Wall clock time and date at job start Tue Mar 31 2020 18:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36945 * 119.99819 * 2 1 4 4 H 1.08005 * 119.99729 * 200.35772 * 3 2 1 5 5 C 1.38807 * 119.99846 * 20.35513 * 3 2 1 6 6 N 1.31621 * 119.99906 * 14.99468 * 5 3 2 7 7 Si 1.86801 * 119.99741 * 194.98695 * 5 3 2 8 8 H 1.48500 * 109.46969 * 85.01210 * 7 5 3 9 9 H 1.48502 * 109.47099 * 205.00599 * 7 5 3 10 10 H 1.48497 * 109.47423 * 325.00615 * 7 5 3 11 11 C 1.46497 * 120.00289 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47238 * 270.00224 * 11 2 1 13 13 C 1.52996 * 109.47279 * 179.97438 * 12 11 2 14 14 C 1.53358 * 109.42026 * 295.12820 * 13 12 11 15 15 C 1.53186 * 109.15047 * 178.67107 * 14 13 12 16 16 N 1.46930 * 108.89233 * 54.58033 * 15 14 13 17 17 C 1.34782 * 120.62901 * 126.33623 * 16 15 14 18 18 O 1.21275 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99405 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.46518 * 180.02562 * 19 17 16 21 21 C 1.42901 * 113.99665 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.46986 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47253 * 299.99957 * 22 21 20 24 24 F 1.39903 * 109.47420 * 60.00058 * 22 21 20 25 25 C 1.46929 * 118.73973 * 306.32186 * 16 15 14 26 26 C 1.53040 * 109.46279 * 175.00437 * 13 12 11 27 27 H 1.08998 * 109.47251 * 275.09576 * 1 2 3 28 28 H 1.08996 * 109.46735 * 35.10360 * 1 2 3 29 29 H 1.09007 * 109.46483 * 155.09639 * 1 2 3 30 30 H 0.97003 * 119.99486 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47370 * 150.00659 * 11 2 1 32 32 H 1.08995 * 109.47137 * 30.00379 * 11 2 1 33 33 H 1.08999 * 109.47305 * 60.00049 * 12 11 2 34 34 H 1.08995 * 109.47183 * 300.00127 * 12 11 2 35 35 H 1.09000 * 109.45949 * 55.02834 * 13 12 11 36 36 H 1.09003 * 109.67763 * 58.70796 * 14 13 12 37 37 H 1.09002 * 109.47277 * 298.51683 * 14 13 12 38 38 H 1.08999 * 109.58891 * 294.72426 * 15 14 13 39 39 H 1.09005 * 109.58762 * 174.43559 * 15 14 13 40 40 H 1.09000 * 109.47161 * 299.99850 * 19 17 16 41 41 H 1.08990 * 109.47299 * 60.00545 * 19 17 16 42 42 H 1.08996 * 109.47224 * 299.99553 * 21 20 19 43 43 H 1.09000 * 109.47659 * 59.99923 * 21 20 19 44 44 H 1.09007 * 109.47269 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.58722 * 173.39927 * 25 16 15 46 46 H 1.09004 * 109.58024 * 293.67823 * 25 16 15 47 47 H 1.08999 * 109.50166 * 61.43205 * 26 13 12 48 48 H 1.09001 * 109.51975 * 301.35271 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1791 1.2152 -0.3254 5 6 1.5206 2.3505 0.4181 6 7 0.3874 2.2836 1.0844 7 14 2.2824 4.0127 0.0355 8 1 1.8681 4.4460 -1.3231 9 1 1.8221 5.0100 1.0349 10 1 3.7623 3.9035 0.0905 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2170 -3.0350 1.4439 14 6 2.3375 -4.1313 0.8303 15 6 3.1206 -5.4476 0.8036 16 7 3.5988 -5.7444 2.1608 17 6 3.3297 -6.9317 2.7393 18 8 2.6878 -7.7672 2.1388 19 6 3.8267 -7.2208 4.1324 20 8 3.4172 -8.5335 4.5212 21 6 3.8391 -8.9089 5.8339 22 6 3.3471 -10.3245 6.1423 23 9 1.9502 -10.3579 6.0739 24 9 3.8812 -11.2179 5.2075 25 6 4.3760 -4.7225 2.8753 26 6 3.5808 -3.4132 2.8815 27 1 -0.3633 0.0913 1.0236 28 1 -0.3632 0.8407 -0.5910 29 1 -0.3632 -0.9322 -0.4328 30 1 -0.0520 3.0974 1.3769 31 1 3.1500 -1.1385 -0.5132 32 1 1.6085 -2.0285 -0.5130 33 1 1.5001 -1.8399 1.9572 34 1 3.0415 -0.9499 1.9568 35 1 4.1279 -2.9290 0.8547 36 1 2.0593 -3.8527 -0.1861 37 1 1.4379 -4.2553 1.4332 38 1 3.9716 -5.3529 0.1290 39 1 2.4705 -6.2527 0.4610 40 1 4.9148 -7.1598 4.1499 41 1 3.4106 -6.4898 4.8256 42 1 4.9274 -8.8825 5.8873 43 1 3.4226 -8.2132 6.5623 44 1 3.6692 -10.6110 7.1435 45 1 4.5522 -5.0480 3.9005 46 1 5.3303 -4.5705 2.3710 47 1 2.6695 -3.5438 3.4651 48 1 4.1860 -2.6221 3.3242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732549722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:43 Heat of formation + Delta-G solvation = -189.039295 kcal Electronic energy + Delta-G solvation = -29006.332225 eV Core-core repulsion = 24538.710607 eV Total energy + Delta-G solvation = -4467.621617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.82456 -47.90010 -41.33366 -39.33522 -38.43365 -37.45730 -35.21464 -33.15733 -32.40363 -31.35132 -30.35483 -28.43188 -27.89131 -26.37496 -24.22590 -23.92385 -23.77605 -22.18771 -21.23965 -20.10589 -18.88610 -18.72020 -18.42804 -18.37485 -17.46851 -17.20495 -17.01660 -16.78997 -16.40779 -15.98893 -15.64390 -15.58028 -15.18801 -15.08700 -14.86437 -14.78092 -14.36444 -14.33412 -14.27374 -14.02656 -13.83634 -13.54448 -13.27905 -13.16942 -12.97737 -12.84963 -12.76542 -12.58919 -12.43328 -12.18375 -12.10048 -12.02651 -11.83911 -11.63861 -11.55184 -11.37848 -11.11452 -10.88992 -10.77249 -10.59719 -9.69496 -8.77568 -7.80842 -5.26092 1.46684 1.49088 1.50284 1.56671 1.64525 2.52958 2.59274 3.02170 3.32167 3.37889 3.51953 3.61555 3.67725 3.82844 3.88121 4.05068 4.09844 4.13898 4.15044 4.21992 4.34325 4.35572 4.45508 4.49843 4.55414 4.59572 4.75823 4.77241 4.83134 4.85500 4.93257 5.04307 5.09791 5.11124 5.20100 5.30903 5.34826 5.49433 5.56465 5.60870 5.67765 5.73483 5.86860 6.34829 6.36011 7.10201 7.16889 7.91177 8.34511 9.23273 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.001816 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.198418 B =15417.115084 C =15515.114611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.256 4.256 4 H 0.074 0.926 5 C -0.060 4.060 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.297 1.297 10 H -0.266 1.266 11 C 0.147 3.853 12 C -0.115 4.115 13 C -0.076 4.076 14 C -0.122 4.122 15 C 0.115 3.885 16 N -0.606 5.606 17 C 0.504 3.496 18 O -0.581 6.581 19 C 0.048 3.952 20 O -0.399 6.399 21 C 0.000 4.000 22 C 0.255 3.745 23 F -0.225 7.225 24 F -0.223 7.223 25 C 0.107 3.893 26 C -0.128 4.128 27 H 0.001 0.999 28 H 0.014 0.986 29 H 0.027 0.973 30 H 0.246 0.754 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.180 0.820 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.054 0.946 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 -21.940 12.830 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.347 5.347 3 C -0.386 4.386 4 H 0.091 0.909 5 C -0.255 4.255 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.224 1.224 10 H -0.191 1.191 11 C 0.022 3.978 12 C -0.155 4.155 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.007 4.007 16 N -0.340 5.340 17 C 0.293 3.707 18 O -0.461 6.461 19 C -0.030 4.030 20 O -0.319 6.319 21 C -0.077 4.077 22 C 0.202 3.798 23 F -0.206 7.206 24 F -0.205 7.205 25 C -0.014 4.014 26 C -0.166 4.166 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.197 0.803 45 H 0.131 0.869 46 H 0.113 0.887 47 H 0.073 0.927 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.217 -22.404 12.413 28.822 hybrid contribution -0.425 1.362 -0.196 1.441 sum 12.792 -21.042 12.217 27.489 Atomic orbital electron populations 1.20500 0.83178 0.95650 0.97391 1.44295 1.02049 1.02196 1.86145 1.19558 0.97129 0.86195 1.35740 0.90872 1.25758 0.98733 1.01747 0.99229 1.70262 1.20419 1.26997 1.41244 0.85264 0.78442 0.79769 0.76885 1.21501 1.22386 1.19089 1.21087 0.95504 0.86186 0.95025 1.21997 0.98578 0.95965 0.98962 1.21126 0.98490 0.92884 0.97004 1.21987 0.98065 0.94004 1.01966 1.21586 0.99235 0.96942 0.82976 1.48210 1.54202 1.14707 1.16868 1.20958 0.79431 0.81465 0.88824 1.90710 1.41668 1.47593 1.66120 1.22463 1.02138 0.85828 0.92619 1.88044 1.78429 1.32320 1.33076 1.24104 1.03030 0.94965 0.85558 1.22872 0.74093 0.88266 0.94533 1.92972 1.33062 1.97112 1.97492 1.92969 1.85904 1.71144 1.70464 1.22075 0.94351 0.86366 0.98647 1.21955 1.00711 0.97581 0.96362 0.98105 0.96736 0.95433 0.94482 0.93372 0.92812 0.95111 0.94104 0.89853 0.90184 0.93435 0.89492 0.91194 0.86204 0.87100 0.86758 0.87250 0.80325 0.86851 0.88744 0.92667 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 9.02 127.77 1.15 10.20 16 2 N -0.62 -31.37 2.93 -726.94 -2.13 -33.50 16 3 C -0.26 -14.00 9.68 84.03 0.81 -13.18 16 4 H 0.07 3.84 7.86 -2.91 -0.02 3.82 16 5 C -0.06 -3.39 5.06 84.86 0.43 -2.97 16 6 N -0.94 -56.42 10.67 21.65 0.23 -56.19 16 7 Si 0.97 45.04 29.58 68.60 2.03 47.07 16 8 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.15 5.69 5.47 86.38 0.47 6.16 16 12 C -0.11 -3.91 5.01 30.59 0.15 -3.76 16 13 C -0.08 -1.77 2.15 -10.66 -0.02 -1.79 16 14 C -0.12 -2.87 5.16 30.78 0.16 -2.72 16 15 C 0.11 2.49 6.42 86.36 0.55 3.05 16 16 N -0.61 -11.74 2.97 -818.89 -2.44 -14.18 16 17 C 0.50 11.94 7.78 87.66 0.68 12.63 16 18 O -0.58 -20.45 15.91 16.02 0.25 -20.20 16 19 C 0.05 0.67 4.76 71.24 0.34 1.01 16 20 O -0.40 -8.04 9.76 -129.94 -1.27 -9.31 16 21 C 0.00 0.00 6.16 71.98 0.44 0.44 16 22 C 0.26 2.85 5.63 71.98 0.41 3.26 16 23 F -0.22 -4.49 17.28 44.97 0.78 -3.71 16 24 F -0.22 -4.26 17.28 44.97 0.78 -3.48 16 25 C 0.11 1.29 6.34 86.36 0.55 1.84 16 26 C -0.13 -2.29 5.36 30.67 0.16 -2.12 16 27 H 0.00 0.04 7.40 -2.39 -0.02 0.02 16 28 H 0.01 0.78 7.21 -2.39 -0.02 0.76 16 29 H 0.03 1.19 7.84 -2.38 -0.02 1.17 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 32 H 0.05 1.89 6.25 -2.39 -0.01 1.87 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.90 6.52 -2.39 -0.02 1.88 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.83 7.00 -2.38 -0.02 1.82 16 40 H 0.12 0.73 7.94 -2.39 -0.02 0.71 16 41 H 0.11 0.91 7.69 -2.39 -0.02 0.89 16 42 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.18 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.11 0.62 5.93 -2.39 -0.01 0.60 16 46 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -83.74 389.26 5.47 -78.27 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 0.94 Total: 3.18 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.29 Total: 12.06 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.33 Total: -103.87 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.01 Total: -29.51 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.55 Total: -7.19 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -83.74 5.47 -78.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732549722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.774 kcal (2) G-P(sol) polarization free energy of solvation -83.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds