Wall clock time and date at job start Tue Mar 31 2020 17:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46960 * 2 1 4 4 N 1.46496 * 109.46759 * 240.00443 * 2 1 3 5 5 C 1.36937 * 120.00166 * 85.00306 * 4 2 1 6 6 H 1.08001 * 119.99867 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47094 * 59.99849 * 9 7 5 11 11 H 1.48501 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47233 * 300.00203 * 9 7 5 13 13 C 1.52998 * 109.46887 * 120.00598 * 2 1 3 14 14 H 1.09002 * 109.49918 * 59.99903 * 13 2 1 15 15 C 1.53039 * 109.49913 * 299.93250 * 13 2 1 16 16 C 1.53106 * 109.50508 * 178.69059 * 15 13 2 17 17 C 1.53185 * 109.33343 * 61.34143 * 16 15 13 18 18 N 1.46927 * 108.77460 * 305.36941 * 17 16 15 19 19 C 1.34785 * 120.62942 * 233.63117 * 18 17 16 20 20 O 1.21284 * 119.99984 * 179.97438 * 19 18 17 21 21 C 1.50695 * 119.99838 * 359.97261 * 19 18 17 22 22 C 1.50705 * 109.47044 * 179.97438 * 21 19 18 23 23 C 1.38263 * 119.98555 * 269.72932 * 22 21 19 24 24 C 1.38232 * 120.04503 * 179.72637 * 23 22 21 25 25 C 1.38215 * 120.02450 * 0.54866 * 24 23 22 26 26 C 1.38438 * 119.97611 * 359.72497 * 25 24 23 27 27 F 1.35097 * 120.02434 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98360 * 90.00764 * 22 21 19 29 29 C 1.46919 * 118.74315 * 53.60638 * 18 17 16 30 30 H 1.08996 * 109.47612 * 59.99559 * 1 2 3 31 31 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47394 * 299.99523 * 1 2 3 33 33 H 0.97003 * 120.00309 * 264.99967 * 4 2 1 34 34 H 0.96996 * 120.00022 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46255 * 298.67520 * 15 13 2 36 36 H 1.08997 * 109.45914 * 58.63125 * 15 13 2 37 37 H 1.09008 * 109.48567 * 301.38299 * 16 15 13 38 38 H 1.08998 * 109.51592 * 181.32062 * 16 15 13 39 39 H 1.08996 * 109.59131 * 185.58096 * 17 16 15 40 40 H 1.08994 * 109.58806 * 65.15323 * 17 16 15 41 41 H 1.08998 * 109.47354 * 300.00452 * 21 19 18 42 42 H 1.09008 * 109.47300 * 60.00401 * 21 19 18 43 43 H 1.07998 * 119.97799 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.98214 * 180.27377 * 24 23 22 45 45 H 1.08005 * 120.01120 * 179.74941 * 25 24 23 46 46 H 1.07998 * 120.01842 * 359.96962 * 28 22 21 47 47 H 1.09001 * 109.59116 * 186.60805 * 29 18 17 48 48 H 1.09006 * 109.70559 * 66.25082 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4242 7 6 2.6122 -0.6615 -3.5091 8 7 2.9261 -1.9383 -3.4499 9 14 2.7899 0.2703 -5.1183 10 1 3.7444 1.3935 -4.9371 11 1 3.3001 -0.6477 -6.1682 12 1 1.4672 0.8062 -5.5287 13 6 2.0400 -0.7214 1.2492 14 1 1.6768 -1.7491 1.2495 15 6 1.5315 0.0004 2.4992 16 6 2.0146 -0.7401 3.7492 17 6 3.5462 -0.7393 3.7789 18 7 4.0440 -1.3000 2.5154 19 6 4.9169 -2.3271 2.5165 20 8 5.3201 -2.7814 1.4667 21 6 5.3918 -2.9108 3.8221 22 6 6.3536 -4.0382 3.5480 23 6 5.8824 -5.3311 3.4134 24 6 6.7629 -6.3653 3.1563 25 6 8.1166 -6.1095 3.0449 26 6 8.5900 -4.8162 3.1852 27 9 9.9129 -4.5650 3.0759 28 6 7.7064 -3.7801 3.4371 29 6 3.5719 -0.7203 1.2506 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2489 -1.6317 -1.1528 34 1 3.2501 -2.3953 -4.2418 35 1 1.9152 1.0206 2.5108 36 1 0.4419 0.0227 2.4877 37 1 1.6517 -1.7678 3.7260 38 1 1.6331 -0.2397 4.6391 39 1 3.8959 -1.3489 4.6121 40 1 3.9089 0.2821 3.8934 41 1 5.8936 -2.1380 4.4045 42 1 4.5374 -3.2907 4.3825 43 1 4.8254 -5.5325 3.5051 44 1 6.3932 -7.3742 3.0469 45 1 8.8047 -6.9183 2.8481 46 1 8.0747 -2.7708 3.5463 47 1 3.9384 -1.3174 0.4156 48 1 3.9367 0.3025 1.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732534001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:07 Heat of formation + Delta-G solvation = -73.995903 kcal Electronic energy + Delta-G solvation = -28925.798951 eV Core-core repulsion = 24893.935215 eV Total energy + Delta-G solvation = -4031.863737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.92603 -41.41602 -39.99129 -38.86523 -36.91564 -34.69272 -33.84941 -33.06364 -31.57360 -31.39551 -30.06361 -28.61503 -26.49212 -25.56800 -24.32786 -23.72087 -22.96407 -22.13270 -21.02502 -19.89073 -19.15040 -18.31611 -18.10724 -17.44203 -17.13307 -16.82129 -16.68057 -16.57191 -16.31985 -15.62986 -15.57961 -15.28420 -14.95451 -14.84393 -14.48389 -14.35064 -14.13781 -14.04091 -13.95862 -13.77120 -13.37158 -13.13667 -12.98460 -12.95024 -12.75538 -12.57355 -12.51929 -12.37302 -12.19181 -12.03096 -11.92278 -11.77382 -11.64025 -11.34702 -11.16531 -10.95373 -10.79131 -9.92289 -9.64109 -9.56205 -8.98524 -7.92018 -5.20344 0.15864 0.24149 1.43720 1.47406 1.53348 1.67575 2.04246 2.56073 2.65266 3.22880 3.41321 3.57464 3.67722 3.80631 3.84105 3.90827 4.00691 4.08180 4.18257 4.24045 4.25873 4.31236 4.37564 4.46490 4.48328 4.57601 4.63000 4.69588 4.81508 4.89198 4.91009 4.97132 5.00305 5.06020 5.07633 5.10214 5.13779 5.22420 5.31006 5.33870 5.41578 5.48640 5.50893 5.57660 5.59695 5.67071 5.93642 6.29020 6.51829 7.26121 7.34270 8.13198 8.34328 9.31361 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.003185 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.581603 B = 8789.064592 C =10754.687126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.737 5.737 5 C -0.235 4.235 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.275 1.275 13 C -0.088 4.088 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.501 3.499 20 O -0.589 6.589 21 C -0.090 4.090 22 C -0.049 4.049 23 C -0.124 4.124 24 C -0.092 4.092 25 C -0.162 4.162 26 C 0.071 3.929 27 F -0.151 7.151 28 C -0.154 4.154 29 C 0.130 3.870 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.367 0.633 34 H 0.247 0.753 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.137 0.863 47 H 0.046 0.954 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -1.942 26.526 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 H 0.062 0.938 4 N -0.377 5.377 5 C -0.367 4.367 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.201 1.201 13 C -0.108 4.108 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.024 4.024 18 N -0.342 5.342 19 C 0.290 3.710 20 O -0.469 6.469 21 C -0.129 4.129 22 C -0.049 4.049 23 C -0.142 4.142 24 C -0.110 4.110 25 C -0.180 4.180 26 C 0.052 3.948 27 F -0.130 7.130 28 C -0.173 4.173 29 C 0.007 3.993 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.155 0.845 47 H 0.064 0.936 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.356 -1.995 25.870 26.054 hybrid contribution 0.714 -0.041 -1.986 2.111 sum 3.071 -2.036 23.884 24.167 Atomic orbital electron populations 1.22319 0.97431 1.00565 1.00969 1.20493 0.92995 0.94924 0.85320 0.93754 1.42679 1.78409 1.10123 1.06503 1.19581 1.34613 0.94109 0.88363 0.90549 1.25550 1.03237 0.96792 1.01535 1.69844 1.52747 1.10450 1.29257 0.85269 0.78019 0.77267 0.79589 1.20510 1.22600 1.20103 1.21582 0.93669 0.99535 0.96012 0.93122 1.21638 1.01636 0.99243 0.92304 1.21937 0.94574 1.01466 0.98611 1.22193 0.95089 1.00717 0.84425 1.48307 1.44081 1.33582 1.08190 1.21344 0.78409 0.79327 0.91879 1.90792 1.58311 1.61739 1.36090 1.20802 1.00481 0.97328 0.94244 1.19401 0.92623 0.95018 0.97902 1.21437 1.01211 0.92129 0.99399 1.21345 0.91770 1.00953 0.96942 1.21425 0.97898 0.95283 1.03409 1.17956 0.77418 0.95273 1.04127 1.91458 1.32480 1.95183 1.93908 1.21147 0.93543 0.99143 1.03478 1.21266 0.94652 0.97465 0.85935 0.94891 0.94484 0.90001 0.80136 0.94380 0.90922 0.90123 0.91866 0.87149 0.86316 0.89832 0.84652 0.84023 0.83699 0.82260 0.83170 0.84503 0.93569 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.14 71.98 0.66 -4.56 16 2 C 0.17 6.61 2.48 44.99 0.11 6.73 16 3 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 4 N -0.74 -38.43 4.52 -322.95 -1.46 -39.89 16 5 C -0.23 -13.44 9.93 84.03 0.83 -12.61 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 8 N -0.97 -63.34 13.06 21.65 0.28 -63.06 16 9 Si 0.97 48.27 29.55 68.60 2.03 50.29 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C -0.09 -2.75 1.97 -10.72 -0.02 -2.78 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.19 4.86 30.64 0.15 -2.04 16 16 C -0.13 -1.68 6.08 30.69 0.19 -1.49 16 17 C 0.10 1.32 6.34 86.36 0.55 1.87 16 18 N -0.61 -15.82 2.97 -818.92 -2.43 -18.25 16 19 C 0.50 14.63 7.69 87.65 0.67 15.30 16 20 O -0.59 -25.32 15.45 -3.04 -0.05 -25.37 16 21 C -0.09 -1.51 4.18 29.10 0.12 -1.39 16 22 C -0.05 -1.08 4.37 -19.87 -0.09 -1.17 16 23 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 24 C -0.09 -1.78 10.04 22.26 0.22 -1.55 16 25 C -0.16 -3.47 10.03 22.31 0.22 -3.24 16 26 C 0.07 1.81 7.30 22.37 0.16 1.97 16 27 F -0.15 -4.07 17.27 44.97 0.78 -3.30 16 28 C -0.15 -3.75 9.68 22.31 0.22 -3.54 16 29 C 0.13 4.58 5.47 86.37 0.47 5.05 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.08 6.40 -2.39 -0.02 2.06 16 33 H 0.37 21.37 7.62 -92.71 -0.71 20.66 16 34 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.46 6.36 -2.39 -0.02 1.44 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.76 5.93 -2.39 -0.01 0.74 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.14 1.41 7.89 -2.39 -0.02 1.39 16 42 H 0.14 1.36 7.63 -2.38 -0.02 1.34 16 43 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 45 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 46 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 47 H 0.05 2.20 6.51 -2.39 -0.02 2.19 16 48 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -82.87 388.84 4.56 -78.31 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.26 Total: 31.34 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.16 Total: -10.08 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -3.61 Total: -121.20 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.29 kcal Total: -82.87 4.56 -78.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732534001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.312 kcal (2) G-P(sol) polarization free energy of solvation -82.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds