Wall clock time and date at job start Tue Mar 31 2020 17:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46960 * 2 1 4 4 N 1.46496 * 109.46759 * 240.00443 * 2 1 3 5 5 C 1.36937 * 120.00166 * 85.00306 * 4 2 1 6 6 H 1.08001 * 119.99867 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47094 * 59.99849 * 9 7 5 11 11 H 1.48501 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47233 * 300.00203 * 9 7 5 13 13 C 1.52998 * 109.46887 * 120.00598 * 2 1 3 14 14 H 1.09002 * 109.49918 * 59.99903 * 13 2 1 15 15 C 1.53039 * 109.49913 * 299.93250 * 13 2 1 16 16 C 1.53106 * 109.50508 * 178.69059 * 15 13 2 17 17 C 1.53185 * 109.33343 * 61.34143 * 16 15 13 18 18 N 1.46927 * 108.77460 * 305.36941 * 17 16 15 19 19 C 1.34785 * 120.62942 * 233.63117 * 18 17 16 20 20 O 1.21284 * 119.99984 * 179.97438 * 19 18 17 21 21 C 1.50695 * 119.99838 * 359.97261 * 19 18 17 22 22 C 1.50705 * 109.47044 * 179.97438 * 21 19 18 23 23 C 1.38263 * 119.98555 * 269.72932 * 22 21 19 24 24 C 1.38232 * 120.04503 * 179.72637 * 23 22 21 25 25 C 1.38215 * 120.02450 * 0.54866 * 24 23 22 26 26 C 1.38438 * 119.97611 * 359.72497 * 25 24 23 27 27 F 1.35097 * 120.02434 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98360 * 90.00764 * 22 21 19 29 29 C 1.46919 * 118.74315 * 53.60638 * 18 17 16 30 30 H 1.08996 * 109.47612 * 59.99559 * 1 2 3 31 31 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47394 * 299.99523 * 1 2 3 33 33 H 0.97003 * 120.00309 * 264.99967 * 4 2 1 34 34 H 0.96996 * 120.00022 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46255 * 298.67520 * 15 13 2 36 36 H 1.08997 * 109.45914 * 58.63125 * 15 13 2 37 37 H 1.09008 * 109.48567 * 301.38299 * 16 15 13 38 38 H 1.08998 * 109.51592 * 181.32062 * 16 15 13 39 39 H 1.08996 * 109.59131 * 185.58096 * 17 16 15 40 40 H 1.08994 * 109.58806 * 65.15323 * 17 16 15 41 41 H 1.08998 * 109.47354 * 300.00452 * 21 19 18 42 42 H 1.09008 * 109.47300 * 60.00401 * 21 19 18 43 43 H 1.07998 * 119.97799 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.98214 * 180.27377 * 24 23 22 45 45 H 1.08005 * 120.01120 * 179.74941 * 25 24 23 46 46 H 1.07998 * 120.01842 * 359.96962 * 28 22 21 47 47 H 1.09001 * 109.59116 * 186.60805 * 29 18 17 48 48 H 1.09006 * 109.70559 * 66.25082 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4242 7 6 2.6122 -0.6615 -3.5091 8 7 2.9261 -1.9383 -3.4499 9 14 2.7899 0.2703 -5.1183 10 1 3.7444 1.3935 -4.9371 11 1 3.3001 -0.6477 -6.1682 12 1 1.4672 0.8062 -5.5287 13 6 2.0400 -0.7214 1.2492 14 1 1.6768 -1.7491 1.2495 15 6 1.5315 0.0004 2.4992 16 6 2.0146 -0.7401 3.7492 17 6 3.5462 -0.7393 3.7789 18 7 4.0440 -1.3000 2.5154 19 6 4.9169 -2.3271 2.5165 20 8 5.3201 -2.7814 1.4667 21 6 5.3918 -2.9108 3.8221 22 6 6.3536 -4.0382 3.5480 23 6 5.8824 -5.3311 3.4134 24 6 6.7629 -6.3653 3.1563 25 6 8.1166 -6.1095 3.0449 26 6 8.5900 -4.8162 3.1852 27 9 9.9129 -4.5650 3.0759 28 6 7.7064 -3.7801 3.4371 29 6 3.5719 -0.7203 1.2506 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2489 -1.6317 -1.1528 34 1 3.2501 -2.3953 -4.2418 35 1 1.9152 1.0206 2.5108 36 1 0.4419 0.0227 2.4877 37 1 1.6517 -1.7678 3.7260 38 1 1.6331 -0.2397 4.6391 39 1 3.8959 -1.3489 4.6121 40 1 3.9089 0.2821 3.8934 41 1 5.8936 -2.1380 4.4045 42 1 4.5374 -3.2907 4.3825 43 1 4.8254 -5.5325 3.5051 44 1 6.3932 -7.3742 3.0469 45 1 8.8047 -6.9183 2.8481 46 1 8.0747 -2.7708 3.5463 47 1 3.9384 -1.3174 0.4156 48 1 3.9367 0.3025 1.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732534001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:08 Heat of formation + Delta-G solvation = -53.125806 kcal Electronic energy + Delta-G solvation = -28924.893956 eV Core-core repulsion = 24893.935215 eV Total energy + Delta-G solvation = -4030.958741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.97008 -40.34312 -39.06470 -37.61908 -35.42079 -33.20362 -32.75192 -31.74203 -30.68564 -29.98578 -28.51852 -27.57480 -25.24079 -23.88797 -23.04449 -22.85994 -22.03084 -20.97024 -19.56455 -18.86015 -17.40358 -17.29474 -16.86224 -16.55688 -16.29180 -15.69672 -15.57052 -15.22029 -14.84129 -14.45795 -14.24661 -14.05648 -13.75106 -13.52750 -13.47253 -13.29067 -13.04030 -12.89372 -12.71613 -12.35190 -12.20365 -12.09396 -12.00368 -11.76060 -11.33433 -11.25799 -11.04229 -10.98020 -10.82085 -10.68845 -10.57725 -10.26159 -10.14304 -9.85253 -9.63987 -9.50827 -9.06213 -8.85654 -8.76291 -8.41986 -6.89151 -5.68312 -2.97777 1.01853 1.09391 2.77084 3.06708 3.48296 3.52037 3.52550 3.54144 4.08403 4.41608 4.57507 4.58998 4.65033 4.75361 4.86210 4.89443 5.01462 5.02831 5.08456 5.19078 5.25363 5.31258 5.36901 5.43018 5.62874 5.67014 5.71183 5.79207 5.82744 5.91481 5.93151 5.97155 6.02382 6.12405 6.15423 6.20783 6.23684 6.31818 6.45384 6.50299 6.54139 6.73796 6.76566 6.78176 6.94102 7.12492 7.56799 7.75540 8.35628 8.49171 9.60209 10.18090 10.52340 11.53794 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.003185 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.581603 B = 8789.064592 C =10754.687126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.241 4.241 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.613 5.613 19 C 0.509 3.491 20 O -0.519 6.519 21 C -0.103 4.103 22 C -0.035 4.035 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.156 4.156 26 C 0.098 3.902 27 F -0.142 7.142 28 C -0.139 4.139 29 C 0.122 3.878 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -3.170 23.154 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.372 4.372 6 H 0.086 0.914 7 C -0.207 4.207 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.018 4.018 18 N -0.347 5.347 19 C 0.296 3.704 20 O -0.394 6.394 21 C -0.143 4.143 22 C -0.035 4.035 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.175 4.175 26 C 0.079 3.921 27 F -0.121 7.121 28 C -0.158 4.158 29 C 0.001 3.999 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.125 0.875 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.886 -3.294 22.411 22.983 hybrid contribution 0.283 0.302 -1.004 1.086 sum 4.168 -2.992 21.407 22.014 Atomic orbital electron populations 1.22485 0.99370 1.00765 0.99847 1.20168 0.91792 0.95239 0.85845 0.93589 1.42440 1.78096 1.10739 1.05268 1.19144 1.36896 0.93754 0.87387 0.91375 1.24727 1.02135 0.95913 0.97950 1.69653 1.50481 1.08631 1.28918 0.86325 0.77661 0.78648 0.83866 1.21332 1.21753 1.21395 1.21755 0.94781 1.00417 0.95290 0.91267 1.21638 1.01043 0.99048 0.93571 1.21932 0.94904 1.01566 0.98825 1.21743 0.94838 0.99242 0.85955 1.48209 1.44623 1.34032 1.07809 1.20379 0.79278 0.79839 0.90889 1.90816 1.55842 1.59541 1.33187 1.20743 0.99406 0.97180 0.96921 1.19125 0.92583 0.94023 0.97790 1.21068 1.00126 0.92047 1.00005 1.20965 0.92153 0.99650 0.97905 1.21128 0.97012 0.95363 1.03973 1.17627 0.77594 0.94221 1.02688 1.91492 1.31853 1.95047 1.93661 1.20936 0.92921 0.98864 1.03102 1.21688 0.93774 0.98917 0.85516 0.92908 0.93644 0.94315 0.78191 0.93479 0.91897 0.91219 0.91597 0.91019 0.90216 0.91384 0.87923 0.87699 0.85407 0.84930 0.84884 0.84974 0.87517 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.18 3.47 2.48 -67.93 -0.17 3.30 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.10 4.52 -53.43 -0.24 -18.34 16 5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 9 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 C -0.10 -1.62 1.97 -90.50 -0.18 -1.80 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.34 4.86 -26.66 -0.13 -1.47 16 16 C -0.13 -1.21 6.08 -26.58 -0.16 -1.37 16 17 C 0.11 0.95 6.34 -3.71 -0.02 0.93 16 18 N -0.61 -8.31 2.97 -172.77 -0.51 -8.82 16 19 C 0.51 7.53 7.69 -10.98 -0.08 7.44 16 20 O -0.52 -10.54 15.45 5.55 0.09 -10.46 16 21 C -0.10 -1.01 4.18 -29.03 -0.12 -1.13 16 22 C -0.03 -0.40 4.37 -104.63 -0.46 -0.86 16 23 C -0.11 -1.25 9.70 -39.57 -0.38 -1.63 16 24 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 25 C -0.16 -1.69 10.03 -39.52 -0.40 -2.09 16 26 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 27 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 28 C -0.14 -1.69 9.68 -39.52 -0.38 -2.07 16 29 C 0.12 2.09 5.47 -3.71 -0.02 2.07 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 33 H 0.38 10.48 7.62 -40.82 -0.31 10.17 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 42 H 0.10 0.75 7.63 -51.92 -0.40 0.36 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 45 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.11 2.35 6.51 -51.93 -0.34 2.01 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -34.40 388.84 -9.63 -44.03 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.46 Total: 8.72 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.10 Total: -8.88 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.03 Total: -55.31 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.40 -9.63 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732534001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.095 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds