Wall clock time and date at job start Tue Mar 31 2020 17:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47574 * 239.99318 * 2 1 3 5 5 C 1.36939 * 119.99967 * 84.99908 * 4 2 1 6 6 H 1.08004 * 119.99797 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00166 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00047 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46993 * 89.99632 * 9 7 5 11 11 H 1.48496 * 109.47095 * 209.99710 * 9 7 5 12 12 H 1.48501 * 109.47061 * 330.00091 * 9 7 5 13 13 C 1.52996 * 109.46934 * 119.99439 * 2 1 3 14 14 H 1.08998 * 109.49973 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50066 * 300.00080 * 13 2 1 16 16 C 1.53039 * 109.54198 * 181.31673 * 15 13 2 17 17 C 1.53196 * 109.33748 * 298.62051 * 16 15 13 18 18 N 1.46992 * 108.73878 * 54.61838 * 17 16 15 19 19 C 1.34784 * 120.60795 * 126.38575 * 18 17 16 20 20 O 1.21283 * 119.99359 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00259 * 0.02599 * 19 18 17 22 22 C 1.50711 * 109.46951 * 179.97438 * 21 19 18 23 23 C 1.38267 * 119.98607 * 90.00028 * 22 21 19 24 24 C 1.38219 * 120.04916 * 179.97438 * 23 22 21 25 25 C 1.38216 * 120.02830 * 0.02562 * 24 23 22 26 26 C 1.38438 * 119.97219 * 0.02562 * 25 24 23 27 27 F 1.35108 * 120.02618 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98412 * 269.72532 * 22 21 19 29 29 C 1.46922 * 118.75940 * 306.41163 * 18 17 16 30 30 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47588 * 300.00327 * 1 2 3 32 32 H 1.09004 * 109.47050 * 60.00421 * 1 2 3 33 33 H 0.96993 * 120.00348 * 265.00476 * 4 2 1 34 34 H 0.97004 * 120.00118 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.45643 * 61.29307 * 15 13 2 36 36 H 1.08998 * 109.45200 * 301.33200 * 15 13 2 37 37 H 1.09002 * 109.49756 * 58.58775 * 16 15 13 38 38 H 1.09000 * 109.49883 * 178.65518 * 16 15 13 39 39 H 1.09001 * 109.58261 * 174.43824 * 17 16 15 40 40 H 1.08996 * 109.58319 * 294.86146 * 17 16 15 41 41 H 1.09001 * 109.47360 * 299.99598 * 21 19 18 42 42 H 1.08998 * 109.47712 * 59.99943 * 21 19 18 43 43 H 1.08003 * 119.97344 * 359.97438 * 23 22 21 44 44 H 1.07997 * 119.98621 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.01550 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.01402 * 359.97438 * 28 22 21 47 47 H 1.09004 * 109.58306 * 293.82373 * 29 18 17 48 48 H 1.08994 * 109.70589 * 173.46329 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6115 -0.6623 -3.5091 8 7 2.9246 -1.9393 -3.4499 9 14 2.7906 0.2696 -5.1181 10 1 4.1533 0.8539 -5.2027 11 1 2.5797 -0.6615 -6.2555 12 1 1.7813 1.3575 -5.1751 13 6 2.0399 -0.7211 1.2493 14 1 3.1299 -0.7218 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7013 3.7493 17 6 1.5532 -2.1443 3.7812 18 7 1.9147 -2.8022 2.5174 19 6 2.5905 -3.9684 2.5195 20 8 2.8835 -4.5013 1.4702 21 6 2.9818 -4.6100 3.8256 22 6 3.7213 -5.8946 3.5525 23 6 5.0967 -5.8836 3.4115 24 6 5.7762 -7.0610 3.1616 25 6 5.0813 -8.2507 3.0518 26 6 3.7041 -8.2627 3.1917 27 9 3.0238 -9.4252 3.0851 28 6 3.0250 -7.0835 3.4488 29 6 1.5263 -2.1644 1.2521 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6318 -1.1524 34 1 3.2473 -2.3968 -4.2420 35 1 0.4403 -0.0203 2.5110 36 1 1.8739 1.0342 2.4873 37 1 3.1563 -0.7032 3.7260 38 1 1.7226 -0.1731 4.6386 39 1 2.0108 -2.6765 4.6151 40 1 0.4693 -2.1441 3.8958 41 1 3.6259 -3.9316 4.3852 42 1 2.0859 -4.8239 4.4084 43 1 5.6405 -4.9544 3.4968 44 1 6.8505 -7.0512 3.0512 45 1 5.6125 -9.1705 2.8561 46 1 1.9512 -7.0925 3.5638 47 1 0.4401 -2.1658 1.1606 48 1 1.9642 -2.7096 0.4161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732534004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:21 Heat of formation + Delta-G solvation = -50.640920 kcal Electronic energy + Delta-G solvation = -28967.366698 eV Core-core repulsion = 24936.515710 eV Total energy + Delta-G solvation = -4030.850989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.97622 -40.39293 -39.11076 -37.69466 -35.42793 -33.21847 -32.74495 -31.85195 -30.68896 -29.87984 -28.36693 -27.51293 -25.20943 -24.33528 -23.17593 -22.88953 -22.09184 -21.12903 -19.35320 -18.56637 -17.41949 -17.34462 -16.88517 -16.56587 -16.29954 -15.71647 -15.60440 -15.19410 -14.79012 -14.60054 -14.24640 -14.10216 -13.78566 -13.67549 -13.52239 -13.26970 -13.00130 -12.95824 -12.76177 -12.43680 -12.21349 -12.11511 -11.92542 -11.74150 -11.53693 -11.26798 -11.07756 -10.98059 -10.82764 -10.60446 -10.44009 -10.23268 -10.20057 -9.88195 -9.67613 -9.49473 -9.07291 -8.86204 -8.77226 -8.42014 -6.90340 -5.68859 -2.98794 1.01050 1.08599 2.74382 3.03700 3.47065 3.50738 3.51711 3.54100 4.07354 4.40585 4.56045 4.57930 4.63467 4.74425 4.85450 4.88305 5.00618 5.01936 5.07403 5.17937 5.24174 5.30632 5.35177 5.42146 5.61850 5.65004 5.69182 5.77894 5.84316 5.87642 5.90811 5.96271 5.96894 6.08184 6.13923 6.14937 6.26607 6.31021 6.37609 6.43354 6.59640 6.66619 6.75855 6.79243 6.91254 7.15005 7.52757 7.75278 8.32458 8.48657 9.59472 10.17728 10.51585 11.53158 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.003062 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.078791 B = 9140.948492 C =10962.661465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.135 4.135 17 C 0.106 3.894 18 N -0.612 5.612 19 C 0.509 3.491 20 O -0.520 6.520 21 C -0.102 4.102 22 C -0.035 4.035 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.156 4.156 26 C 0.098 3.902 27 F -0.142 7.142 28 C -0.140 4.140 29 C 0.116 3.884 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.069 0.931 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 -5.456 23.247 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.346 5.346 19 C 0.296 3.704 20 O -0.395 6.395 21 C -0.142 4.142 22 C -0.036 4.036 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.175 4.175 26 C 0.079 3.921 27 F -0.121 7.121 28 C -0.158 4.158 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.087 0.913 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.360 -5.690 22.507 23.218 hybrid contribution -0.017 0.054 -1.012 1.014 sum 0.343 -5.636 21.495 22.224 Atomic orbital electron populations 1.22575 0.99573 1.00839 0.99940 1.20166 0.91803 0.95253 0.85819 0.93384 1.42521 1.78128 1.10831 1.05311 1.19210 1.36768 0.93794 0.87394 0.91284 1.24747 1.02210 0.95925 0.97998 1.69677 1.50617 1.08561 1.28831 0.86237 0.77712 0.78582 0.83927 1.21808 1.21827 1.20840 1.21768 1.00887 0.94344 0.95300 0.90942 1.21623 1.00901 0.99200 0.93558 1.21925 1.01398 0.95109 0.98846 1.21759 1.00314 0.93772 0.85869 1.48204 1.56527 1.22138 1.07736 1.20395 0.78139 0.80912 0.90932 1.90813 1.53241 1.62157 1.33241 1.20739 1.01753 0.94868 0.96866 1.19126 0.93527 0.93074 0.97837 1.21070 0.93596 0.98597 0.99942 1.20964 1.00256 0.91547 0.97904 1.21129 0.92388 0.99982 1.03955 1.17630 0.90261 0.81555 1.02688 1.91495 1.80166 1.46707 1.93688 1.20934 1.00592 0.91186 1.03124 1.21805 0.99764 0.93272 0.85675 0.93332 0.94268 0.92913 0.78023 0.93499 0.91422 0.91668 0.91568 0.90985 0.90146 0.91341 0.87663 0.87899 0.85398 0.84925 0.84878 0.84970 0.91294 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.79 37.15 0.33 -2.63 16 2 C 0.18 3.49 2.72 -67.94 -0.18 3.31 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.35 5.04 -53.43 -0.27 -18.62 16 5 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 9 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.64 2.33 -90.50 -0.21 -1.85 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.34 4.78 -26.69 -0.13 -1.46 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C 0.11 0.94 6.34 -3.67 -0.02 0.91 16 18 N -0.61 -8.13 2.97 -172.72 -0.51 -8.65 16 19 C 0.51 7.41 7.69 -10.99 -0.08 7.32 16 20 O -0.52 -10.38 15.45 5.55 0.09 -10.30 16 21 C -0.10 -0.99 4.18 -29.03 -0.12 -1.11 16 22 C -0.04 -0.40 4.37 -104.63 -0.46 -0.86 16 23 C -0.11 -1.24 9.70 -39.58 -0.38 -1.62 16 24 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 25 C -0.16 -1.68 10.03 -39.52 -0.40 -2.07 16 26 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 27 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 28 C -0.14 -1.66 9.68 -39.51 -0.38 -2.04 16 29 C 0.12 1.92 5.21 -3.71 -0.02 1.90 16 30 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 31 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.38 10.54 6.17 -40.82 -0.25 10.29 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.75 7.64 -51.93 -0.40 0.35 16 42 H 0.10 0.72 7.88 -51.93 -0.41 0.31 16 43 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 47 H 0.07 1.11 6.18 -51.93 -0.32 0.79 16 48 H 0.10 2.13 5.60 -51.93 -0.29 1.84 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -34.78 383.33 -9.51 -44.29 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.17 Total: 9.09 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.16 Total: -9.33 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.06 Total: -55.56 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.78 -9.51 -44.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732534004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.346 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds