Wall clock time and date at job start Tue Mar 31 2020 18:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36945 * 119.99819 * 2 1 4 4 H 1.08005 * 119.99729 * 200.35772 * 3 2 1 5 5 C 1.38807 * 119.99846 * 20.35513 * 3 2 1 6 6 N 1.31621 * 119.99906 * 14.99468 * 5 3 2 7 7 Si 1.86801 * 119.99741 * 194.98695 * 5 3 2 8 8 H 1.48500 * 109.46969 * 85.01210 * 7 5 3 9 9 H 1.48502 * 109.47099 * 205.00599 * 7 5 3 10 10 H 1.48497 * 109.47423 * 325.00615 * 7 5 3 11 11 C 1.46497 * 120.00289 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47238 * 270.00224 * 11 2 1 13 13 C 1.52996 * 109.47279 * 179.97438 * 12 11 2 14 14 C 1.53358 * 109.42026 * 295.12820 * 13 12 11 15 15 C 1.53186 * 109.15047 * 178.67107 * 14 13 12 16 16 N 1.46930 * 108.89233 * 54.58033 * 15 14 13 17 17 C 1.34782 * 120.62901 * 126.33623 * 16 15 14 18 18 O 1.21275 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99405 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.46518 * 180.02562 * 19 17 16 21 21 C 1.42901 * 113.99665 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.46986 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47253 * 299.99957 * 22 21 20 24 24 F 1.39903 * 109.47420 * 60.00058 * 22 21 20 25 25 C 1.46929 * 118.73973 * 306.32186 * 16 15 14 26 26 C 1.53040 * 109.46279 * 175.00437 * 13 12 11 27 27 H 1.08998 * 109.47251 * 275.09576 * 1 2 3 28 28 H 1.08996 * 109.46735 * 35.10360 * 1 2 3 29 29 H 1.09007 * 109.46483 * 155.09639 * 1 2 3 30 30 H 0.97003 * 119.99486 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47370 * 150.00659 * 11 2 1 32 32 H 1.08995 * 109.47137 * 30.00379 * 11 2 1 33 33 H 1.08999 * 109.47305 * 60.00049 * 12 11 2 34 34 H 1.08995 * 109.47183 * 300.00127 * 12 11 2 35 35 H 1.09000 * 109.45949 * 55.02834 * 13 12 11 36 36 H 1.09003 * 109.67763 * 58.70796 * 14 13 12 37 37 H 1.09002 * 109.47277 * 298.51683 * 14 13 12 38 38 H 1.08999 * 109.58891 * 294.72426 * 15 14 13 39 39 H 1.09005 * 109.58762 * 174.43559 * 15 14 13 40 40 H 1.09000 * 109.47161 * 299.99850 * 19 17 16 41 41 H 1.08990 * 109.47299 * 60.00545 * 19 17 16 42 42 H 1.08996 * 109.47224 * 299.99553 * 21 20 19 43 43 H 1.09000 * 109.47659 * 59.99923 * 21 20 19 44 44 H 1.09007 * 109.47269 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.58722 * 173.39927 * 25 16 15 46 46 H 1.09004 * 109.58024 * 293.67823 * 25 16 15 47 47 H 1.08999 * 109.50166 * 61.43205 * 26 13 12 48 48 H 1.09001 * 109.51975 * 301.35271 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1791 1.2152 -0.3254 5 6 1.5206 2.3505 0.4181 6 7 0.3874 2.2836 1.0844 7 14 2.2824 4.0127 0.0355 8 1 1.8681 4.4460 -1.3231 9 1 1.8221 5.0100 1.0349 10 1 3.7623 3.9035 0.0905 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2170 -3.0350 1.4439 14 6 2.3375 -4.1313 0.8303 15 6 3.1206 -5.4476 0.8036 16 7 3.5988 -5.7444 2.1608 17 6 3.3297 -6.9317 2.7393 18 8 2.6878 -7.7672 2.1388 19 6 3.8267 -7.2208 4.1324 20 8 3.4172 -8.5335 4.5212 21 6 3.8391 -8.9089 5.8339 22 6 3.3471 -10.3245 6.1423 23 9 1.9502 -10.3579 6.0739 24 9 3.8812 -11.2179 5.2075 25 6 4.3760 -4.7225 2.8753 26 6 3.5808 -3.4132 2.8815 27 1 -0.3633 0.0913 1.0236 28 1 -0.3632 0.8407 -0.5910 29 1 -0.3632 -0.9322 -0.4328 30 1 -0.0520 3.0974 1.3769 31 1 3.1500 -1.1385 -0.5132 32 1 1.6085 -2.0285 -0.5130 33 1 1.5001 -1.8399 1.9572 34 1 3.0415 -0.9499 1.9568 35 1 4.1279 -2.9290 0.8547 36 1 2.0593 -3.8527 -0.1861 37 1 1.4379 -4.2553 1.4332 38 1 3.9716 -5.3529 0.1290 39 1 2.4705 -6.2527 0.4610 40 1 4.9148 -7.1598 4.1499 41 1 3.4106 -6.4898 4.8256 42 1 4.9274 -8.8825 5.8873 43 1 3.4226 -8.2132 6.5623 44 1 3.6692 -10.6110 7.1435 45 1 4.5522 -5.0480 3.9005 46 1 5.3303 -4.5705 2.3710 47 1 2.6695 -3.5438 3.4651 48 1 4.1860 -2.6221 3.3242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732549722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:44 Heat of formation + Delta-G solvation = -166.368178 kcal Electronic energy + Delta-G solvation = -29005.349131 eV Core-core repulsion = 24538.710607 eV Total energy + Delta-G solvation = -4466.638524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.24451 -47.28326 -40.46007 -38.51925 -37.50823 -35.78892 -33.90552 -31.65117 -31.29169 -30.74626 -29.05397 -27.56570 -25.85714 -25.05907 -23.47249 -23.18118 -22.50728 -20.80443 -19.92075 -19.22901 -18.31680 -17.88009 -17.71369 -16.77757 -16.66567 -16.54102 -16.31593 -15.68298 -15.11817 -14.85343 -14.52587 -14.26704 -14.16948 -13.90657 -13.79488 -13.73573 -13.62949 -13.24155 -13.18058 -13.04662 -12.61096 -12.41691 -12.35213 -12.24265 -11.91865 -11.42703 -11.33919 -11.25378 -10.93535 -10.88081 -10.66078 -10.57670 -10.38674 -10.30755 -10.22253 -10.04258 -9.93352 -9.74261 -9.60640 -8.80143 -8.51045 -6.73686 -5.69822 -3.12856 2.29182 2.38817 3.12154 3.38791 3.45056 3.45922 3.47696 3.72691 3.98954 4.17117 4.49746 4.51360 4.52954 4.65377 4.66123 4.70696 4.83797 4.89477 4.92159 5.05207 5.19871 5.25710 5.43830 5.46957 5.59838 5.68842 5.76330 5.84732 5.89350 6.07852 6.16331 6.25672 6.29354 6.33727 6.43145 6.56445 6.59049 6.78749 6.94163 7.12790 7.17058 7.40979 7.75052 7.82968 7.96749 8.42413 9.26808 9.91925 10.40186 11.35493 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.001816 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.198418 B =15417.115084 C =15515.114611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.605 5.605 3 C -0.250 4.250 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.152 3.848 12 C -0.131 4.131 13 C -0.085 4.085 14 C -0.129 4.129 15 C 0.113 3.887 16 N -0.608 5.608 17 C 0.515 3.485 18 O -0.520 6.520 19 C 0.045 3.955 20 O -0.352 6.352 21 C 0.006 3.994 22 C 0.273 3.727 23 F -0.198 7.198 24 F -0.199 7.199 25 C 0.105 3.895 26 C -0.130 4.130 27 H 0.027 0.973 28 H 0.041 0.959 29 H -0.004 1.004 30 H 0.251 0.749 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -21.629 11.584 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.328 5.328 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.171 4.171 13 C -0.105 4.105 14 C -0.167 4.167 15 C -0.009 4.009 16 N -0.344 5.344 17 C 0.302 3.698 18 O -0.395 6.395 19 C -0.034 4.034 20 O -0.269 6.269 21 C -0.072 4.072 22 C 0.219 3.781 23 F -0.179 7.179 24 F -0.180 7.180 25 C -0.017 4.017 26 C -0.168 4.168 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.187 -22.091 11.158 26.763 hybrid contribution 0.498 1.304 0.208 1.412 sum 10.686 -20.786 11.365 25.989 Atomic orbital electron populations 1.20769 0.82672 0.95339 0.99292 1.44010 1.01899 1.00866 1.86008 1.19208 0.96865 0.85109 1.36812 0.91422 1.24966 0.97967 0.98308 0.98790 1.70089 1.18914 1.26656 1.39773 0.86295 0.78562 0.84196 0.77622 1.21542 1.21843 1.20644 1.20865 0.95459 0.87880 0.93264 1.22272 0.99372 0.93945 1.01534 1.21227 0.98816 0.95710 0.94718 1.22088 0.98650 0.93478 1.02514 1.21694 0.98982 0.98491 0.81742 1.48078 1.54661 1.14444 1.17182 1.20066 0.80443 0.81920 0.87397 1.90742 1.38816 1.45599 1.64342 1.22331 1.00097 0.85859 0.95159 1.88101 1.77277 1.31193 1.30377 1.23772 1.01000 0.95311 0.87132 1.21985 0.75631 0.87782 0.92695 1.93033 1.30578 1.96966 1.97312 1.93026 1.85696 1.70140 1.69134 1.21858 0.94735 0.88629 0.96526 1.21996 1.00527 0.95790 0.98521 0.95432 0.94020 0.98500 0.93852 0.94187 0.94514 0.92878 0.91929 0.91317 0.89958 0.91608 0.91355 0.89136 0.89933 0.89762 0.89906 0.89830 0.85692 0.90431 0.90863 0.91511 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 9.02 59.85 0.54 4.63 16 2 N -0.61 -15.19 2.93 -181.12 -0.53 -15.72 16 3 C -0.25 -6.85 9.68 -15.06 -0.15 -7.00 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.00 -0.07 5.06 -17.43 -0.09 -0.16 16 6 N -0.91 -26.60 10.67 55.49 0.59 -26.01 16 7 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.15 3.01 5.47 -4.04 -0.02 2.99 16 12 C -0.13 -2.26 5.01 -26.73 -0.13 -2.39 16 13 C -0.09 -1.07 2.15 -90.42 -0.19 -1.27 16 14 C -0.13 -1.58 5.16 -26.45 -0.14 -1.71 16 15 C 0.11 1.28 6.42 -3.71 -0.02 1.26 16 16 N -0.61 -6.55 2.97 -172.76 -0.51 -7.06 16 17 C 0.52 6.43 7.78 -10.98 -0.09 6.34 16 18 O -0.52 -8.92 15.91 -14.35 -0.23 -9.15 16 19 C 0.05 0.38 4.76 36.01 0.17 0.56 16 20 O -0.35 -3.83 9.76 -55.14 -0.54 -4.37 16 21 C 0.01 0.03 6.16 37.16 0.23 0.26 16 22 C 0.27 1.77 5.63 37.16 0.21 1.98 16 23 F -0.20 -2.00 17.28 2.25 0.04 -1.96 16 24 F -0.20 -1.95 17.28 2.25 0.04 -1.91 16 25 C 0.11 0.85 6.34 -3.71 -0.02 0.83 16 26 C -0.13 -1.34 5.36 -26.61 -0.14 -1.48 16 27 H 0.03 0.74 7.40 -51.93 -0.38 0.35 16 28 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 29 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 0.77 8.03 -51.93 -0.42 0.36 16 32 H 0.04 0.67 6.25 -51.93 -0.32 0.34 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.01 6.52 -51.93 -0.34 0.67 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 40 H 0.08 0.46 7.94 -51.93 -0.41 0.04 16 41 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 45 H 0.08 0.42 5.93 -51.93 -0.31 0.12 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -36.10 389.26 -8.08 -44.18 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -7.93 Total: -5.51 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 0.15 Total: 4.83 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.45 Total: -48.78 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.77 Total: -13.52 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.10 -8.08 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732549722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.191 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds