Wall clock time and date at job start Tue Mar 31 2020 17:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46757 * 2 1 4 4 N 1.46503 * 109.47112 * 240.00337 * 2 1 3 5 5 C 1.34773 * 120.00024 * 84.99744 * 4 2 1 6 6 O 1.21282 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00032 * 180.02562 * 5 4 2 8 8 C 1.53007 * 109.47467 * 179.97438 * 7 5 4 9 9 O 1.42898 * 109.47335 * 180.02562 * 8 7 5 10 10 C 1.42894 * 113.99845 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47360 * 179.97438 * 10 9 8 12 12 F 1.39898 * 109.46841 * 300.00090 * 11 10 9 13 13 F 1.39908 * 109.46768 * 59.99531 * 11 10 9 14 14 C 1.52998 * 109.47467 * 120.00275 * 2 1 3 15 15 H 1.08994 * 109.49650 * 180.02562 * 14 2 1 16 16 C 1.53042 * 109.49796 * 300.06579 * 14 2 1 17 17 C 1.53037 * 109.54335 * 181.31672 * 16 14 2 18 18 C 1.53189 * 109.30834 * 298.63787 * 17 16 14 19 19 N 1.46925 * 108.78320 * 54.63253 * 18 17 16 20 20 C 1.36932 * 120.63533 * 126.38542 * 19 18 17 21 21 H 1.07999 * 120.00256 * 332.53861 * 20 19 18 22 22 C 1.38818 * 119.99868 * 152.53492 * 20 19 18 23 23 N 1.31620 * 119.99464 * 159.35394 * 22 20 19 24 24 Si 1.86793 * 120.00128 * 339.35643 * 22 20 19 25 25 H 1.48504 * 109.47105 * 92.97162 * 24 22 20 26 26 H 1.48496 * 109.47200 * 212.97237 * 24 22 20 27 27 H 1.48504 * 109.47190 * 332.97319 * 24 22 20 28 28 C 1.46940 * 118.76295 * 306.41412 * 19 18 17 29 29 H 1.08994 * 109.47609 * 59.99788 * 1 2 3 30 30 H 1.08999 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46868 * 299.99499 * 1 2 3 32 32 H 0.97001 * 119.99905 * 265.00051 * 4 2 1 33 33 H 1.09001 * 109.47252 * 59.99690 * 7 5 4 34 34 H 1.08998 * 109.47030 * 299.99999 * 7 5 4 35 35 H 1.09001 * 109.46602 * 59.99521 * 8 7 5 36 36 H 1.09008 * 109.46888 * 300.00142 * 8 7 5 37 37 H 1.09006 * 109.47234 * 299.99401 * 10 9 8 38 38 H 1.09000 * 109.47761 * 59.99752 * 10 9 8 39 39 H 1.08995 * 109.47506 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.45790 * 301.33831 * 16 14 2 41 41 H 1.09002 * 109.46034 * 61.30684 * 16 14 2 42 42 H 1.09004 * 109.49327 * 58.57876 * 17 16 14 43 43 H 1.08989 * 109.50142 * 178.65032 * 17 16 14 44 44 H 1.09003 * 109.58555 * 174.41830 * 18 17 16 45 45 H 1.09001 * 109.58807 * 294.70039 * 18 17 16 46 46 H 0.97000 * 119.99630 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.55597 * 293.78869 * 28 19 18 48 48 H 1.08997 * 109.61751 * 173.35302 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1585 -2.4117 7 6 2.6488 -0.7286 -3.5878 8 6 2.6997 0.2544 -4.7592 9 8 3.1750 -0.4195 -5.9262 10 6 3.2614 0.4139 -7.0838 11 6 3.7792 -0.4077 -8.2662 12 9 5.0466 -0.9157 -7.9616 13 9 2.9005 -1.4668 -8.5185 14 6 2.0401 -0.7213 1.2492 15 1 3.1300 -0.7211 1.2497 16 6 1.5290 -0.0013 2.4992 17 6 2.0655 -0.7026 3.7492 18 6 1.5535 -2.1461 3.7793 19 7 1.9163 -2.8031 2.5162 20 6 2.6036 -3.9875 2.5180 21 1 3.2562 -4.2319 3.3431 22 6 2.4615 -4.8740 1.4593 23 7 3.3819 -5.7887 1.2389 24 14 0.9641 -4.7688 0.3475 25 1 1.2754 -3.9081 -0.8220 26 1 0.5999 -6.1296 -0.1224 27 1 -0.1733 -4.1850 1.1030 28 6 1.5285 -2.1653 1.2505 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2490 -1.6317 -1.1527 33 1 1.9759 -1.5505 -3.8326 34 1 3.6479 -1.1212 -3.3987 35 1 3.3724 1.0765 -4.5145 36 1 1.7003 0.6466 -4.9481 37 1 2.2739 0.8100 -7.3209 38 1 3.9463 1.2388 -6.8875 39 1 3.8447 0.2279 -9.1493 40 1 1.8717 1.0334 2.4880 41 1 0.4392 -0.0228 2.5106 42 1 3.1553 -0.7035 3.7262 43 1 1.7207 -0.1752 4.6385 44 1 2.0113 -2.6788 4.6128 45 1 0.4698 -2.1471 3.8959 46 1 3.2828 -6.4079 0.4989 47 1 0.4424 -2.1682 1.1583 48 1 1.9697 -2.7100 0.4159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731555291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:24 Heat of formation + Delta-G solvation = -197.516815 kcal Electronic energy + Delta-G solvation = -29755.149534 eV Core-core repulsion = 25287.160304 eV Total energy + Delta-G solvation = -4467.989230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.84913 -47.91608 -41.26452 -39.81603 -38.92592 -36.70549 -34.85395 -33.56962 -32.78363 -32.14761 -30.45434 -29.65787 -27.16586 -25.92163 -24.76766 -23.93462 -23.82605 -21.91750 -21.27413 -20.44650 -19.00570 -18.73965 -18.44298 -18.13969 -17.65944 -17.44744 -17.23144 -16.79174 -16.59465 -16.14954 -15.93623 -15.59552 -15.17326 -15.03701 -14.91255 -14.84404 -14.65514 -14.55298 -14.29881 -14.13748 -13.97600 -13.66502 -13.57638 -13.39936 -13.27921 -12.83692 -12.60466 -12.50426 -12.49123 -12.39219 -12.08044 -11.96717 -11.85881 -11.60813 -11.53088 -11.29895 -11.23070 -10.94942 -10.81518 -10.63721 -10.14895 -8.89016 -8.15742 -5.47087 1.23750 1.41978 1.49707 1.51734 1.86950 2.40025 2.57017 2.98879 3.05062 3.33237 3.38715 3.58279 3.64378 3.80051 3.87103 3.91754 3.96043 3.98831 4.23125 4.26587 4.31828 4.33987 4.36647 4.44265 4.50252 4.52058 4.57000 4.69269 4.70160 4.74432 4.78960 4.88395 4.97281 5.01340 5.10692 5.15391 5.23960 5.27683 5.38246 5.48244 5.61093 5.88114 5.93675 6.13859 6.40101 6.93525 7.08587 7.63981 8.04469 9.04231 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.002795 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.178116 B =10014.543995 C =11403.057193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.090 0.910 4 N -0.725 5.725 5 C 0.524 3.476 6 O -0.572 6.572 7 C -0.144 4.144 8 C 0.088 3.912 9 O -0.406 6.406 10 C 0.001 3.999 11 C 0.260 3.740 12 F -0.221 7.221 13 F -0.221 7.221 14 C -0.103 4.103 15 H 0.062 0.938 16 C -0.100 4.100 17 C -0.126 4.126 18 C 0.138 3.862 19 N -0.621 5.621 20 C -0.249 4.249 21 H 0.049 0.951 22 C -0.034 4.034 23 N -0.956 5.956 24 Si 0.941 3.059 25 H -0.261 1.261 26 H -0.316 1.316 27 H -0.265 1.265 28 C 0.130 3.870 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.403 0.597 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.261 0.739 47 H 0.038 0.962 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 18.328 -14.374 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.108 0.892 4 N -0.376 5.376 5 C 0.312 3.688 6 O -0.453 6.453 7 C -0.184 4.184 8 C 0.011 3.989 9 O -0.326 6.326 10 C -0.076 4.076 11 C 0.208 3.792 12 F -0.202 7.202 13 F -0.203 7.203 14 C -0.124 4.124 15 H 0.081 0.919 16 C -0.138 4.138 17 C -0.165 4.165 18 C 0.014 3.986 19 N -0.345 5.345 20 C -0.378 4.378 21 H 0.066 0.934 22 C -0.228 4.228 23 N -0.602 5.602 24 Si 0.770 3.230 25 H -0.187 1.187 26 H -0.245 1.245 27 H -0.189 1.189 28 C 0.005 3.995 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.239 0.761 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.194 0.806 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.096 18.803 -14.449 24.065 hybrid contribution -0.161 -1.311 -0.319 1.358 sum -4.257 17.493 -14.768 23.285 Atomic orbital electron populations 1.22243 0.94524 1.02080 1.03095 1.21007 0.94781 0.96633 0.82879 0.89211 1.46367 1.66594 1.14629 1.10055 1.20576 0.76688 0.86769 0.84810 1.90657 1.52040 1.16900 1.85673 1.21514 1.05137 1.00185 0.91573 1.22075 0.99610 0.93738 0.83455 1.87869 1.87619 1.38080 1.18989 1.23983 1.04432 0.94128 0.85035 1.22751 0.72241 0.84232 1.00016 1.92972 1.42722 1.89497 1.95056 1.92973 1.69885 1.61960 1.95439 1.21810 1.00324 0.95424 0.94837 0.91948 1.21478 1.01161 0.98829 0.92301 1.21902 1.00259 0.95729 0.98618 1.21163 0.97341 0.92959 0.87172 1.44474 1.66062 1.22197 1.01746 1.18867 1.17798 0.94569 1.06603 0.93363 1.25888 1.00182 0.96348 1.00431 1.69972 1.34786 1.23120 1.32360 0.86008 0.82100 0.75393 0.79502 1.18734 1.24525 1.18935 1.21468 0.97165 0.92599 0.88272 0.92655 0.93036 0.89273 0.76144 0.87267 0.87197 0.91849 0.91818 0.88014 0.88050 0.80616 0.90108 0.90614 0.93366 0.89234 0.93160 0.94648 0.92988 0.94428 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 8.79 71.98 0.63 -3.41 16 2 C 0.15 4.16 2.41 44.99 0.11 4.26 16 3 H 0.09 2.44 7.58 -2.39 -0.02 2.42 16 4 N -0.73 -20.66 5.00 -442.54 -2.21 -22.87 16 5 C 0.52 14.35 7.79 87.66 0.68 15.03 16 6 O -0.57 -18.00 15.65 -3.04 -0.05 -18.05 16 7 C -0.14 -3.30 6.07 29.85 0.18 -3.12 16 8 C 0.09 1.82 5.23 71.98 0.38 2.20 16 9 O -0.41 -8.81 10.23 -148.98 -1.52 -10.33 16 10 C 0.00 0.02 6.16 71.98 0.44 0.46 16 11 C 0.26 3.39 5.63 71.98 0.41 3.80 16 12 F -0.22 -4.48 17.28 44.97 0.78 -3.71 16 13 F -0.22 -4.45 17.28 44.97 0.78 -3.67 16 14 C -0.10 -3.18 2.33 -10.72 -0.02 -3.21 16 15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.10 -2.54 4.77 30.62 0.15 -2.39 16 17 C -0.13 -3.57 6.08 30.67 0.19 -3.38 16 18 C 0.14 5.05 6.52 86.36 0.56 5.61 16 19 N -0.62 -27.97 2.77 -699.07 -1.94 -29.91 16 20 C -0.25 -13.83 10.03 84.04 0.84 -12.99 16 21 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 22 C -0.03 -1.93 5.23 84.86 0.44 -1.48 16 23 N -0.96 -59.21 13.97 21.65 0.30 -58.91 16 24 Si 0.94 44.75 24.35 68.60 1.67 46.42 16 25 H -0.26 -11.02 6.62 99.48 0.66 -10.36 16 26 H -0.32 -15.65 7.11 99.48 0.71 -14.94 16 27 H -0.26 -12.16 6.64 99.48 0.66 -11.50 16 28 C 0.13 5.04 2.98 86.36 0.26 5.30 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.40 6.32 -2.39 -0.02 1.38 16 31 H 0.09 1.87 6.46 -2.39 -0.02 1.85 16 32 H 0.40 12.08 6.97 -92.71 -0.65 11.43 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 37 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.18 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.08 1.76 6.50 -2.39 -0.02 1.75 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 45 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.04 1.44 5.11 -2.39 -0.01 1.42 16 48 H 0.05 2.02 3.10 -2.39 -0.01 2.02 16 Total: -1.00 -73.60 379.00 3.28 -70.32 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.23 Total: 24.04 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.25 Total: 6.67 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.84 Total: -111.68 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.57 Total: -28.38 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 1.55 Total: -7.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -73.60 3.28 -70.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731555291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.199 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds