Wall clock time and date at job start Tue Mar 31 2020 17:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47574 * 239.99318 * 2 1 3 5 5 C 1.36939 * 119.99967 * 84.99908 * 4 2 1 6 6 H 1.08004 * 119.99797 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00166 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00047 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46993 * 89.99632 * 9 7 5 11 11 H 1.48496 * 109.47095 * 209.99710 * 9 7 5 12 12 H 1.48501 * 109.47061 * 330.00091 * 9 7 5 13 13 C 1.52996 * 109.46934 * 119.99439 * 2 1 3 14 14 H 1.08998 * 109.49973 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50066 * 300.00080 * 13 2 1 16 16 C 1.53039 * 109.54198 * 181.31673 * 15 13 2 17 17 C 1.53196 * 109.33748 * 298.62051 * 16 15 13 18 18 N 1.46992 * 108.73878 * 54.61838 * 17 16 15 19 19 C 1.34784 * 120.60795 * 126.38575 * 18 17 16 20 20 O 1.21283 * 119.99359 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00259 * 0.02599 * 19 18 17 22 22 C 1.50711 * 109.46951 * 179.97438 * 21 19 18 23 23 C 1.38267 * 119.98607 * 90.00028 * 22 21 19 24 24 C 1.38219 * 120.04916 * 179.97438 * 23 22 21 25 25 C 1.38216 * 120.02830 * 0.02562 * 24 23 22 26 26 C 1.38438 * 119.97219 * 0.02562 * 25 24 23 27 27 F 1.35108 * 120.02618 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98412 * 269.72532 * 22 21 19 29 29 C 1.46922 * 118.75940 * 306.41163 * 18 17 16 30 30 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47588 * 300.00327 * 1 2 3 32 32 H 1.09004 * 109.47050 * 60.00421 * 1 2 3 33 33 H 0.96993 * 120.00348 * 265.00476 * 4 2 1 34 34 H 0.97004 * 120.00118 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.45643 * 61.29307 * 15 13 2 36 36 H 1.08998 * 109.45200 * 301.33200 * 15 13 2 37 37 H 1.09002 * 109.49756 * 58.58775 * 16 15 13 38 38 H 1.09000 * 109.49883 * 178.65518 * 16 15 13 39 39 H 1.09001 * 109.58261 * 174.43824 * 17 16 15 40 40 H 1.08996 * 109.58319 * 294.86146 * 17 16 15 41 41 H 1.09001 * 109.47360 * 299.99598 * 21 19 18 42 42 H 1.08998 * 109.47712 * 59.99943 * 21 19 18 43 43 H 1.08003 * 119.97344 * 359.97438 * 23 22 21 44 44 H 1.07997 * 119.98621 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.01550 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.01402 * 359.97438 * 28 22 21 47 47 H 1.09004 * 109.58306 * 293.82373 * 29 18 17 48 48 H 1.08994 * 109.70589 * 173.46329 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6115 -0.6623 -3.5091 8 7 2.9246 -1.9393 -3.4499 9 14 2.7906 0.2696 -5.1181 10 1 4.1533 0.8539 -5.2027 11 1 2.5797 -0.6615 -6.2555 12 1 1.7813 1.3575 -5.1751 13 6 2.0399 -0.7211 1.2493 14 1 3.1299 -0.7218 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7013 3.7493 17 6 1.5532 -2.1443 3.7812 18 7 1.9147 -2.8022 2.5174 19 6 2.5905 -3.9684 2.5195 20 8 2.8835 -4.5013 1.4702 21 6 2.9818 -4.6100 3.8256 22 6 3.7213 -5.8946 3.5525 23 6 5.0967 -5.8836 3.4115 24 6 5.7762 -7.0610 3.1616 25 6 5.0813 -8.2507 3.0518 26 6 3.7041 -8.2627 3.1917 27 9 3.0238 -9.4252 3.0851 28 6 3.0250 -7.0835 3.4488 29 6 1.5263 -2.1644 1.2521 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6318 -1.1524 34 1 3.2473 -2.3968 -4.2420 35 1 0.4403 -0.0203 2.5110 36 1 1.8739 1.0342 2.4873 37 1 3.1563 -0.7032 3.7260 38 1 1.7226 -0.1731 4.6386 39 1 2.0108 -2.6765 4.6151 40 1 0.4693 -2.1441 3.8958 41 1 3.6259 -3.9316 4.3852 42 1 2.0859 -4.8239 4.4084 43 1 5.6405 -4.9544 3.4968 44 1 6.8505 -7.0512 3.0512 45 1 5.6125 -9.1705 2.8561 46 1 1.9512 -7.0925 3.5638 47 1 0.4401 -2.1658 1.1606 48 1 1.9642 -2.7096 0.4161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732534004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:20 Heat of formation + Delta-G solvation = -72.042991 kcal Electronic energy + Delta-G solvation = -28968.294762 eV Core-core repulsion = 24936.515710 eV Total energy + Delta-G solvation = -4031.779052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.91955 -41.45434 -40.03766 -38.92409 -36.89645 -34.71412 -33.82756 -33.13026 -31.56231 -31.40294 -29.75145 -28.62640 -26.40031 -25.95216 -24.62195 -23.72892 -23.00563 -22.26243 -20.61614 -19.72136 -19.22420 -18.31029 -18.10064 -17.44075 -17.13470 -16.86175 -16.70262 -16.58597 -16.21385 -15.76117 -15.51533 -15.36505 -15.05654 -14.94947 -14.54544 -14.24737 -14.20368 -14.02661 -13.95151 -13.84303 -13.33128 -13.08783 -12.97929 -12.95192 -12.83186 -12.63379 -12.56615 -12.30790 -12.13090 -11.98084 -11.83493 -11.77102 -11.70724 -11.35860 -11.15106 -10.94039 -10.81580 -9.92236 -9.64092 -9.53992 -9.01135 -7.92921 -5.22438 0.15898 0.24220 1.43833 1.46453 1.54866 1.67198 2.03734 2.55482 2.65151 3.22913 3.39866 3.57450 3.67543 3.80728 3.84770 3.93102 3.96762 4.08152 4.15436 4.22638 4.24588 4.31624 4.38966 4.43824 4.46756 4.57177 4.63625 4.66981 4.74793 4.86646 4.90718 4.94578 4.97958 5.07847 5.11830 5.13729 5.14940 5.20590 5.25980 5.33825 5.41354 5.48047 5.48766 5.53778 5.60999 5.70596 5.93617 6.28175 6.50685 7.25433 7.33144 8.12555 8.33203 9.30507 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.003062 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.078791 B = 9140.948492 C =10962.661465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.045 0.955 4 N -0.742 5.742 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.972 3.028 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.090 4.090 14 H 0.044 0.956 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.501 3.499 20 O -0.589 6.589 21 C -0.090 4.090 22 C -0.049 4.049 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.162 4.162 26 C 0.072 3.928 27 F -0.151 7.151 28 C -0.153 4.153 29 C 0.125 3.875 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.159 0.841 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.073 0.927 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -3.489 26.546 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.063 0.937 4 N -0.383 5.383 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.625 5.625 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.110 4.110 14 H 0.063 0.937 15 C -0.148 4.148 16 C -0.167 4.167 17 C -0.024 4.024 18 N -0.341 5.341 19 C 0.290 3.710 20 O -0.469 6.469 21 C -0.129 4.129 22 C -0.049 4.049 23 C -0.143 4.143 24 C -0.111 4.111 25 C -0.180 4.180 26 C 0.053 3.947 27 F -0.130 7.130 28 C -0.172 4.172 29 C 0.002 3.998 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.176 0.824 45 H 0.168 0.832 46 H 0.157 0.843 47 H 0.091 0.909 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.250 -3.647 25.894 26.150 hybrid contribution 0.148 -0.508 -1.973 2.043 sum -0.102 -4.155 23.921 24.279 Atomic orbital electron populations 1.22394 0.97442 1.00743 1.01035 1.20492 0.93162 0.94865 0.85294 0.93669 1.42813 1.78492 1.10366 1.06613 1.19660 1.34581 0.94162 0.88403 0.90430 1.25604 1.03237 0.96797 1.01686 1.69877 1.52866 1.10466 1.29266 0.85148 0.77937 0.77415 0.79343 1.21464 1.22565 1.19064 1.21580 0.99083 0.94226 0.96079 0.93721 1.21622 1.01670 0.99236 0.92253 1.21930 1.01033 0.95083 0.98634 1.22212 1.01972 0.93785 0.84381 1.48316 1.55752 1.21900 1.08176 1.21343 0.77034 0.80710 0.91893 1.90790 1.55980 1.64041 1.36096 1.20802 1.03665 0.94144 0.94266 1.19403 0.94033 0.93609 0.97903 1.21428 0.93830 0.99543 0.99463 1.21331 1.01642 0.91069 0.97015 1.21420 0.92010 1.01165 1.03420 1.17957 0.91119 0.81574 1.04079 1.91462 1.80438 1.47166 1.93927 1.21149 1.01153 0.91500 1.03378 1.21413 0.99320 0.93097 0.86012 0.94012 0.89902 0.94970 0.79813 0.94327 0.90036 0.90916 0.92198 0.87098 0.86319 0.89445 0.84160 0.84496 0.83876 0.82363 0.83186 0.84324 0.90912 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 8.79 71.98 0.63 -4.68 16 2 C 0.17 6.65 2.72 44.99 0.12 6.77 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.74 -39.13 5.04 -322.96 -1.63 -40.76 16 5 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 8 N -0.97 -63.79 13.06 21.65 0.28 -63.51 16 9 Si 0.97 48.13 29.55 68.60 2.03 50.15 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C -0.09 -2.84 2.33 -10.72 -0.02 -2.87 16 14 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 15 C -0.11 -2.19 4.78 30.62 0.15 -2.05 16 16 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 17 C 0.10 1.28 6.34 86.35 0.55 1.83 16 18 N -0.61 -15.40 2.97 -818.74 -2.43 -17.83 16 19 C 0.50 14.35 7.69 87.65 0.67 15.03 16 20 O -0.59 -24.90 15.45 -3.04 -0.05 -24.94 16 21 C -0.09 -1.49 4.18 29.10 0.12 -1.37 16 22 C -0.05 -1.07 4.37 -19.87 -0.09 -1.16 16 23 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 24 C -0.09 -1.79 10.04 22.26 0.22 -1.57 16 25 C -0.16 -3.45 10.03 22.31 0.22 -3.22 16 26 C 0.07 1.80 7.30 22.38 0.16 1.96 16 27 F -0.15 -4.00 17.27 44.97 0.78 -3.22 16 28 C -0.15 -3.64 9.68 22.31 0.22 -3.43 16 29 C 0.12 4.23 5.21 86.36 0.45 4.68 16 30 H 0.04 1.46 6.32 -2.39 -0.02 1.44 16 31 H 0.08 2.07 6.46 -2.39 -0.02 2.06 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.37 21.67 6.17 -92.71 -0.57 21.10 16 34 H 0.25 15.83 8.31 -92.71 -0.77 15.05 16 35 H 0.08 1.43 6.50 -2.38 -0.02 1.42 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.12 0.71 5.94 -2.39 -0.01 0.70 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.14 1.35 7.64 -2.39 -0.02 1.33 16 42 H 0.14 1.34 7.88 -2.39 -0.02 1.33 16 43 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.07 2.36 6.18 -2.39 -0.01 2.34 16 48 H 0.04 1.99 5.60 -2.39 -0.01 1.97 16 Total: -1.00 -83.56 383.33 4.49 -79.07 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.40 Total: 32.22 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.11 Total: -11.17 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.78 Total: -122.10 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal Total: -83.56 4.49 -79.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732534004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.024 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds