Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 N 1.46501 * 109.47174 * 240.00267 * 2 1 3 5 5 C 1.34778 * 120.00159 * 84.99822 * 4 2 1 6 6 O 1.21280 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00245 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47385 * 179.97438 * 7 5 4 9 9 O 1.42901 * 109.47267 * 179.97438 * 8 7 5 10 10 C 1.42898 * 113.99943 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46859 * 180.02562 * 10 9 8 12 12 F 1.39896 * 109.47177 * 299.99517 * 11 10 9 13 13 F 1.39891 * 109.47250 * 59.99836 * 11 10 9 14 14 C 1.53000 * 109.47530 * 119.99897 * 2 1 3 15 15 H 1.09002 * 109.49463 * 59.94117 * 14 2 1 16 16 C 1.53042 * 109.49466 * 299.83995 * 14 2 1 17 17 C 1.53040 * 109.53399 * 178.68321 * 16 14 2 18 18 C 1.52757 * 109.38837 * 61.23930 * 17 16 14 19 19 N 1.46933 * 109.00863 * 305.59166 * 18 17 16 20 20 C 1.36935 * 120.62781 * 233.58305 * 19 18 17 21 21 H 1.07995 * 119.99873 * 152.09995 * 20 19 18 22 22 C 1.38811 * 119.99806 * 332.09376 * 20 19 18 23 23 N 1.31615 * 120.00651 * 335.28172 * 22 20 19 24 24 Si 1.86803 * 119.99607 * 155.00135 * 22 20 19 25 25 H 1.48496 * 109.47436 * 60.00138 * 24 22 20 26 26 H 1.48503 * 109.47168 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47355 * 300.00110 * 24 22 20 28 28 C 1.46923 * 118.73785 * 53.30252 * 19 18 17 29 29 H 1.08994 * 109.47288 * 60.00314 * 1 2 3 30 30 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47311 * 299.99306 * 1 2 3 32 32 H 0.96998 * 119.99853 * 264.99643 * 4 2 1 33 33 H 1.09005 * 109.46949 * 300.00004 * 7 5 4 34 34 H 1.09007 * 109.46731 * 59.99353 * 7 5 4 35 35 H 1.08996 * 109.47156 * 299.99907 * 8 7 5 36 36 H 1.09006 * 109.46674 * 60.00197 * 8 7 5 37 37 H 1.09006 * 109.47067 * 299.99693 * 10 9 8 38 38 H 1.09000 * 109.47678 * 60.00133 * 10 9 8 39 39 H 1.09001 * 109.46995 * 179.97438 * 11 10 9 40 40 H 1.08990 * 109.46013 * 298.70087 * 16 14 2 41 41 H 1.09000 * 109.45871 * 58.66279 * 16 14 2 42 42 H 1.09003 * 109.50007 * 181.32125 * 17 16 14 43 43 H 1.09008 * 109.49676 * 301.38120 * 17 16 14 44 44 H 1.08994 * 109.51278 * 185.70471 * 18 17 16 45 45 H 1.09000 * 109.43033 * 65.42089 * 18 17 16 46 46 H 0.97009 * 119.99439 * 353.96783 * 23 22 20 47 47 H 1.09006 * 109.58528 * 66.43409 * 28 19 18 48 48 H 1.09002 * 109.58420 * 186.71480 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1584 -2.4118 7 6 2.6488 -0.7287 -3.5878 8 6 2.6998 0.2543 -4.7591 9 8 3.1762 -0.4193 -5.9259 10 6 3.2627 0.4141 -7.0835 11 6 3.7805 -0.4075 -8.2658 12 9 5.0479 -0.9155 -7.9612 13 9 2.9019 -1.4665 -8.5181 14 6 2.0401 -0.7212 1.2492 15 1 1.6761 -1.7487 1.2502 16 6 1.5336 0.0022 2.4992 17 6 2.0160 -0.7374 3.7492 18 6 3.5433 -0.7416 3.7781 19 7 4.0443 -1.3003 2.5149 20 6 4.9302 -2.3445 2.5166 21 1 4.9568 -3.0315 1.6838 22 6 5.7941 -2.5200 3.5889 23 7 6.1264 -1.4925 4.3414 24 14 6.4788 -4.2159 3.9688 25 1 7.2513 -4.7108 2.8011 26 1 7.3696 -4.1360 5.1543 27 1 5.3595 -5.1494 4.2534 28 6 3.5720 -0.7215 1.2498 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 3.6480 -1.1212 -3.3987 34 1 1.9759 -1.5505 -3.8326 35 1 1.7005 0.6464 -4.9481 36 1 3.3725 1.0764 -4.5145 37 1 2.2751 0.8096 -7.3211 38 1 3.9469 1.2395 -6.8868 39 1 3.8461 0.2280 -9.1489 40 1 1.9182 1.0219 2.5095 41 1 0.4439 0.0253 2.4888 42 1 1.6355 -0.2352 4.6386 43 1 1.6518 -1.7646 3.7275 44 1 3.8900 -1.3530 4.6111 45 1 3.9066 0.2794 3.8955 46 1 5.8390 -0.5989 4.0964 47 1 3.9376 0.3012 1.1568 48 1 3.9397 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731555290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = -185.615878 kcal Electronic energy + Delta-G solvation = -29230.014453 eV Core-core repulsion = 24762.541286 eV Total energy + Delta-G solvation = -4467.473167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.23212 -47.26904 -40.07475 -38.49008 -37.93122 -35.46666 -33.26989 -32.47756 -30.97129 -30.51623 -29.65694 -28.43962 -25.26475 -24.44980 -23.32933 -22.97025 -22.12086 -20.54538 -20.38237 -19.12888 -18.28898 -17.83237 -17.47210 -17.20413 -16.91464 -16.46731 -15.98073 -15.82046 -15.11617 -14.58566 -14.37237 -14.12396 -14.10154 -13.78806 -13.66540 -13.62636 -13.59691 -13.42900 -13.28495 -12.87145 -12.77607 -12.58489 -12.34775 -11.93707 -11.74695 -11.67168 -11.57295 -11.32430 -11.15076 -10.93457 -10.68188 -10.35794 -10.25353 -10.12123 -10.05691 -10.05244 -9.88785 -9.70487 -9.29146 -8.99287 -8.37585 -6.89447 -6.07540 -3.24496 2.59498 2.67428 3.31193 3.48625 3.51637 3.57834 3.69753 3.79301 4.07246 4.48841 4.54676 4.58683 4.75887 4.77579 4.85329 4.99058 5.00783 5.17063 5.23539 5.30096 5.31063 5.44952 5.48206 5.49957 5.56010 5.66400 5.69603 5.91640 5.95552 6.02343 6.17651 6.19128 6.31058 6.44940 6.47584 6.53846 6.59557 6.68670 6.70675 6.81692 7.09919 7.20377 7.50877 7.97587 8.19075 8.56567 9.10753 9.83560 10.28600 11.20577 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.002381 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.904956 B =11756.958666 C =13589.005169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.085 0.915 4 N -0.717 5.717 5 C 0.520 3.480 6 O -0.549 6.549 7 C -0.142 4.142 8 C 0.080 3.920 9 O -0.380 6.380 10 C 0.011 3.989 11 C 0.271 3.729 12 F -0.199 7.199 13 F -0.200 7.200 14 C -0.111 4.111 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.598 5.598 20 C -0.350 4.350 21 H 0.055 0.945 22 C -0.024 4.024 23 N -0.915 5.915 24 Si 1.064 2.936 25 H -0.293 1.293 26 H -0.285 1.285 27 H -0.294 1.294 28 C 0.158 3.842 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.403 0.597 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.015 0.985 46 H 0.269 0.731 47 H 0.014 0.986 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 4.301 -20.368 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.306 3.694 6 O -0.428 6.428 7 C -0.182 4.182 8 C 0.003 3.997 9 O -0.299 6.299 10 C -0.067 4.067 11 C 0.217 3.783 12 F -0.180 7.180 13 F -0.182 7.182 14 C -0.132 4.132 15 H 0.091 0.909 16 C -0.139 4.139 17 C -0.176 4.176 18 C 0.022 3.978 19 N -0.322 5.322 20 C -0.479 4.479 21 H 0.073 0.927 22 C -0.226 4.226 23 N -0.555 5.555 24 Si 0.893 3.107 25 H -0.220 1.220 26 H -0.211 1.211 27 H -0.221 1.221 28 C 0.031 3.969 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.033 0.967 46 H 0.080 0.920 47 H 0.032 0.968 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.738 4.024 -19.306 21.994 hybrid contribution -0.884 0.540 -1.114 1.521 sum -10.622 4.564 -20.420 23.465 Atomic orbital electron populations 1.22197 0.95626 1.01926 1.02170 1.21049 0.93524 0.97482 0.83661 0.89651 1.46081 1.66703 1.14360 1.09573 1.20273 0.77448 0.87140 0.84507 1.90692 1.50753 1.16024 1.85287 1.21479 1.04824 0.99827 0.92106 1.22188 0.99449 0.94370 0.83668 1.87894 1.87422 1.36564 1.18005 1.23649 1.02634 0.94029 0.86378 1.22030 0.73728 0.84544 0.97973 1.93023 1.41190 1.89078 1.94729 1.93010 1.69208 1.60681 1.95272 1.21961 0.99401 0.99301 0.92515 0.90919 1.21442 0.99012 0.98937 0.94555 1.21986 0.99721 0.99785 0.96068 1.20878 0.89734 0.96631 0.90516 1.44094 1.50138 1.38700 0.99251 1.19941 1.14614 1.03994 1.09368 0.92723 1.25837 0.95139 1.04741 0.96894 1.70777 1.42650 0.99617 1.42473 0.83545 0.75997 0.74956 0.76166 1.21980 1.21099 1.22086 1.20846 0.89947 0.96102 0.89964 0.92639 0.92621 0.91306 0.76228 0.87623 0.87940 0.92095 0.91929 0.90113 0.89999 0.85876 0.92593 0.92815 0.92967 0.92420 0.90337 0.96706 0.92006 0.96812 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.14 37.16 0.34 -1.60 16 2 C 0.15 2.04 2.16 -67.93 -0.15 1.90 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -8.97 4.48 -53.81 -0.24 -9.21 16 5 C 0.52 6.70 7.79 -10.98 -0.09 6.62 16 6 O -0.55 -8.81 15.65 5.56 0.09 -8.72 16 7 C -0.14 -1.44 6.07 -27.89 -0.17 -1.61 16 8 C 0.08 0.80 5.23 37.16 0.19 1.00 16 9 O -0.38 -3.96 10.23 -35.23 -0.36 -4.33 16 10 C 0.01 0.07 6.16 37.16 0.23 0.30 16 11 C 0.27 1.83 5.63 37.16 0.21 2.04 16 12 F -0.20 -1.98 17.28 2.25 0.04 -1.94 16 13 F -0.20 -1.91 17.28 2.25 0.04 -1.87 16 14 C -0.11 -1.78 1.97 -90.50 -0.18 -1.95 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.60 4.86 -26.69 -0.13 -1.73 16 17 C -0.14 -2.49 6.06 -26.84 -0.16 -2.65 16 18 C 0.15 3.42 4.66 -3.93 -0.02 3.40 16 19 N -0.60 -14.64 2.86 -172.58 -0.49 -15.14 16 20 C -0.35 -9.59 9.49 -15.06 -0.14 -9.74 16 21 H 0.05 1.49 7.94 -52.49 -0.42 1.08 16 22 C -0.02 -0.67 4.69 -17.43 -0.08 -0.76 16 23 N -0.92 -27.30 12.40 55.49 0.69 -26.61 16 24 Si 1.06 25.00 29.99 -169.99 -5.10 19.90 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.16 3.19 5.55 -3.71 -0.02 3.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.40 4.45 8.42 -40.82 -0.34 4.11 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.08 2.04 6.30 -51.93 -0.33 1.72 16 45 H 0.01 0.35 7.87 -51.93 -0.41 -0.05 16 46 H 0.27 8.11 6.71 -40.82 -0.27 7.84 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 1.06 7.44 -51.93 -0.39 0.67 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -33.86 389.88 -7.55 -41.41 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.92 Total: 2.25 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.16 Total: -1.61 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.05 Total: -50.96 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.27 Total: -13.04 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.86 -7.55 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.204 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds