99791 * 11 2 1 34 34 H 1.09003 * 109.46920 * 210.00054 * 11 2 1 35 35 H 0.96691 * 114.00286 * 300.00113 * 14 12 11 36 36 H 1.08999 * 109.47268 * 305.00493 * 15 12 11 37 37 H 1.08998 * 109.46909 * 65.00410 * 15 12 11 38 38 H 1.09001 * 109.47464 * 89.99422 * 17 16 15 39 39 H 1.08994 * 109.47683 * 210.00105 * 17 16 15 40 40 H 1.09008 * 109.46719 * 330.00337 * 17 16 15 41 41 H 1.08998 * 109.47649 * 300.00324 * 20 18 16 42 42 H 1.09007 * 109.47348 * 60.00052 * 20 18 16 43 43 H 1.09004 * 110.48736 * 335.78350 * 23 21 20 44 44 H 1.09006 * 110.48727 * 98.29272 * 23 21 20 45 45 H 1.08999 * 110.76055 * 156.25013 * 24 23 21 46 46 H 1.09004 * 110.75931 * 279.44733 * 24 23 21 47 47 H 1.08996 * 110.48809 * 80.73731 * 25 24 23 48 48 H 1.09000 * 110.49087 * 203.38358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1643 1.2236 -0.3683 5 6 1.5397 2.3395 0.4733 6 7 0.4225 2.2571 1.1642 7 14 2.3046 4.0088 0.1297 8 1 3.5484 3.8299 -0.6617 9 1 1.3461 4.8439 -0.6375 10 1 2.6272 4.6793 1.4148 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7111 -1.4417 13 1 3.0416 -0.9517 -1.9558 14 8 1.2039 -1.8823 -2.1153 15 6 3.2180 -3.0358 -1.4411 16 7 3.5664 -3.3991 -2.8169 17 6 2.6463 -4.2131 -3.6150 18 6 4.7335 -2.9844 -3.3484 19 8 5.4954 -2.3109 -2.6876 20 6 5.0921 -3.3586 -4.7634 21 6 6.4579 -2.7665 -5.1171 22 1 6.4575 -1.6920 -4.9336 23 6 6.7897 -3.0498 -6.5967 24 6 8.3142 -3.3237 -6.5985 25 6 8.5206 -4.1161 -5.2836 26 6 7.5582 -3.4435 -4.2812 27 9 8.2439 -2.4859 -3.5260 28 9 6.9949 -4.4070 -3.4377 29 1 -0.3633 0.0924 1.0234 30 1 -0.3633 0.8401 -0.5918 31 1 -0.3633 -0.9326 -0.4317 32 1 -0.0036 3.0632 1.4952 33 1 1.6084 -2.0281 0.5148 34 1 3.1499 -1.1382 0.5144 35 1 0.6268 -2.5447 -1.7115 36 1 4.1287 -2.9290 -0.8518 37 1 2.5934 -3.8162 -1.0064 38 1 1.9591 -3.5614 -4.1545 39 1 3.2146 -4.8112 -4.3273 40 1 2.0804 -4.8725 -2.9568 41 1 5.1329 -4.4441 -4.8531 42 1 4.3379 -2.9659 -5.4455 43 1 6.2444 -3.9254 -6.9490 44 1 6.5553 -2.1820 -7.2132 45 1 8.5974 -3.9267 -7.4612 46 1 8.8747 -2.3890 -6.5815 47 1 8.2549 -5.1638 -5.4238 48 1 9.5515 -4.0255 -4.9414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725721387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -192.450543 kcal Electronic energy + Delta-G solvation = -30784.853073 eV Core-core repulsion = 26317.083533 eV Total energy + Delta-G solvation = -4467.769540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.83114 -47.92944 -41.06922 -39.08041 -38.22336 -36.83819 -35.94787 -33.38350 -32.95766 -31.18782 -28.84020 -28.16756 -27.78270 -27.56868 -25.87987 -23.67757 -22.33570 -22.19370 -21.37543 -20.09595 -18.84882 -18.67924 -18.11703 -17.75049 -17.57308 -17.12626 -16.77956 -16.71281 -16.27055 -16.22273 -15.51919 -15.41876 -15.13830 -14.89356 -14.78267 -14.72699 -14.36470 -14.29376 -13.98521 -13.77942 -13.66850 -13.31887 -13.18760 -13.04644 -12.87612 -12.82832 -12.69766 -12.56278 -12.37889 -12.23456 -12.18172 -12.13271 -12.07884 -12.00628 -11.84303 -11.58940 -11.42930 -11.33644 -10.82427 -10.64301 -9.57070 -8.70268 -7.86272 -5.35262 1.38932 1.39731 1.51464 1.68123 2.06226 2.46181 2.85801 3.03022 3.23407 3.25010 3.35119 3.53296 3.62800 3.74894 3.94502 4.06448 4.14611 4.16389 4.23727 4.30250 4.33812 4.41209 4.47069 4.53048 4.57728 4.62121 4.69637 4.73366 4.82180 4.84502 4.89639 4.95143 5.03235 5.07445 5.09786 5.16281 5.21306 5.34146 5.36862 5.56873 5.58489 5.70335 6.29121 6.44031 6.99972 7.12452 7.23567 7.85451 8.26341 9.14653 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003008 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.937159 B = 9307.815775 C =10343.018685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.611 5.611 3 C -0.265 4.265 4 H 0.053 0.947 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.277 1.277 9 H -0.285 1.285 10 H -0.285 1.285 11 C 0.123 3.877 12 C 0.096 3.904 13 H 0.045 0.955 14 O -0.557 6.557 15 C 0.095 3.905 16 N -0.609 5.609 17 C 0.076 3.924 18 C 0.495 3.505 19 O -0.587 6.587 20 C -0.124 4.124 21 C -0.123 4.123 22 H 0.074 0.926 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.156 4.156 26 C 0.270 3.730 27 F -0.221 7.221 28 F -0.213 7.213 29 H 0.002 0.998 30 H 0.004 0.996 31 H 0.043 0.957 32 H 0.249 0.751 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.378 0.622 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.117 0.883 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -21.971 -19.903 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.334 5.334 3 C -0.395 4.395 4 H 0.071 0.929 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.212 1.212 11 C -0.005 4.005 12 C 0.033 3.967 13 H 0.063 0.937 14 O -0.363 6.363 15 C -0.030 4.030 16 N -0.341 5.341 17 C -0.066 4.066 18 C 0.285 3.715 19 O -0.468 6.468 20 C -0.163 4.163 21 C -0.143 4.143 22 H 0.093 0.907 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.194 4.194 26 C 0.234 3.766 27 F -0.202 7.202 28 F -0.194 7.194 29 H 0.020 0.980 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.226 0.774 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.088 0.912 47 H 0.135 0.865 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.604 -21.062 -19.824 30.807 hybrid contribution 0.090 1.253 1.303 1.810 sum 10.694 -19.808 -18.521 29.151 Atomic orbital electron populations 1.20476 0.82151 0.96261 0.96979 1.43932 1.02341 1.01124 1.85982 1.19405 0.98108 0.87555 1.34478 0.92925 1.25706 0.98761 1.01609 0.98455 1.70219 1.21202 1.27584 1.39042 0.85260 0.77790 0.80367 0.77400 1.20153 1.21166 1.21172 1.21498 0.96164 0.88156 0.94651 1.22619 0.84574 0.95169 0.94316 0.93716 1.86584 1.29111 1.64399 1.56223 1.22079 1.00225 0.97065 0.83583 1.47858 1.19255 1.52722 1.14249 1.22076 0.93352 0.94673 0.96450 1.21429 0.80731 0.78876 0.90507 1.90743 1.51479 1.40603 1.63926 1.21798 0.97635 1.04662 0.92204 1.22681 0.92740 1.00955 0.97891 0.90705 1.22470 0.96674 1.04504 0.90905 1.22509 0.95963 1.00587 0.96463 1.23451 0.99019 1.02180 0.94732 1.22438 0.91273 0.79227 0.83624 1.92969 1.81233 1.66243 1.79749 1.92923 1.86476 1.64719 1.75258 0.97976 0.97726 0.93888 0.94121 0.91172 0.94289 0.77371 0.91708 0.86785 0.92132 0.88781 0.89203 0.85396 0.85525 0.87552 0.89051 0.86916 0.91195 0.86473 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.52 8.66 127.77 1.11 10.63 16 2 N -0.61 -32.59 2.84 -726.94 -2.07 -34.65 16 3 C -0.26 -15.96 9.65 84.03 0.81 -15.15 16 4 H 0.05 3.24 7.87 -2.91 -0.02 3.22 16 5 C -0.05 -3.01 5.09 84.86 0.43 -2.58 16 6 N -0.93 -57.93 10.76 21.65 0.23 -57.69 16 7 Si 0.96 48.64 29.58 68.60 2.03 50.67 16 8 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 C 0.12 5.15 5.34 86.38 0.46 5.61 16 12 C 0.10 3.53 3.48 30.59 0.11 3.63 16 13 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 14 O -0.56 -18.39 11.70 -148.98 -1.74 -20.14 16 15 C 0.09 2.69 5.11 86.38 0.44 3.13 16 16 N -0.61 -15.25 2.84 -846.79 -2.40 -17.65 16 17 C 0.08 1.09 9.89 127.77 1.26 2.35 16 18 C 0.49 14.51 6.55 87.66 0.57 15.08 16 19 O -0.59 -23.82 14.08 -3.02 -0.04 -23.87 16 20 C -0.12 -2.23 3.19 29.85 0.10 -2.13 16 21 C -0.12 -2.43 2.40 -10.07 -0.02 -2.46 16 22 H 0.07 1.97 7.82 -2.39 -0.02 1.96 16 23 C -0.11 -1.03 6.36 31.67 0.20 -0.83 16 24 C -0.12 -1.05 6.91 31.89 0.22 -0.83 16 25 C -0.16 -2.11 6.41 31.71 0.20 -1.90 16 26 C 0.27 6.41 1.79 31.36 0.06 6.47 16 27 F -0.22 -7.28 16.74 44.97 0.75 -6.53 16 28 F -0.21 -5.82 14.04 44.97 0.63 -5.19 16 29 H 0.00 0.11 7.33 -2.39 -0.02 0.09 16 30 H 0.00 0.22 7.37 -2.39 -0.02 0.21 16 31 H 0.04 1.78 7.00 -2.39 -0.02 1.77 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 33 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 34 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 35 H 0.38 8.95 8.79 -74.06 -0.65 8.30 16 36 H 0.06 2.19 7.42 -2.39 -0.02 2.17 16 37 H 0.11 2.31 7.89 -2.39 -0.02 2.29 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 0.81 6.44 -2.39 -0.02 0.79 16 40 H 0.09 0.94 7.89 -2.38 -0.02 0.92 16 41 H 0.13 1.55 6.92 -2.39 -0.02 1.53 16 42 H 0.13 1.66 8.11 -2.38 -0.02 1.64 16 43 H 0.11 0.46 7.85 -2.39 -0.02 0.44 16 44 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.12 1.08 8.12 -2.39 -0.02 1.06 16 48 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -86.72 384.80 3.64 -83.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.31 Total: 10.95 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 5.95 Total: 21.02 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.24 Total: -110.00 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.79 Total: -44.00 kcal Atomic # 9 Polarization: -13.10 SS G_CDS: 1.38 Total: -11.72 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -86.72 3.64 -83.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725721387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.375 kcal (2) G-P(sol) polarization free energy of solvation -86.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds