Wall clock time and date at job start Tue Mar 31 2020 17:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 N 1.46501 * 109.47174 * 240.00267 * 2 1 3 5 5 C 1.34778 * 120.00159 * 84.99822 * 4 2 1 6 6 O 1.21280 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00245 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47385 * 179.97438 * 7 5 4 9 9 O 1.42901 * 109.47267 * 179.97438 * 8 7 5 10 10 C 1.42898 * 113.99943 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46859 * 180.02562 * 10 9 8 12 12 F 1.39896 * 109.47177 * 299.99517 * 11 10 9 13 13 F 1.39891 * 109.47250 * 59.99836 * 11 10 9 14 14 C 1.53000 * 109.47530 * 119.99897 * 2 1 3 15 15 H 1.09002 * 109.49463 * 59.94117 * 14 2 1 16 16 C 1.53042 * 109.49466 * 299.83995 * 14 2 1 17 17 C 1.53040 * 109.53399 * 178.68321 * 16 14 2 18 18 C 1.52757 * 109.38837 * 61.23930 * 17 16 14 19 19 N 1.46933 * 109.00863 * 305.59166 * 18 17 16 20 20 C 1.36935 * 120.62781 * 233.58305 * 19 18 17 21 21 H 1.07995 * 119.99873 * 152.09995 * 20 19 18 22 22 C 1.38811 * 119.99806 * 332.09376 * 20 19 18 23 23 N 1.31615 * 120.00651 * 335.28172 * 22 20 19 24 24 Si 1.86803 * 119.99607 * 155.00135 * 22 20 19 25 25 H 1.48496 * 109.47436 * 60.00138 * 24 22 20 26 26 H 1.48503 * 109.47168 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47355 * 300.00110 * 24 22 20 28 28 C 1.46923 * 118.73785 * 53.30252 * 19 18 17 29 29 H 1.08994 * 109.47288 * 60.00314 * 1 2 3 30 30 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47311 * 299.99306 * 1 2 3 32 32 H 0.96998 * 119.99853 * 264.99643 * 4 2 1 33 33 H 1.09005 * 109.46949 * 300.00004 * 7 5 4 34 34 H 1.09007 * 109.46731 * 59.99353 * 7 5 4 35 35 H 1.08996 * 109.47156 * 299.99907 * 8 7 5 36 36 H 1.09006 * 109.46674 * 60.00197 * 8 7 5 37 37 H 1.09006 * 109.47067 * 299.99693 * 10 9 8 38 38 H 1.09000 * 109.47678 * 60.00133 * 10 9 8 39 39 H 1.09001 * 109.46995 * 179.97438 * 11 10 9 40 40 H 1.08990 * 109.46013 * 298.70087 * 16 14 2 41 41 H 1.09000 * 109.45871 * 58.66279 * 16 14 2 42 42 H 1.09003 * 109.50007 * 181.32125 * 17 16 14 43 43 H 1.09008 * 109.49676 * 301.38120 * 17 16 14 44 44 H 1.08994 * 109.51278 * 185.70471 * 18 17 16 45 45 H 1.09000 * 109.43033 * 65.42089 * 18 17 16 46 46 H 0.97009 * 119.99439 * 353.96783 * 23 22 20 47 47 H 1.09006 * 109.58528 * 66.43409 * 28 19 18 48 48 H 1.09002 * 109.58420 * 186.71480 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1584 -2.4118 7 6 2.6488 -0.7287 -3.5878 8 6 2.6998 0.2543 -4.7591 9 8 3.1762 -0.4193 -5.9259 10 6 3.2627 0.4141 -7.0835 11 6 3.7805 -0.4075 -8.2658 12 9 5.0479 -0.9155 -7.9612 13 9 2.9019 -1.4665 -8.5181 14 6 2.0401 -0.7212 1.2492 15 1 1.6761 -1.7487 1.2502 16 6 1.5336 0.0022 2.4992 17 6 2.0160 -0.7374 3.7492 18 6 3.5433 -0.7416 3.7781 19 7 4.0443 -1.3003 2.5149 20 6 4.9302 -2.3445 2.5166 21 1 4.9568 -3.0315 1.6838 22 6 5.7941 -2.5200 3.5889 23 7 6.1264 -1.4925 4.3414 24 14 6.4788 -4.2159 3.9688 25 1 7.2513 -4.7108 2.8011 26 1 7.3696 -4.1360 5.1543 27 1 5.3595 -5.1494 4.2534 28 6 3.5720 -0.7215 1.2498 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 3.6480 -1.1212 -3.3987 34 1 1.9759 -1.5505 -3.8326 35 1 1.7005 0.6464 -4.9481 36 1 3.3725 1.0764 -4.5145 37 1 2.2751 0.8096 -7.3211 38 1 3.9469 1.2395 -6.8868 39 1 3.8461 0.2280 -9.1489 40 1 1.9182 1.0219 2.5095 41 1 0.4439 0.0253 2.4888 42 1 1.6355 -0.2352 4.6386 43 1 1.6518 -1.7646 3.7275 44 1 3.8900 -1.3530 4.6111 45 1 3.9066 0.2794 3.8955 46 1 5.8390 -0.5989 4.0964 47 1 3.9376 0.3012 1.1568 48 1 3.9397 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731555290.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:20 Heat of formation + Delta-G solvation = -207.645915 kcal Electronic energy + Delta-G solvation = -29230.969747 eV Core-core repulsion = 24762.541286 eV Total energy + Delta-G solvation = -4468.428461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.84652 -47.91018 -41.17256 -39.70793 -38.91649 -36.92010 -34.85166 -33.42453 -32.37349 -32.08983 -30.41488 -29.75087 -27.07751 -25.56120 -24.26477 -23.84673 -23.77211 -21.94468 -21.47866 -20.60176 -19.38337 -18.93556 -18.43842 -18.09084 -17.64732 -17.28006 -17.02660 -16.66164 -16.22580 -16.12484 -15.92019 -15.44904 -15.37754 -14.95789 -14.87905 -14.80459 -14.66375 -14.32279 -14.27868 -14.12400 -13.93722 -13.72765 -13.44840 -13.38405 -12.92555 -12.66223 -12.61095 -12.45324 -12.37873 -12.32790 -11.93872 -11.88842 -11.85629 -11.72400 -11.63727 -11.40836 -11.12292 -10.89550 -10.81221 -10.47039 -10.09111 -8.93712 -8.24345 -5.40583 1.57592 1.58469 1.65787 1.84293 1.88890 2.58849 2.65550 2.99200 3.20521 3.39098 3.44621 3.58502 3.68793 3.80888 3.90538 3.93991 3.99135 4.00224 4.21889 4.25613 4.32115 4.37066 4.40202 4.48635 4.50562 4.52329 4.64955 4.72704 4.74489 4.77990 4.79502 4.86086 4.95131 5.01801 5.12464 5.17288 5.22537 5.26397 5.39141 5.50240 5.57375 5.82900 5.93269 6.38173 6.50388 7.05434 7.18271 7.77764 8.22774 8.99733 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.002381 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.904956 B =11756.958666 C =13589.005169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.065 0.935 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.582 6.582 7 C -0.136 4.136 8 C 0.084 3.916 9 O -0.403 6.403 10 C 0.001 3.999 11 C 0.262 3.738 12 F -0.221 7.221 13 F -0.219 7.219 14 C -0.094 4.094 15 H 0.077 0.923 16 C -0.098 4.098 17 C -0.126 4.126 18 C 0.151 3.849 19 N -0.617 5.617 20 C -0.353 4.353 21 H 0.054 0.946 22 C -0.078 4.078 23 N -0.944 5.944 24 Si 1.114 2.886 25 H -0.276 1.276 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.157 3.843 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.412 0.588 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.176 0.824 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.042 0.958 45 H -0.003 1.003 46 H 0.252 0.748 47 H -0.004 1.004 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 3.635 -21.817 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.083 0.917 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.463 6.463 7 C -0.176 4.176 8 C 0.007 3.993 9 O -0.322 6.322 10 C -0.076 4.076 11 C 0.209 3.791 12 F -0.203 7.203 13 F -0.200 7.200 14 C -0.114 4.114 15 H 0.096 0.904 16 C -0.136 4.136 17 C -0.165 4.165 18 C 0.026 3.974 19 N -0.341 5.341 20 C -0.483 4.483 21 H 0.072 0.928 22 C -0.274 4.274 23 N -0.586 5.586 24 Si 0.939 3.061 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.204 1.204 28 C 0.032 3.968 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.192 0.808 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.014 0.986 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.653 3.349 -20.789 24.067 hybrid contribution -0.268 0.820 -0.728 1.129 sum -11.921 4.169 -21.517 24.950 Atomic orbital electron populations 1.22120 0.93466 1.02912 1.02545 1.20865 0.95011 0.96041 0.83088 0.91697 1.46063 1.66474 1.14751 1.09214 1.20699 0.76658 0.86732 0.85120 1.90677 1.52266 1.17528 1.85826 1.21454 1.05254 1.00052 0.90838 1.22094 0.99368 0.93985 0.83818 1.87854 1.87594 1.37899 1.18900 1.23971 1.04357 0.94127 0.85160 1.22706 0.72250 0.84246 0.99901 1.92974 1.42747 1.89482 1.95047 1.92967 1.69807 1.61855 1.95420 1.21734 0.95702 1.00006 0.93989 0.90437 1.21453 1.01195 0.98094 0.92860 1.21849 0.95546 1.00530 0.98537 1.20772 0.93178 0.94566 0.88903 1.44357 1.50149 1.38616 1.00982 1.20235 1.14475 1.04438 1.09113 0.92797 1.27206 0.95801 1.07193 0.97247 1.70904 1.44734 0.99356 1.43655 0.82864 0.75844 0.71317 0.76086 1.20134 1.22077 1.20389 1.20956 0.93083 0.94605 0.88179 0.93046 0.91261 0.90184 0.75221 0.87272 0.86010 0.91824 0.92780 0.87978 0.88484 0.80772 0.92989 0.89070 0.90742 0.92504 0.93929 0.98527 0.93810 0.98580 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.14 71.98 0.66 -2.56 16 2 C 0.16 4.04 2.16 44.99 0.10 4.13 16 3 H 0.06 2.00 7.58 -2.38 -0.02 1.98 16 4 N -0.71 -16.85 4.48 -442.53 -1.98 -18.83 16 5 C 0.52 12.88 7.79 87.66 0.68 13.56 16 6 O -0.58 -18.35 15.65 -3.03 -0.05 -18.40 16 7 C -0.14 -2.58 6.07 29.85 0.18 -2.40 16 8 C 0.08 1.61 5.23 71.98 0.38 1.99 16 9 O -0.40 -7.96 10.23 -148.98 -1.52 -9.48 16 10 C 0.00 0.01 6.16 71.98 0.44 0.45 16 11 C 0.26 3.07 5.63 71.98 0.41 3.47 16 12 F -0.22 -4.22 17.28 44.97 0.78 -3.44 16 13 F -0.22 -3.93 17.28 44.97 0.78 -3.15 16 14 C -0.09 -2.84 1.97 -10.72 -0.02 -2.87 16 15 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 16 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 17 C -0.13 -4.42 6.06 30.53 0.19 -4.23 16 18 C 0.15 7.15 4.66 86.22 0.40 7.55 16 19 N -0.62 -30.65 2.86 -699.93 -2.00 -32.65 16 20 C -0.35 -19.56 9.49 84.03 0.80 -18.76 16 21 H 0.05 2.94 7.94 -2.91 -0.02 2.92 16 22 C -0.08 -4.47 4.69 84.86 0.40 -4.07 16 23 N -0.94 -58.21 12.40 21.65 0.27 -57.94 16 24 Si 1.11 50.74 29.99 68.60 2.06 52.80 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 28 C 0.16 6.37 5.55 86.36 0.48 6.85 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 1.51 6.40 -2.39 -0.02 1.50 16 32 H 0.41 8.35 8.42 -92.71 -0.78 7.57 16 33 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.05 1.10 8.10 -2.38 -0.02 1.09 16 37 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.18 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 2.07 6.36 -2.39 -0.02 2.06 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.04 2.29 6.30 -2.39 -0.02 2.28 16 45 H 0.00 -0.16 7.87 -2.39 -0.02 -0.18 16 46 H 0.25 15.94 6.71 -92.70 -0.62 15.32 16 47 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 48 H 0.05 2.07 7.44 -2.39 -0.02 2.05 16 Total: -1.00 -76.04 389.88 3.88 -72.16 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.32 Total: 18.54 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.23 Total: 0.39 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -3.71 Total: -109.42 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.57 Total: -27.88 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 1.55 Total: -6.60 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.06 Total: 52.80 kcal Total: -76.04 3.88 -72.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555290.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.489 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds