Wall clock time and date at job start Tue Mar 31 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46757 * 2 1 4 4 N 1.46503 * 109.47112 * 240.00337 * 2 1 3 5 5 C 1.34773 * 120.00024 * 84.99744 * 4 2 1 6 6 O 1.21282 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00032 * 180.02562 * 5 4 2 8 8 C 1.53007 * 109.47467 * 179.97438 * 7 5 4 9 9 O 1.42898 * 109.47335 * 180.02562 * 8 7 5 10 10 C 1.42894 * 113.99845 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47360 * 179.97438 * 10 9 8 12 12 F 1.39898 * 109.46841 * 300.00090 * 11 10 9 13 13 F 1.39908 * 109.46768 * 59.99531 * 11 10 9 14 14 C 1.52998 * 109.47467 * 120.00275 * 2 1 3 15 15 H 1.08994 * 109.49650 * 180.02562 * 14 2 1 16 16 C 1.53042 * 109.49796 * 300.06579 * 14 2 1 17 17 C 1.53037 * 109.54335 * 181.31672 * 16 14 2 18 18 C 1.53189 * 109.30834 * 298.63787 * 17 16 14 19 19 N 1.46925 * 108.78320 * 54.63253 * 18 17 16 20 20 C 1.36932 * 120.63533 * 126.38542 * 19 18 17 21 21 H 1.07999 * 120.00256 * 332.53861 * 20 19 18 22 22 C 1.38818 * 119.99868 * 152.53492 * 20 19 18 23 23 N 1.31620 * 119.99464 * 159.35394 * 22 20 19 24 24 Si 1.86793 * 120.00128 * 339.35643 * 22 20 19 25 25 H 1.48504 * 109.47105 * 92.97162 * 24 22 20 26 26 H 1.48496 * 109.47200 * 212.97237 * 24 22 20 27 27 H 1.48504 * 109.47190 * 332.97319 * 24 22 20 28 28 C 1.46940 * 118.76295 * 306.41412 * 19 18 17 29 29 H 1.08994 * 109.47609 * 59.99788 * 1 2 3 30 30 H 1.08999 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46868 * 299.99499 * 1 2 3 32 32 H 0.97001 * 119.99905 * 265.00051 * 4 2 1 33 33 H 1.09001 * 109.47252 * 59.99690 * 7 5 4 34 34 H 1.08998 * 109.47030 * 299.99999 * 7 5 4 35 35 H 1.09001 * 109.46602 * 59.99521 * 8 7 5 36 36 H 1.09008 * 109.46888 * 300.00142 * 8 7 5 37 37 H 1.09006 * 109.47234 * 299.99401 * 10 9 8 38 38 H 1.09000 * 109.47761 * 59.99752 * 10 9 8 39 39 H 1.08995 * 109.47506 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.45790 * 301.33831 * 16 14 2 41 41 H 1.09002 * 109.46034 * 61.30684 * 16 14 2 42 42 H 1.09004 * 109.49327 * 58.57876 * 17 16 14 43 43 H 1.08989 * 109.50142 * 178.65032 * 17 16 14 44 44 H 1.09003 * 109.58555 * 174.41830 * 18 17 16 45 45 H 1.09001 * 109.58807 * 294.70039 * 18 17 16 46 46 H 0.97000 * 119.99630 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.55597 * 293.78869 * 28 19 18 48 48 H 1.08997 * 109.61751 * 173.35302 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1585 -2.4117 7 6 2.6488 -0.7286 -3.5878 8 6 2.6997 0.2544 -4.7592 9 8 3.1750 -0.4195 -5.9262 10 6 3.2614 0.4139 -7.0838 11 6 3.7792 -0.4077 -8.2662 12 9 5.0466 -0.9157 -7.9616 13 9 2.9005 -1.4668 -8.5185 14 6 2.0401 -0.7213 1.2492 15 1 3.1300 -0.7211 1.2497 16 6 1.5290 -0.0013 2.4992 17 6 2.0655 -0.7026 3.7492 18 6 1.5535 -2.1461 3.7793 19 7 1.9163 -2.8031 2.5162 20 6 2.6036 -3.9875 2.5180 21 1 3.2562 -4.2319 3.3431 22 6 2.4615 -4.8740 1.4593 23 7 3.3819 -5.7887 1.2389 24 14 0.9641 -4.7688 0.3475 25 1 1.2754 -3.9081 -0.8220 26 1 0.5999 -6.1296 -0.1224 27 1 -0.1733 -4.1850 1.1030 28 6 1.5285 -2.1653 1.2505 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2490 -1.6317 -1.1527 33 1 1.9759 -1.5505 -3.8326 34 1 3.6479 -1.1212 -3.3987 35 1 3.3724 1.0765 -4.5145 36 1 1.7003 0.6466 -4.9481 37 1 2.2739 0.8100 -7.3209 38 1 3.9463 1.2388 -6.8875 39 1 3.8447 0.2279 -9.1493 40 1 1.8717 1.0334 2.4880 41 1 0.4392 -0.0228 2.5106 42 1 3.1553 -0.7035 3.7262 43 1 1.7207 -0.1752 4.6385 44 1 2.0113 -2.6788 4.6128 45 1 0.4698 -2.1471 3.8959 46 1 3.2828 -6.4079 0.4989 47 1 0.4424 -2.1682 1.1583 48 1 1.9697 -2.7100 0.4159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731555291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:25 Heat of formation + Delta-G solvation = -174.822024 kcal Electronic energy + Delta-G solvation = -29754.165414 eV Core-core repulsion = 25287.160304 eV Total energy + Delta-G solvation = -4467.005110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.17971 -47.21793 -40.07703 -38.58018 -37.99227 -35.30216 -33.19461 -32.48322 -31.35984 -30.64818 -29.67863 -28.43063 -25.36356 -24.79574 -23.55978 -23.24929 -22.40902 -20.52491 -20.11616 -19.01394 -18.25496 -17.78265 -17.34554 -16.93050 -16.70499 -16.41924 -16.02943 -15.78107 -15.29508 -15.04343 -14.46230 -14.09689 -14.09133 -14.04275 -13.72728 -13.61373 -13.57718 -13.40257 -13.25441 -12.94131 -12.72545 -12.54592 -12.18628 -12.17058 -11.82219 -11.66521 -11.60095 -11.44112 -11.27581 -11.05101 -10.77312 -10.58925 -10.50961 -10.15074 -10.06720 -9.91753 -9.77474 -9.71129 -9.50522 -8.95835 -8.66708 -7.00861 -6.00235 -3.35763 2.64600 2.73090 3.17616 3.37045 3.42949 3.44451 3.63743 3.83532 4.11374 4.45023 4.54077 4.63425 4.77298 4.81284 4.82780 5.02590 5.03380 5.10133 5.18795 5.22658 5.29984 5.38809 5.49695 5.53986 5.58923 5.62494 5.65931 5.80557 5.95145 6.01702 6.03952 6.13874 6.25168 6.31189 6.38271 6.50670 6.54732 6.60441 6.65392 6.67503 6.71580 6.94770 7.57748 7.91263 8.23905 8.28302 8.89244 9.66425 10.05015 11.15793 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.002795 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.178116 B =10014.543995 C =11403.057193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.085 0.915 4 N -0.720 5.720 5 C 0.521 3.479 6 O -0.552 6.552 7 C -0.146 4.146 8 C 0.081 3.919 9 O -0.379 6.379 10 C 0.011 3.989 11 C 0.271 3.729 12 F -0.199 7.199 13 F -0.200 7.200 14 C -0.115 4.115 15 H 0.079 0.921 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.147 3.853 19 N -0.605 5.605 20 C -0.259 4.259 21 H 0.086 0.914 22 C 0.022 3.978 23 N -0.906 5.906 24 Si 0.881 3.119 25 H -0.291 1.291 26 H -0.302 1.302 27 H -0.271 1.271 28 C 0.132 3.868 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.031 0.969 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 15.445 -13.410 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.372 5.372 5 C 0.308 3.692 6 O -0.431 6.431 7 C -0.185 4.185 8 C 0.005 3.995 9 O -0.298 6.298 10 C -0.067 4.067 11 C 0.217 3.783 12 F -0.180 7.180 13 F -0.181 7.181 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.140 4.140 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.328 5.328 20 C -0.387 4.387 21 H 0.103 0.897 22 C -0.177 4.177 23 N -0.549 5.549 24 Si 0.712 3.288 25 H -0.219 1.219 26 H -0.231 1.231 27 H -0.196 1.196 28 C 0.006 3.994 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.242 0.758 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.466 15.862 -13.490 20.968 hybrid contribution -0.720 -0.450 -0.702 1.102 sum -3.186 15.411 -14.192 21.191 Atomic orbital electron populations 1.22281 0.95583 1.02519 1.02104 1.21033 0.94072 0.96865 0.83714 0.89662 1.46269 1.66493 1.14768 1.09656 1.20272 0.77392 0.87071 0.84514 1.90672 1.51063 1.16003 1.85338 1.21505 1.04983 0.99952 0.92107 1.22179 0.99425 0.94245 0.83658 1.87912 1.87430 1.36505 1.17953 1.23645 1.02599 0.94000 0.86451 1.22029 0.73742 0.84575 0.97934 1.93021 1.41200 1.89092 1.94732 1.93021 1.69182 1.60637 1.95264 1.21980 1.01410 0.97472 0.92675 0.90267 1.21442 1.00358 0.97913 0.94320 1.21997 1.01143 0.97895 0.96408 1.20948 0.96569 0.91168 0.89213 1.44327 1.66085 1.23062 0.99360 1.18949 1.18769 0.92857 1.08138 0.89653 1.25295 0.97779 0.96295 0.98292 1.69833 1.32748 1.21423 1.30919 0.87004 0.85864 0.75761 0.80181 1.21888 1.23053 1.19623 1.21442 0.97043 0.90764 0.90180 0.92609 0.92008 0.91237 0.75753 0.87799 0.87580 0.91983 0.92076 0.90115 0.90076 0.85908 0.92842 0.92036 0.91981 0.92600 0.91957 0.96022 0.92708 0.95112 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.79 37.16 0.33 -2.03 16 2 C 0.15 2.21 2.41 -67.93 -0.16 2.05 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.72 -10.83 5.00 -53.81 -0.27 -11.10 16 5 C 0.52 7.54 7.79 -10.99 -0.09 7.45 16 6 O -0.55 -9.17 15.65 5.56 0.09 -9.09 16 7 C -0.15 -1.75 6.07 -27.88 -0.17 -1.92 16 8 C 0.08 0.90 5.23 37.16 0.19 1.10 16 9 O -0.38 -4.36 10.23 -35.23 -0.36 -4.72 16 10 C 0.01 0.08 6.16 37.16 0.23 0.31 16 11 C 0.27 2.02 5.63 37.16 0.21 2.23 16 12 F -0.20 -2.11 17.28 2.25 0.04 -2.07 16 13 F -0.20 -2.11 17.28 2.25 0.04 -2.07 16 14 C -0.11 -1.89 2.33 -90.50 -0.21 -2.10 16 15 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.10 -1.49 4.77 -26.69 -0.13 -1.62 16 17 C -0.14 -2.10 6.08 -26.61 -0.16 -2.26 16 18 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 19 N -0.61 -13.76 2.77 -172.31 -0.48 -14.23 16 20 C -0.26 -7.01 10.03 -15.06 -0.15 -7.16 16 21 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 23 N -0.91 -27.06 13.97 55.49 0.78 -26.29 16 24 Si 0.88 21.49 24.35 -169.99 -4.14 17.36 16 25 H -0.29 -6.50 6.62 56.52 0.37 -6.13 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.27 -6.57 6.64 56.52 0.38 -6.20 16 28 C 0.13 2.65 2.98 -3.70 -0.01 2.64 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 31 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 32 H 0.41 6.33 6.97 -40.82 -0.28 6.05 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.66 8.10 -51.92 -0.42 0.24 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.86 6.50 -51.93 -0.34 0.52 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.73 8.14 -51.94 -0.42 0.31 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.03 0.63 5.11 -51.93 -0.27 0.36 16 48 H 0.07 1.46 3.10 -51.93 -0.16 1.29 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -32.89 379.00 -6.45 -39.35 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.62 Total: 5.18 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.24 Total: 1.98 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.03 Total: -51.62 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.27 Total: -13.80 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.89 -6.45 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.476 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds